Wall clock time and date at job start Mon Mar 30 2020 07:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42906 * 110.05167 * 2 1 4 4 C 1.54264 * 110.03540 * 238.58921 * 2 1 3 5 5 C 1.54896 * 104.19702 * 217.10181 * 4 2 1 6 6 C 1.54889 * 102.74447 * 37.93820 * 5 4 2 7 7 C 1.53870 * 110.03732 * 121.41870 * 2 1 3 8 8 C 1.53009 * 110.07354 * 238.59617 * 7 2 1 9 9 N 1.46906 * 110.03066 * 359.97438 * 7 2 1 10 10 C 1.46852 * 110.99827 * 298.65700 * 9 7 2 11 11 C 1.53035 * 109.52061 * 185.83837 * 10 9 7 12 12 C 1.53120 * 109.27848 * 300.82000 * 11 10 9 13 13 C 1.53123 * 109.16221 * 57.65740 * 12 11 10 14 14 H 1.09004 * 109.50315 * 62.28218 * 13 12 11 15 15 C 1.50700 * 109.50645 * 182.40793 * 13 12 11 16 16 H 1.07993 * 120.00062 * 119.99864 * 15 13 12 17 17 C 1.37880 * 119.99564 * 299.99751 * 15 13 12 18 18 N 1.31517 * 119.99841 * 359.97438 * 17 15 13 19 19 Si 1.86793 * 119.99794 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47691 * 59.99556 * 19 17 15 21 21 H 1.48499 * 109.47003 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.46823 * 299.99379 * 19 17 15 23 23 C 1.46842 * 110.99800 * 62.86771 * 9 7 2 24 24 H 1.08991 * 109.47700 * 354.72520 * 1 2 3 25 25 H 1.09005 * 109.47346 * 114.72728 * 1 2 3 26 26 H 1.09007 * 109.46762 * 234.72134 * 1 2 3 27 27 H 0.96704 * 114.00218 * 301.41362 * 3 2 1 28 28 H 1.08997 * 110.49334 * 98.42091 * 4 2 1 29 29 H 1.09008 * 110.59960 * 335.83193 * 4 2 1 30 30 H 1.08999 * 110.75364 * 279.62487 * 5 4 2 31 31 H 1.08998 * 110.91481 * 156.32508 * 5 4 2 32 32 H 1.08997 * 110.48362 * 203.37865 * 6 5 4 33 33 H 1.09002 * 110.59869 * 80.79710 * 6 5 4 34 34 H 1.08995 * 109.46810 * 180.71277 * 8 7 2 35 35 H 1.09000 * 109.46998 * 300.71575 * 8 7 2 36 36 H 1.09002 * 109.46754 * 60.71230 * 8 7 2 37 37 H 1.08996 * 109.46340 * 65.82378 * 10 9 7 38 38 H 1.08994 * 109.45642 * 305.84602 * 10 9 7 39 39 H 1.08996 * 109.50544 * 180.87767 * 11 10 9 40 40 H 1.09004 * 109.53817 * 60.78048 * 11 10 9 41 41 H 1.09000 * 109.52353 * 297.75034 * 12 11 10 42 42 H 1.08995 * 109.57676 * 177.58959 * 12 11 10 43 43 H 0.97003 * 119.99325 * 179.97438 * 18 17 15 44 44 H 1.09003 * 109.46636 * 54.14303 * 23 9 7 45 45 H 1.09007 * 109.46265 * 294.17802 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0199 1.3424 0.0000 4 6 2.0585 -0.7553 -1.2369 5 6 3.3138 -1.5006 -0.7192 6 6 2.8875 -1.9405 0.7034 7 6 2.0571 -0.7536 1.2336 8 6 2.9406 0.1698 2.0751 9 7 0.9329 -1.2460 2.0409 10 6 0.1075 -0.1332 2.5278 11 6 -0.9637 -0.6696 3.4801 12 6 -1.8337 -1.6892 2.7397 13 6 -0.9434 -2.8126 2.2012 14 1 -0.4640 -3.3277 3.0337 15 6 -1.7836 -3.7900 1.4204 16 1 -1.5732 -3.9695 0.3764 17 6 -2.8210 -4.4552 2.0389 18 7 -3.0768 -4.2370 3.3103 19 14 -3.8620 -5.6673 1.0712 20 1 -2.9977 -6.7564 0.5498 21 1 -4.9041 -6.2434 1.9586 22 1 -4.5125 -4.9650 -0.0641 23 6 0.1273 -2.2141 1.2860 24 1 -0.3634 1.0232 0.0945 25 1 -0.3634 -0.4299 -0.9335 26 1 -0.3633 -0.5936 0.8390 27 1 1.7223 1.8698 -0.7539 28 1 2.3297 -0.0535 -2.0255 29 1 1.3152 -1.4659 -1.5989 30 1 4.1710 -0.8288 -0.6752 31 1 3.5358 -2.3676 -1.3414 32 1 3.7638 -2.1036 1.3308 33 1 2.2780 -2.8431 0.6592 34 1 3.3186 -0.3771 2.9388 35 1 3.7781 0.5203 1.4719 36 1 2.3543 1.0239 2.4140 37 1 -0.3722 0.3601 1.6824 38 1 0.7376 0.5822 3.0560 39 1 -1.5860 0.1544 3.8291 40 1 -0.4852 -1.1508 4.3331 41 1 -2.3433 -1.1990 1.9102 42 1 -2.5714 -2.1060 3.4252 43 1 -3.8068 -4.7047 3.7453 44 1 0.7717 -3.0098 0.9122 45 1 -0.3525 -1.7110 0.4464 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397756389.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:42 Heat of formation + Delta-G solvation = 9.876635 kcal Electronic energy + Delta-G solvation = -23120.787527 eV Core-core repulsion = 20140.345225 eV Total energy + Delta-G solvation = -2980.442302 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.60505 -38.60370 -36.14643 -35.18579 -33.16114 -32.24594 -31.67054 -29.78149 -27.25678 -26.71048 -25.70272 -23.83854 -22.88568 -21.65606 -20.35913 -19.83324 -18.27118 -17.44307 -17.13956 -16.67829 -16.45556 -15.95571 -15.48680 -15.13413 -14.75726 -14.35145 -14.25062 -14.11446 -13.84645 -13.65156 -13.44501 -13.12247 -12.83958 -12.71915 -12.56807 -12.46662 -12.38647 -11.90453 -11.83339 -11.69289 -11.62596 -11.55396 -11.35487 -11.18492 -10.92900 -10.78192 -10.61005 -10.50290 -10.28771 -8.78732 -8.05351 -6.19414 1.42273 1.43196 1.50667 2.43909 3.05786 3.21606 3.28127 3.58904 3.79512 3.95569 4.16214 4.18175 4.31295 4.33057 4.38054 4.48238 4.51559 4.65679 4.68496 4.76974 4.77766 4.92352 4.94016 4.98041 4.99393 5.00888 5.06488 5.11564 5.15374 5.16359 5.26941 5.31374 5.33850 5.42050 5.49593 5.55414 5.59563 5.66625 6.01431 6.19732 6.27740 6.48136 6.52323 6.94385 6.95674 7.48541 8.99012 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.025286 B = 0.006454 C = 0.005857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.045349 B = 4337.481657 C = 4779.794659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C 0.114 3.886 3 O -0.558 6.558 4 C -0.146 4.146 5 C -0.113 4.113 6 C -0.125 4.125 7 C 0.114 3.886 8 C -0.111 4.111 9 N -0.531 5.531 10 C 0.019 3.981 11 C -0.111 4.111 12 C -0.104 4.104 13 C 0.056 3.944 14 H -0.012 1.012 15 C -0.533 4.533 16 H 0.054 0.946 17 C 0.014 3.986 18 N -0.916 5.916 19 Si 0.951 3.049 20 H -0.272 1.272 21 H -0.286 1.286 22 H -0.270 1.270 23 C 0.031 3.969 24 H 0.067 0.933 25 H 0.057 0.943 26 H 0.137 0.863 27 H 0.383 0.617 28 H 0.086 0.914 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.049 0.951 35 H 0.068 0.932 36 H 0.053 0.947 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.042 0.958 41 H 0.027 0.973 42 H 0.056 0.944 43 H 0.259 0.741 44 H 0.060 0.940 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.351 10.225 -7.859 16.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.318 4.318 2 C 0.071 3.929 3 O -0.365 6.365 4 C -0.184 4.184 5 C -0.150 4.150 6 C -0.162 4.162 7 C 0.024 3.976 8 C -0.168 4.168 9 N -0.255 5.255 10 C -0.107 4.107 11 C -0.149 4.149 12 C -0.142 4.142 13 C 0.037 3.963 14 H 0.006 0.994 15 C -0.571 4.571 16 H 0.072 0.928 17 C -0.185 4.185 18 N -0.556 5.556 19 Si 0.777 3.223 20 H -0.197 1.197 21 H -0.212 1.212 22 H -0.195 1.195 23 C -0.094 4.094 24 H 0.086 0.914 25 H 0.076 0.924 26 H 0.154 0.846 27 H 0.232 0.768 28 H 0.105 0.895 29 H 0.083 0.917 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.068 0.932 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.061 0.939 41 H 0.046 0.954 42 H 0.074 0.926 43 H 0.068 0.932 44 H 0.078 0.922 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 10.708 9.733 -6.739 15.963 hybrid contribution -1.531 -0.412 -1.237 2.011 sum 9.178 9.320 -7.976 15.320 Atomic orbital electron populations 1.24664 0.97449 1.03863 1.05823 1.22330 0.91539 0.83000 0.96021 1.86564 1.75607 1.22832 1.51502 1.23126 0.98213 0.99849 0.97196 1.22401 0.97452 1.00159 0.95015 1.22658 0.99324 0.97202 0.97054 1.21812 0.91324 0.93906 0.90594 1.21504 0.98762 0.97904 0.98626 1.62205 1.10518 1.14575 1.38197 1.23013 0.95186 0.93183 0.99347 1.21602 0.96863 0.98330 0.98139 1.21478 0.98702 0.95493 0.98564 1.18552 0.91662 0.92586 0.93495 0.99400 1.21499 1.14822 1.23966 0.96833 0.92815 1.25711 0.98596 0.98472 0.95707 1.70044 1.30901 1.43264 1.11370 0.85723 0.78473 0.79483 0.78634 1.19749 1.21184 1.19533 1.23018 0.94959 0.94486 0.96983 0.91413 0.92445 0.84562 0.76825 0.89545 0.91745 0.90372 0.90520 0.90674 0.91640 0.93198 0.91287 0.92800 0.90155 0.90592 0.91526 0.93905 0.95421 0.92559 0.93193 0.92192 0.90839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -7.61 5.85 71.98 0.42 -7.19 16 2 C 0.11 2.95 1.06 -10.07 -0.01 2.94 16 3 O -0.56 -12.70 11.00 -148.98 -1.64 -14.34 16 4 C -0.15 -3.33 5.98 31.67 0.19 -3.14 16 5 C -0.11 -2.49 6.91 31.89 0.22 -2.27 16 6 C -0.12 -3.48 5.83 31.67 0.18 -3.29 16 7 C 0.11 3.37 0.62 4.25 0.00 3.37 16 8 C -0.11 -3.02 7.15 71.99 0.51 -2.51 16 9 N -0.53 -19.21 4.51 -862.76 -3.89 -23.10 16 10 C 0.02 0.65 4.61 86.32 0.40 1.05 16 11 C -0.11 -4.42 6.09 30.65 0.19 -4.23 16 12 C -0.10 -5.00 4.83 30.68 0.15 -4.86 16 13 C 0.06 2.84 2.26 -11.48 -0.03 2.82 16 14 H -0.01 -0.72 8.14 -2.38 -0.02 -0.74 16 15 C -0.53 -29.33 8.56 25.60 0.22 -29.11 16 16 H 0.05 2.87 7.74 -2.91 -0.02 2.84 16 17 C 0.01 0.77 5.30 84.65 0.45 1.22 16 18 N -0.92 -53.70 11.35 21.45 0.24 -53.46 16 19 Si 0.95 43.69 29.54 68.60 2.03 45.72 16 20 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 21 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 22 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 23 C 0.03 1.28 3.85 86.33 0.33 1.61 16 24 H 0.07 1.79 7.41 -2.39 -0.02 1.77 16 25 H 0.06 1.63 7.10 -2.38 -0.02 1.61 16 26 H 0.14 4.75 1.00 -9.70 -0.01 4.74 16 27 H 0.38 5.86 9.07 -74.05 -0.67 5.19 16 28 H 0.09 1.59 8.06 -2.39 -0.02 1.57 16 29 H 0.06 1.60 7.48 -2.38 -0.02 1.59 16 30 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.07 1.97 7.84 -2.39 -0.02 1.95 16 33 H 0.07 2.11 5.29 -2.39 -0.01 2.10 16 34 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.07 1.71 7.84 -2.39 -0.02 1.69 16 36 H 0.05 1.51 6.13 -2.39 -0.01 1.49 16 37 H 0.08 2.67 3.64 -7.72 -0.03 2.65 16 38 H 0.08 2.43 6.07 -2.39 -0.01 2.41 16 39 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.04 1.81 8.14 -2.38 -0.02 1.79 16 41 H 0.03 1.29 8.03 -2.39 -0.02 1.27 16 42 H 0.06 3.09 6.15 -2.39 -0.01 3.07 16 43 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 44 H 0.06 2.52 5.49 -2.39 -0.01 2.51 16 45 H 0.07 2.94 3.96 -2.64 -0.01 2.93 16 Total: -1.00 -61.19 312.08 0.26 -60.92 By element: Atomic # 1 Polarization: 27.58 SS G_CDS: 0.29 Total: 27.87 kcal Atomic # 6 Polarization: -46.85 SS G_CDS: 3.23 Total: -43.62 kcal Atomic # 7 Polarization: -72.91 SS G_CDS: -3.65 Total: -76.55 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: -1.64 Total: -14.34 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -61.19 0.26 -60.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397756389.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.800 kcal (2) G-P(sol) polarization free energy of solvation -61.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds