Wall clock time and date at job start Mon Mar 30 2020 06:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99674 * 2 1 4 4 H 1.48499 * 109.47028 * 270.00229 * 3 2 1 5 5 H 1.48505 * 109.46979 * 30.00139 * 3 2 1 6 6 H 1.48495 * 109.46935 * 149.99912 * 3 2 1 7 7 C 1.37877 * 120.00354 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99559 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99901 * 179.97438 * 7 2 1 10 10 H 1.08993 * 109.50178 * 60.08291 * 9 7 2 11 11 C 1.53118 * 109.50486 * 300.00267 * 9 7 2 12 12 C 1.53124 * 109.16054 * 182.40635 * 11 9 7 13 13 C 1.53036 * 109.27870 * 57.65216 * 12 11 9 14 14 N 1.46840 * 109.52568 * 300.82381 * 13 12 11 15 15 C 1.46898 * 111.00391 * 185.83754 * 14 13 12 16 16 H 1.08999 * 108.85397 * 289.49299 * 15 14 13 17 17 C 1.50474 * 108.88128 * 170.92875 * 15 14 13 18 18 C 1.54237 * 108.51291 * 145.06808 * 17 15 14 19 19 C 1.45542 * 112.41228 * 80.00196 * 18 17 15 20 20 C 1.54241 * 112.40048 * 298.06294 * 19 18 17 21 21 C 1.50483 * 108.53113 * 79.97482 * 20 19 18 22 22 C 1.54003 * 112.54447 * 265.93396 * 21 20 19 23 23 H 1.08997 * 108.71638 * 280.73163 * 22 21 20 24 24 O 1.42901 * 108.86694 * 162.48085 * 22 21 20 25 25 C 1.46847 * 111.20023 * 61.73993 * 14 13 12 26 26 H 0.96989 * 120.00284 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.52344 * 62.50235 * 11 9 7 28 28 H 1.09001 * 109.57442 * 302.34123 * 11 9 7 29 29 H 1.08991 * 109.50252 * 177.59650 * 12 11 9 30 30 H 1.08996 * 109.50135 * 297.71373 * 12 11 9 31 31 H 1.09002 * 109.45732 * 60.84000 * 13 12 11 32 32 H 1.09000 * 109.45929 * 180.80517 * 13 12 11 33 33 H 1.08993 * 109.62941 * 264.77856 * 17 15 14 34 34 H 1.08999 * 109.62782 * 25.16548 * 17 15 14 35 35 H 1.09002 * 108.89429 * 200.75912 * 18 17 15 36 36 H 1.09000 * 108.89849 * 319.24594 * 18 17 15 37 37 H 1.09004 * 108.89452 * 58.81313 * 19 18 17 38 38 H 1.08996 * 108.89742 * 177.40423 * 19 18 17 39 39 H 1.09001 * 109.62972 * 199.68575 * 20 19 18 40 40 H 1.09001 * 109.63280 * 320.06751 * 20 19 18 41 41 H 1.09001 * 108.86922 * 26.62973 * 21 20 19 42 42 H 1.08994 * 108.87476 * 145.07323 * 21 20 19 43 43 H 0.96703 * 114.00178 * 56.62601 * 24 22 21 44 44 H 1.09001 * 109.46758 * 178.24411 * 25 14 13 45 45 H 1.09007 * 109.46243 * 58.27519 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0000 10 1 3.8758 -0.6808 0.8900 11 6 4.0223 -0.4730 -1.2506 12 6 5.5523 -0.5298 -1.2740 13 6 6.0042 -1.9916 -1.2412 14 7 5.4910 -2.6369 -0.0261 15 6 6.0190 -4.0010 0.1088 16 1 5.5636 -4.6321 -0.6544 17 6 5.6487 -4.5345 1.4662 18 6 5.3720 -6.0465 1.3394 19 6 6.5955 -6.8343 1.3133 20 6 7.4891 -6.4923 0.1035 21 6 8.2508 -5.2319 0.4127 22 6 7.5431 -3.9699 -0.1145 23 1 7.7401 -3.8788 -1.1827 24 8 8.0829 -2.8256 0.5499 25 6 4.0227 -2.6364 -0.0043 26 1 -0.4850 0.8399 0.0004 27 1 3.6968 0.5670 -1.2300 28 1 3.6261 -0.9612 -2.1410 29 1 5.9203 -0.0555 -2.1836 30 1 5.9492 -0.0068 -0.4040 31 1 5.6184 -2.5106 -2.1187 32 1 7.0933 -2.0352 -1.2433 33 1 6.4719 -4.3699 2.1613 34 1 4.7559 -4.0250 1.8287 35 1 4.7642 -6.3663 2.1858 36 1 4.8159 -6.2277 0.4196 37 1 7.1553 -6.6473 2.2297 38 1 6.3338 -7.8914 1.2695 39 1 8.1891 -7.3082 -0.0769 40 1 6.8680 -6.3409 -0.7793 41 1 8.3649 -5.1450 1.4933 42 1 9.2400 -5.2976 -0.0403 43 1 9.0410 -2.7328 0.4575 44 1 3.6725 -3.1484 0.8920 45 1 3.6461 -3.1525 -0.8876 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397738950.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:47 Heat of formation + Delta-G solvation = -76.358266 kcal Electronic energy + Delta-G solvation = -22326.280601 eV Core-core repulsion = 19342.098873 eV Total energy + Delta-G solvation = -2984.181728 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.12369 -38.92466 -36.90562 -35.48956 -34.05411 -32.52785 -31.88698 -30.47187 -27.16492 -25.82929 -25.24592 -23.63161 -22.73995 -21.46007 -20.51829 -20.14658 -18.84612 -17.87977 -17.78205 -16.54770 -16.32645 -15.64796 -15.41508 -15.34122 -14.95319 -14.78165 -14.66992 -14.38307 -14.08489 -13.88876 -13.76613 -13.61637 -12.98800 -12.94930 -12.68686 -12.57049 -12.29004 -11.99763 -11.82685 -11.70708 -11.56300 -11.50507 -11.37918 -11.26851 -11.14811 -10.95864 -10.65887 -10.61668 -10.52246 -9.04203 -8.31375 -6.34457 1.28305 1.35115 1.46916 2.32185 2.94346 3.04457 3.45378 3.68686 3.83693 4.02415 4.04635 4.10499 4.17032 4.25290 4.29469 4.36449 4.41102 4.43347 4.49554 4.62907 4.71972 4.77223 4.80063 4.86553 4.93070 5.02044 5.04911 5.08259 5.14367 5.16589 5.22663 5.27006 5.30183 5.34533 5.43604 5.45529 5.53931 5.56203 5.63954 5.73390 6.21485 6.35214 6.44243 6.72754 7.09787 7.31257 8.85590 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.028985 B = 0.005606 C = 0.004970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.785738 B = 4993.235071 C = 5632.578798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.015 3.985 3 Si 0.951 3.049 4 H -0.266 1.266 5 H -0.297 1.297 6 H -0.252 1.252 7 C -0.518 4.518 8 H 0.032 0.968 9 C 0.022 3.978 10 H 0.020 0.980 11 C -0.121 4.121 12 C -0.111 4.111 13 C 0.065 3.935 14 N -0.531 5.531 15 C 0.096 3.904 16 H 0.037 0.963 17 C -0.110 4.110 18 C -0.116 4.116 19 C -0.115 4.115 20 C -0.116 4.116 21 C -0.141 4.141 22 C 0.118 3.882 23 H 0.052 0.948 24 O -0.562 6.562 25 C 0.086 3.914 26 H 0.266 0.734 27 H 0.034 0.966 28 H 0.047 0.953 29 H 0.080 0.920 30 H 0.059 0.941 31 H 0.019 0.981 32 H 0.100 0.900 33 H 0.071 0.929 34 H 0.050 0.950 35 H 0.061 0.939 36 H 0.050 0.950 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.082 0.918 40 H 0.057 0.943 41 H 0.070 0.930 42 H 0.083 0.917 43 H 0.384 0.616 44 H 0.060 0.940 45 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.318 -11.398 -1.106 24.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.182 4.182 3 Si 0.778 3.222 4 H -0.192 1.192 5 H -0.225 1.225 6 H -0.176 1.176 7 C -0.557 4.557 8 H 0.050 0.950 9 C 0.003 3.997 10 H 0.038 0.962 11 C -0.159 4.159 12 C -0.149 4.149 13 C -0.063 4.063 14 N -0.256 5.256 15 C -0.012 4.012 16 H 0.055 0.945 17 C -0.148 4.148 18 C -0.154 4.154 19 C -0.152 4.152 20 C -0.153 4.153 21 C -0.179 4.179 22 C 0.058 3.942 23 H 0.070 0.930 24 O -0.368 6.368 25 C -0.041 4.041 26 H 0.075 0.925 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.098 0.902 30 H 0.078 0.922 31 H 0.037 0.963 32 H 0.118 0.882 33 H 0.090 0.910 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.101 0.899 40 H 0.075 0.925 41 H 0.088 0.912 42 H 0.101 0.899 43 H 0.232 0.768 44 H 0.079 0.921 45 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges 20.714 -10.948 -0.552 23.436 hybrid contribution -0.523 0.341 -0.818 1.029 sum 20.190 -10.607 -1.370 22.848 Atomic orbital electron populations 1.70042 1.08100 1.27995 1.52916 1.25813 0.95386 1.02853 0.94152 0.85797 0.78972 0.78743 0.78645 1.19195 1.22527 1.17615 1.21328 0.91424 0.92971 1.49964 0.94964 1.19039 0.92881 0.93627 0.94186 0.96167 1.21916 0.96021 0.98696 0.99236 1.21594 0.94442 0.96985 1.01899 1.22097 1.00727 0.93953 0.89480 1.61935 1.06857 1.18240 1.38537 1.21571 0.93949 0.88388 0.97342 0.94483 1.21404 1.01484 0.95351 0.96517 1.20472 0.98902 0.94224 1.01799 1.20483 0.96079 0.99805 0.98837 1.21295 0.98747 0.97364 0.97935 1.22021 0.99623 0.93861 1.02441 1.22233 0.91042 0.85898 0.94996 0.92986 1.86769 1.27101 1.45835 1.77133 1.21841 0.86696 0.97017 0.98585 0.92538 0.94789 0.93457 0.90167 0.92227 0.96330 0.88230 0.91031 0.93112 0.92005 0.93111 0.91680 0.91247 0.89912 0.92453 0.91185 0.89882 0.76803 0.92139 0.97274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.20 13.96 21.45 0.30 -60.90 16 2 C 0.01 0.90 5.45 84.65 0.46 1.36 16 3 Si 0.95 47.41 24.35 68.60 1.67 49.08 16 4 H -0.27 -12.54 6.89 99.48 0.69 -11.86 16 5 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 6 H -0.25 -12.02 6.53 99.48 0.65 -11.37 16 7 C -0.52 -30.96 9.15 25.60 0.23 -30.73 16 8 H 0.03 2.11 7.99 -2.91 -0.02 2.09 16 9 C 0.02 1.09 1.85 -11.49 -0.02 1.07 16 10 H 0.02 1.06 7.20 -2.39 -0.02 1.05 16 11 C -0.12 -5.38 4.73 30.68 0.15 -5.23 16 12 C -0.11 -3.92 6.09 30.65 0.19 -3.73 16 13 C 0.06 2.08 4.78 86.33 0.41 2.49 16 14 N -0.53 -18.88 4.07 -873.81 -3.56 -22.44 16 15 C 0.10 2.70 1.34 44.46 0.06 2.76 16 16 H 0.04 1.08 6.60 -2.39 -0.02 1.07 16 17 C -0.11 -3.06 5.10 30.20 0.15 -2.91 16 18 C -0.12 -2.59 5.26 28.74 0.15 -2.44 16 19 C -0.11 -1.93 5.26 28.74 0.15 -1.78 16 20 C -0.12 -1.74 5.60 30.20 0.17 -1.57 16 21 C -0.14 -2.16 4.88 30.12 0.15 -2.01 16 22 C 0.12 2.47 2.21 31.29 0.07 2.54 16 23 H 0.05 1.02 7.23 -2.39 -0.02 1.00 16 24 O -0.56 -12.70 11.42 -148.98 -1.70 -14.40 16 25 C 0.09 3.73 4.45 86.33 0.38 4.11 16 26 H 0.27 16.01 8.31 -92.72 -0.77 15.24 16 27 H 0.03 1.57 3.35 -2.39 -0.01 1.56 16 28 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.10 2.69 5.29 -2.39 -0.01 2.68 16 33 H 0.07 1.95 6.97 -2.39 -0.02 1.93 16 34 H 0.05 1.72 5.69 -2.39 -0.01 1.71 16 35 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.05 1.20 7.47 -2.39 -0.02 1.19 16 37 H 0.06 1.05 7.47 -2.38 -0.02 1.03 16 38 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.06 0.98 7.00 -2.39 -0.02 0.96 16 41 H 0.07 1.16 6.63 -2.39 -0.02 1.15 16 42 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.38 4.96 9.04 -74.06 -0.67 4.29 16 44 H 0.06 2.68 5.94 -2.39 -0.01 2.67 16 45 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 Total: -1.00 -70.24 315.94 -0.37 -70.61 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: 0.22 Total: 14.12 kcal Atomic # 6 Polarization: -38.78 SS G_CDS: 2.70 Total: -36.08 kcal Atomic # 7 Polarization: -80.08 SS G_CDS: -3.26 Total: -83.34 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: -1.70 Total: -14.40 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 1.67 Total: 49.08 kcal Total: -70.24 -0.37 -70.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397738950.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.749 kcal (2) G-P(sol) polarization free energy of solvation -70.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds