Wall clock time and date at job start Mon Mar 30 2020 07:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42906 * 110.05167 * 2 1 4 4 C 1.54264 * 110.03540 * 238.58921 * 2 1 3 5 5 C 1.54896 * 104.19702 * 217.10181 * 4 2 1 6 6 C 1.54889 * 102.74447 * 37.93820 * 5 4 2 7 7 C 1.53870 * 110.03732 * 121.41870 * 2 1 3 8 8 C 1.53009 * 110.07354 * 238.59617 * 7 2 1 9 9 N 1.46906 * 110.03066 * 359.97438 * 7 2 1 10 10 C 1.46852 * 110.99827 * 298.65700 * 9 7 2 11 11 C 1.53035 * 109.52061 * 185.83837 * 10 9 7 12 12 C 1.53120 * 109.27848 * 300.82000 * 11 10 9 13 13 C 1.53123 * 109.16221 * 57.65740 * 12 11 10 14 14 H 1.09004 * 109.50315 * 62.28218 * 13 12 11 15 15 C 1.50700 * 109.50645 * 182.40793 * 13 12 11 16 16 H 1.07993 * 120.00062 * 119.99864 * 15 13 12 17 17 C 1.37880 * 119.99564 * 299.99751 * 15 13 12 18 18 N 1.31517 * 119.99841 * 359.97438 * 17 15 13 19 19 Si 1.86793 * 119.99794 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47691 * 59.99556 * 19 17 15 21 21 H 1.48499 * 109.47003 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.46823 * 299.99379 * 19 17 15 23 23 C 1.46842 * 110.99800 * 62.86771 * 9 7 2 24 24 H 1.08991 * 109.47700 * 354.72520 * 1 2 3 25 25 H 1.09005 * 109.47346 * 114.72728 * 1 2 3 26 26 H 1.09007 * 109.46762 * 234.72134 * 1 2 3 27 27 H 0.96704 * 114.00218 * 301.41362 * 3 2 1 28 28 H 1.08997 * 110.49334 * 98.42091 * 4 2 1 29 29 H 1.09008 * 110.59960 * 335.83193 * 4 2 1 30 30 H 1.08999 * 110.75364 * 279.62487 * 5 4 2 31 31 H 1.08998 * 110.91481 * 156.32508 * 5 4 2 32 32 H 1.08997 * 110.48362 * 203.37865 * 6 5 4 33 33 H 1.09002 * 110.59869 * 80.79710 * 6 5 4 34 34 H 1.08995 * 109.46810 * 180.71277 * 8 7 2 35 35 H 1.09000 * 109.46998 * 300.71575 * 8 7 2 36 36 H 1.09002 * 109.46754 * 60.71230 * 8 7 2 37 37 H 1.08996 * 109.46340 * 65.82378 * 10 9 7 38 38 H 1.08994 * 109.45642 * 305.84602 * 10 9 7 39 39 H 1.08996 * 109.50544 * 180.87767 * 11 10 9 40 40 H 1.09004 * 109.53817 * 60.78048 * 11 10 9 41 41 H 1.09000 * 109.52353 * 297.75034 * 12 11 10 42 42 H 1.08995 * 109.57676 * 177.58959 * 12 11 10 43 43 H 0.97003 * 119.99325 * 179.97438 * 18 17 15 44 44 H 1.09003 * 109.46636 * 54.14303 * 23 9 7 45 45 H 1.09007 * 109.46265 * 294.17802 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0199 1.3424 0.0000 4 6 2.0585 -0.7553 -1.2369 5 6 3.3138 -1.5006 -0.7192 6 6 2.8875 -1.9405 0.7034 7 6 2.0571 -0.7536 1.2336 8 6 2.9406 0.1698 2.0751 9 7 0.9329 -1.2460 2.0409 10 6 0.1075 -0.1332 2.5278 11 6 -0.9637 -0.6696 3.4801 12 6 -1.8337 -1.6892 2.7397 13 6 -0.9434 -2.8126 2.2012 14 1 -0.4640 -3.3277 3.0337 15 6 -1.7836 -3.7900 1.4204 16 1 -1.5732 -3.9695 0.3764 17 6 -2.8210 -4.4552 2.0389 18 7 -3.0768 -4.2370 3.3103 19 14 -3.8620 -5.6673 1.0712 20 1 -2.9977 -6.7564 0.5498 21 1 -4.9041 -6.2434 1.9586 22 1 -4.5125 -4.9650 -0.0641 23 6 0.1273 -2.2141 1.2860 24 1 -0.3634 1.0232 0.0945 25 1 -0.3634 -0.4299 -0.9335 26 1 -0.3633 -0.5936 0.8390 27 1 1.7223 1.8698 -0.7539 28 1 2.3297 -0.0535 -2.0255 29 1 1.3152 -1.4659 -1.5989 30 1 4.1710 -0.8288 -0.6752 31 1 3.5358 -2.3676 -1.3414 32 1 3.7638 -2.1036 1.3308 33 1 2.2780 -2.8431 0.6592 34 1 3.3186 -0.3771 2.9388 35 1 3.7781 0.5203 1.4719 36 1 2.3543 1.0239 2.4140 37 1 -0.3722 0.3601 1.6824 38 1 0.7376 0.5822 3.0560 39 1 -1.5860 0.1544 3.8291 40 1 -0.4852 -1.1508 4.3331 41 1 -2.3433 -1.1990 1.9102 42 1 -2.5714 -2.1060 3.4252 43 1 -3.8068 -4.7047 3.7453 44 1 0.7717 -3.0098 0.9122 45 1 -0.3525 -1.7110 0.4464 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397756389.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:43 Heat of formation + Delta-G solvation = 28.241818 kcal Electronic energy + Delta-G solvation = -23119.991153 eV Core-core repulsion = 20140.345225 eV Total energy + Delta-G solvation = -2979.645928 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.29274 -37.21209 -34.97418 -33.43225 -31.60474 -30.90840 -30.01906 -28.40682 -25.97147 -25.03122 -24.25689 -22.30475 -21.34436 -20.45094 -18.72767 -18.53680 -16.47833 -16.06807 -15.86988 -15.42323 -14.70601 -14.45013 -14.22254 -13.65789 -13.21922 -13.12428 -12.66237 -12.58054 -12.47148 -12.31248 -12.11678 -11.62908 -11.41383 -11.27122 -10.92001 -10.87343 -10.71240 -10.66888 -10.47978 -10.33509 -10.20382 -10.11102 -9.88615 -9.70625 -9.55371 -9.13600 -8.94441 -8.64978 -8.27606 -7.34996 -5.96217 -4.02649 3.31904 3.37117 3.39042 4.30827 4.34575 4.49398 4.70174 4.90497 5.06939 5.33611 5.36807 5.38818 5.53954 5.56686 5.63842 5.79474 5.86162 5.89397 5.96695 6.00459 6.07736 6.12664 6.18363 6.21529 6.24607 6.34226 6.40451 6.43291 6.48701 6.58013 6.64346 6.64469 6.81059 6.82511 7.07175 7.24869 7.43632 7.73368 7.77727 7.78912 7.93500 8.11326 8.20297 8.49596 9.01654 9.61671 11.09560 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.025286 B = 0.006454 C = 0.005857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.045349 B = 4337.481657 C = 4779.794659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C 0.106 3.894 3 O -0.554 6.554 4 C -0.147 4.147 5 C -0.120 4.120 6 C -0.121 4.121 7 C 0.121 3.879 8 C -0.117 4.117 9 N -0.519 5.519 10 C 0.012 3.988 11 C -0.118 4.118 12 C -0.113 4.113 13 C 0.057 3.943 14 H 0.032 0.968 15 C -0.515 4.515 16 H 0.052 0.948 17 C 0.064 3.936 18 N -0.887 5.887 19 Si 0.889 3.111 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.279 1.279 23 C 0.013 3.987 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.164 0.836 27 H 0.365 0.635 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.057 0.943 37 H 0.071 0.929 38 H 0.061 0.939 39 H 0.045 0.955 40 H 0.058 0.942 41 H 0.029 0.971 42 H 0.091 0.909 43 H 0.260 0.740 44 H 0.066 0.934 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.330 8.910 -6.006 14.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.318 4.318 2 C 0.064 3.936 3 O -0.359 6.359 4 C -0.185 4.185 5 C -0.158 4.158 6 C -0.159 4.159 7 C 0.031 3.969 8 C -0.175 4.175 9 N -0.243 5.243 10 C -0.114 4.114 11 C -0.156 4.156 12 C -0.151 4.151 13 C 0.038 3.962 14 H 0.051 0.949 15 C -0.554 4.554 16 H 0.071 0.929 17 C -0.138 4.138 18 N -0.526 5.526 19 Si 0.717 3.283 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.204 1.204 23 C -0.111 4.111 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.181 0.819 27 H 0.211 0.789 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.105 0.895 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.064 0.936 40 H 0.077 0.923 41 H 0.048 0.952 42 H 0.109 0.891 43 H 0.070 0.930 44 H 0.084 0.916 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.676 8.401 -4.868 13.707 hybrid contribution -1.235 -0.025 -1.847 2.223 sum 8.440 8.376 -6.715 13.656 Atomic orbital electron populations 1.24807 0.96321 1.03734 1.06985 1.22575 0.92580 0.82233 0.96214 1.86610 1.75712 1.23367 1.50192 1.23142 0.98410 0.99717 0.97272 1.22416 0.97265 0.99498 0.96622 1.22653 0.99583 0.98402 0.95225 1.21673 0.92254 0.93075 0.89943 1.21561 0.98716 0.98487 0.98732 1.62301 1.10199 1.14318 1.37478 1.23046 0.95594 0.93293 0.99468 1.21691 0.96516 0.98783 0.98599 1.21694 0.99156 0.95060 0.99235 1.18643 0.90659 0.92546 0.94350 0.94937 1.21110 1.14422 1.23312 0.96551 0.92935 1.24926 0.97315 0.96705 0.94822 1.69885 1.30436 1.42357 1.09934 0.86720 0.80115 0.81622 0.79874 1.20336 1.21335 1.20429 1.23321 0.95996 0.94057 0.97773 0.92570 0.92652 0.81915 0.78904 0.91800 0.90784 0.91678 0.91674 0.91240 0.89515 0.92777 0.92567 0.92385 0.91160 0.92041 0.93642 0.92308 0.95244 0.89072 0.93025 0.91553 0.91664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -4.10 5.85 37.15 0.22 -3.88 16 2 C 0.11 1.52 1.06 -89.51 -0.09 1.43 16 3 O -0.55 -7.35 11.00 -35.23 -0.39 -7.74 16 4 C -0.15 -1.91 5.98 -25.07 -0.15 -2.06 16 5 C -0.12 -1.51 6.91 -24.73 -0.17 -1.68 16 6 C -0.12 -1.78 5.83 -25.08 -0.15 -1.92 16 7 C 0.12 1.90 0.62 -130.48 -0.08 1.82 16 8 C -0.12 -1.74 7.15 37.16 0.27 -1.48 16 9 N -0.52 -9.49 4.51 -224.05 -1.01 -10.51 16 10 C 0.01 0.22 4.61 -3.83 -0.02 0.20 16 11 C -0.12 -2.32 6.09 -26.65 -0.16 -2.49 16 12 C -0.11 -2.64 4.83 -26.61 -0.13 -2.77 16 13 C 0.06 1.39 2.26 -91.69 -0.21 1.18 16 14 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 15 C -0.52 -13.83 8.56 -34.44 -0.29 -14.13 16 16 H 0.05 1.38 7.74 -52.49 -0.41 0.98 16 17 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 18 N -0.89 -25.14 11.35 55.43 0.63 -24.51 16 19 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 C 0.01 0.27 3.85 -3.83 -0.01 0.26 16 24 H 0.06 0.82 7.41 -51.93 -0.38 0.43 16 25 H 0.05 0.84 7.10 -51.93 -0.37 0.47 16 26 H 0.16 2.93 1.00 -59.71 -0.06 2.87 16 27 H 0.36 3.56 9.07 45.56 0.41 3.97 16 28 H 0.06 0.72 8.06 -51.93 -0.42 0.30 16 29 H 0.07 1.01 7.48 -51.92 -0.39 0.62 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.96 7.84 -51.93 -0.41 0.55 16 33 H 0.09 1.40 5.29 -51.93 -0.27 1.13 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.79 7.84 -51.93 -0.41 0.38 16 36 H 0.06 0.89 6.13 -51.93 -0.32 0.57 16 37 H 0.07 1.23 3.64 -57.60 -0.21 1.02 16 38 H 0.06 1.04 6.07 -51.93 -0.32 0.72 16 39 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.03 0.67 8.03 -51.93 -0.42 0.26 16 42 H 0.09 2.39 6.15 -51.93 -0.32 2.07 16 43 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 44 H 0.07 1.36 5.49 -51.93 -0.28 1.08 16 45 H 0.07 1.32 3.96 -52.19 -0.21 1.11 16 LS Contribution 312.08 15.07 4.70 4.70 Total: -1.00 -27.95 312.08 -8.61 -36.57 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -6.44 Total: 9.30 kcal Atomic # 6 Polarization: -22.78 SS G_CDS: -1.08 Total: -23.86 kcal Atomic # 7 Polarization: -34.64 SS G_CDS: -0.38 Total: -35.02 kcal Atomic # 8 Polarization: -7.35 SS G_CDS: -0.39 Total: -7.74 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -27.95 -8.61 -36.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397756389.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.808 kcal (2) G-P(sol) polarization free energy of solvation -27.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds