Wall clock time and date at job start Mon Mar 30 2020 07:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46894 * 110.02007 * 2 1 4 4 C 1.46845 * 111.00143 * 69.53334 * 3 2 1 5 5 C 1.53043 * 109.52274 * 174.16383 * 4 3 2 6 6 C 1.53119 * 109.27742 * 59.18265 * 5 4 3 7 7 C 1.53121 * 109.15914 * 302.34050 * 6 5 4 8 8 H 1.08990 * 109.50546 * 297.71847 * 7 6 5 9 9 C 1.50693 * 109.50261 * 177.63798 * 7 6 5 10 10 H 1.08003 * 120.00086 * 240.00255 * 9 7 6 11 11 C 1.37879 * 120.00383 * 60.00304 * 9 7 6 12 12 N 1.31519 * 119.99333 * 359.97438 * 11 9 7 13 13 Si 1.86793 * 120.00394 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47454 * 89.99977 * 13 11 9 15 15 H 1.48500 * 109.47072 * 210.00178 * 13 11 9 16 16 H 1.48504 * 109.47246 * 329.99836 * 13 11 9 17 17 C 1.46854 * 110.99931 * 305.32745 * 3 2 1 18 18 C 1.54274 * 110.03066 * 121.39142 * 2 1 3 19 19 C 1.54882 * 104.19710 * 95.67144 * 18 2 1 20 20 C 1.54889 * 102.74882 * 37.94468 * 19 18 2 21 21 C 1.54215 * 110.00239 * 238.58005 * 2 1 3 22 22 C 1.53002 * 110.08833 * 359.90949 * 21 2 1 23 23 O 1.42903 * 110.13819 * 121.44443 * 21 2 1 24 24 H 1.09004 * 109.46640 * 300.06319 * 1 2 3 25 25 H 1.09001 * 109.46901 * 60.06279 * 1 2 3 26 26 H 1.08998 * 109.47192 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46767 * 294.17935 * 4 3 2 28 28 H 1.08995 * 109.46511 * 54.14645 * 4 3 2 29 29 H 1.09003 * 109.50133 * 179.12321 * 5 4 3 30 30 H 1.08995 * 109.49956 * 299.19518 * 5 4 3 31 31 H 1.08997 * 109.52556 * 62.24858 * 6 5 4 32 32 H 1.08999 * 109.51640 * 182.37676 * 6 5 4 33 33 H 0.97003 * 119.99891 * 179.97438 * 12 11 9 34 34 H 1.09004 * 109.45783 * 305.85700 * 17 3 2 35 35 H 1.08997 * 109.46231 * 65.81856 * 17 3 2 36 36 H 1.09000 * 110.48414 * 336.98960 * 18 2 1 37 37 H 1.08996 * 110.59658 * 214.41333 * 18 2 1 38 38 H 1.09003 * 110.75664 * 279.62813 * 19 18 2 39 39 H 1.09005 * 110.75422 * 156.25708 * 19 18 2 40 40 H 1.08990 * 110.49159 * 80.73227 * 20 19 18 41 41 H 1.09002 * 110.48670 * 203.24930 * 20 19 18 42 42 H 1.08997 * 109.46662 * 301.55198 * 22 21 2 43 43 H 1.09004 * 109.46712 * 61.55153 * 22 21 2 44 44 H 1.08998 * 109.47409 * 181.54825 * 22 21 2 45 45 H 0.96706 * 113.99836 * 178.48146 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0330 1.3802 0.0000 4 6 1.7627 2.0388 1.2844 5 6 2.4253 3.4182 1.3012 6 6 1.8706 4.2595 0.1483 7 6 2.1221 3.5286 -1.1735 8 1 3.1950 3.4178 -1.3297 9 6 1.5277 4.3223 -2.3082 10 1 0.7619 3.8839 -2.9310 11 6 1.9616 5.6083 -2.5516 12 7 2.8938 6.1423 -1.7929 13 14 1.2244 6.5924 -3.9577 14 1 0.0443 7.3488 -3.4673 15 1 2.2382 7.5424 -4.4820 16 1 0.8045 5.6685 -5.0419 17 6 1.4682 2.1460 -1.1186 18 6 2.0585 -0.7550 1.2373 19 6 2.3280 -2.1899 0.7202 20 6 2.8875 -1.9411 -0.7025 21 6 2.0576 -0.7554 -1.2366 22 6 0.8871 -1.2710 -2.0763 23 8 2.8836 0.1052 -2.0236 24 1 -0.3633 0.5148 0.8895 25 1 -0.3633 0.5129 -0.8906 26 1 -0.3633 -1.0276 0.0005 27 1 0.6865 2.1512 1.4156 28 1 2.1659 1.4323 2.0954 29 1 2.2115 3.9131 2.2485 30 1 3.5032 3.3056 1.1846 31 1 0.7992 4.4050 0.2861 32 1 2.3705 5.2280 0.1309 33 1 3.1993 7.0469 -1.9643 34 1 1.6575 1.6174 -2.0528 35 1 0.3934 2.2579 -0.9761 36 1 1.3062 -0.7686 2.0259 37 1 2.9806 -0.3002 1.5990 38 1 1.4030 -2.7648 0.6765 39 1 3.0675 -2.6925 1.3437 40 1 3.9439 -1.6771 -0.6563 41 1 2.7422 -2.8212 -1.3289 42 1 0.2642 -1.9263 -1.4675 43 1 0.2925 -0.4276 -2.4274 44 1 1.2707 -1.8264 -2.9322 45 1 3.2642 -0.3207 -2.8039 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397756390.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:45 Heat of formation + Delta-G solvation = -70.260360 kcal Electronic energy + Delta-G solvation = -22829.009385 eV Core-core repulsion = 19845.092082 eV Total energy + Delta-G solvation = -2983.917303 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.46703 -38.63694 -36.26982 -35.00935 -33.34066 -31.85015 -31.22181 -29.76338 -26.98386 -26.32766 -26.10714 -23.68945 -23.30951 -21.14295 -20.36874 -19.29961 -18.51193 -17.81130 -16.69081 -16.45884 -15.92505 -15.60713 -15.43878 -15.25929 -14.63160 -14.54692 -14.24908 -14.11377 -13.81987 -13.77701 -13.28132 -13.10081 -12.90423 -12.76362 -12.67095 -12.58526 -12.34587 -12.20083 -11.90572 -11.78701 -11.64512 -11.53375 -11.44764 -11.33705 -11.10654 -10.73386 -10.66157 -10.36100 -10.26085 -8.83225 -8.05078 -6.18973 1.39601 1.40249 1.50967 2.43683 3.09832 3.20905 3.52233 3.62135 3.76935 4.08791 4.22745 4.29748 4.32370 4.40011 4.43693 4.47732 4.56507 4.59186 4.63770 4.71072 4.77621 4.91433 4.92415 5.00187 5.02824 5.03140 5.10131 5.15094 5.18401 5.21605 5.25875 5.32696 5.39598 5.47257 5.50955 5.52471 5.62027 5.65285 6.06117 6.24634 6.32235 6.58084 6.60364 6.95576 7.19005 7.48168 8.99665 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.026177 B = 0.006195 C = 0.005549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.393928 B = 4518.690160 C = 5044.988735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.108 3.892 3 N -0.516 5.516 4 C 0.061 3.939 5 C -0.110 4.110 6 C -0.104 4.104 7 C 0.058 3.942 8 H -0.011 1.011 9 C -0.531 4.531 10 H 0.046 0.954 11 C 0.012 3.988 12 N -0.918 5.918 13 Si 0.954 3.046 14 H -0.276 1.276 15 H -0.282 1.282 16 H -0.269 1.269 17 C 0.092 3.908 18 C -0.114 4.114 19 C -0.112 4.112 20 C -0.141 4.141 21 C 0.129 3.871 22 C -0.171 4.171 23 O -0.553 6.553 24 H 0.049 0.951 25 H 0.044 0.956 26 H 0.086 0.914 27 H 0.020 0.980 28 H 0.086 0.914 29 H 0.065 0.935 30 H 0.046 0.954 31 H 0.017 0.983 32 H 0.055 0.945 33 H 0.259 0.741 34 H 0.077 0.923 35 H -0.004 1.004 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.064 0.936 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.043 0.957 44 H 0.069 0.931 45 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.079 -18.404 4.914 19.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.018 3.982 3 N -0.240 5.240 4 C -0.067 4.067 5 C -0.147 4.147 6 C -0.142 4.142 7 C 0.039 3.961 8 H 0.007 0.993 9 C -0.570 4.570 10 H 0.064 0.936 11 C -0.187 4.187 12 N -0.557 5.557 13 Si 0.779 3.221 14 H -0.201 1.201 15 H -0.207 1.207 16 H -0.193 1.193 17 C -0.036 4.036 18 C -0.151 4.151 19 C -0.149 4.149 20 C -0.179 4.179 21 C 0.088 3.912 22 C -0.228 4.228 23 O -0.359 6.359 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.105 0.895 27 H 0.038 0.962 28 H 0.105 0.895 29 H 0.084 0.916 30 H 0.064 0.936 31 H 0.036 0.964 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.095 0.905 35 H 0.014 0.986 36 H 0.095 0.905 37 H 0.083 0.917 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.083 0.917 41 H 0.104 0.896 42 H 0.102 0.898 43 H 0.062 0.938 44 H 0.088 0.912 45 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -2.634 -17.827 5.333 18.793 hybrid contribution -0.930 0.947 -1.185 1.779 sum -3.564 -16.880 4.148 17.744 Atomic orbital electron populations 1.22572 0.96473 1.02955 1.01166 1.21954 0.92343 0.88742 0.95155 1.62073 1.58628 1.01117 1.02148 1.22087 0.97124 0.94978 0.92531 1.21570 0.99588 0.95532 0.98056 1.21465 0.97056 1.00129 0.95556 1.18513 0.94065 0.90943 0.92586 0.99309 1.21519 1.21428 0.99322 1.14691 0.93577 1.25741 0.95421 0.98726 0.98764 1.70059 1.30332 1.15295 1.40059 0.85625 0.78152 0.78507 0.79775 1.20131 1.20739 1.19313 1.21987 0.93138 0.94407 0.94018 1.22515 1.01119 0.95760 0.95738 1.22374 1.01749 0.95419 0.95382 1.23008 0.99547 0.97555 0.97790 1.22021 0.90093 0.88977 0.90059 1.22592 0.98692 1.01112 1.00452 1.86955 1.67290 1.40280 1.41359 0.93169 0.93687 0.89541 0.96200 0.89544 0.91596 0.93552 0.96442 0.92674 0.93185 0.90519 0.98570 0.90538 0.91680 0.89869 0.90017 0.91714 0.89597 0.89819 0.93834 0.91174 0.78107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.68 6.45 71.98 0.46 -4.21 16 2 C 0.11 3.14 0.56 4.37 0.00 3.14 16 3 N -0.52 -19.83 3.94 -842.08 -3.32 -23.15 16 4 C 0.06 2.20 4.82 86.33 0.42 2.62 16 5 C -0.11 -4.61 6.09 30.65 0.19 -4.42 16 6 C -0.10 -5.39 5.02 30.67 0.15 -5.24 16 7 C 0.06 3.18 2.26 -11.49 -0.03 3.16 16 8 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 9 C -0.53 -31.39 8.57 25.60 0.22 -31.17 16 10 H 0.05 2.69 7.74 -2.91 -0.02 2.66 16 11 C 0.01 0.68 5.30 84.65 0.45 1.13 16 12 N -0.92 -56.03 11.35 21.45 0.24 -55.78 16 13 Si 0.95 45.67 29.54 68.60 2.03 47.70 16 14 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 15 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 16 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 17 C 0.09 4.22 3.44 86.32 0.30 4.52 16 18 C -0.11 -2.64 4.59 31.67 0.15 -2.49 16 19 C -0.11 -1.94 6.91 31.88 0.22 -1.72 16 20 C -0.14 -2.83 6.08 31.67 0.19 -2.64 16 21 C 0.13 3.39 1.05 -9.95 -0.01 3.37 16 22 C -0.17 -3.78 7.53 71.98 0.54 -3.24 16 23 O -0.55 -18.29 9.45 -148.98 -1.41 -19.70 16 24 H 0.05 1.38 6.85 -2.39 -0.02 1.36 16 25 H 0.04 1.41 5.26 -2.39 -0.01 1.39 16 26 H 0.09 1.78 6.62 -2.39 -0.02 1.77 16 27 H 0.02 0.73 6.90 -2.38 -0.02 0.71 16 28 H 0.09 2.66 6.23 -2.39 -0.01 2.64 16 29 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 30 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.05 3.20 6.15 -2.39 -0.01 3.19 16 33 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 34 H 0.08 3.63 5.48 -2.38 -0.01 3.62 16 35 H 0.00 -0.18 6.62 -2.39 -0.02 -0.19 16 36 H 0.08 1.56 7.84 -2.39 -0.02 1.54 16 37 H 0.06 1.72 7.24 -2.39 -0.02 1.70 16 38 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 40 H 0.06 1.47 8.08 -2.39 -0.02 1.45 16 41 H 0.09 1.33 7.84 -2.39 -0.02 1.31 16 42 H 0.08 1.49 6.62 -2.39 -0.02 1.48 16 43 H 0.04 1.17 6.88 -2.38 -0.02 1.15 16 44 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.37 9.24 9.08 -74.05 -0.67 8.57 16 Total: -1.00 -68.78 321.01 1.09 -67.70 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: 0.29 Total: 20.42 kcal Atomic # 6 Polarization: -40.44 SS G_CDS: 3.25 Total: -37.19 kcal Atomic # 7 Polarization: -75.85 SS G_CDS: -3.08 Total: -78.93 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -1.41 Total: -19.70 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -68.78 1.09 -67.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397756390.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.564 kcal (2) G-P(sol) polarization free energy of solvation -68.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds