Wall clock time and date at job start Mon Mar 30 2020 07:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46892 * 110.01913 * 2 1 4 4 C 1.46840 * 111.00180 * 304.90481 * 3 2 1 5 5 C 1.53040 * 109.52582 * 185.84259 * 4 3 2 6 6 C 1.53122 * 109.27511 * 300.81803 * 5 4 3 7 7 C 1.53117 * 109.21298 * 57.62464 * 6 5 4 8 8 H 1.08996 * 109.50500 * 62.31650 * 7 6 5 9 9 C 1.50700 * 109.50513 * 182.43466 * 7 6 5 10 10 H 1.08005 * 120.00231 * 119.99625 * 9 7 6 11 11 C 1.37873 * 120.00063 * 299.99876 * 9 7 6 12 12 N 1.31515 * 119.99804 * 179.97438 * 11 9 7 13 13 Si 1.86793 * 120.00082 * 0.02562 * 11 9 7 14 14 H 1.48498 * 109.47698 * 89.99596 * 13 11 9 15 15 H 1.48500 * 109.47198 * 209.99997 * 13 11 9 16 16 H 1.48501 * 109.47131 * 329.99646 * 13 11 9 17 17 C 1.46846 * 111.00228 * 69.11807 * 3 2 1 18 18 C 1.54274 * 110.03053 * 121.39544 * 2 1 3 19 19 C 1.54883 * 104.19709 * 142.94103 * 18 2 1 20 20 C 1.54891 * 102.75072 * 322.05410 * 19 18 2 21 21 C 1.53875 * 110.07365 * 238.57974 * 2 1 3 22 22 C 1.53002 * 110.03083 * 359.97438 * 21 2 1 23 23 O 1.42896 * 110.03294 * 121.40934 * 21 2 1 24 24 H 1.08996 * 109.46995 * 60.70005 * 1 2 3 25 25 H 1.08997 * 109.47506 * 180.70213 * 1 2 3 26 26 H 1.09000 * 109.46769 * 300.69902 * 1 2 3 27 27 H 1.08994 * 109.46451 * 65.82345 * 4 3 2 28 28 H 1.08997 * 109.46231 * 305.85278 * 4 3 2 29 29 H 1.08997 * 109.50573 * 180.88064 * 5 4 3 30 30 H 1.08998 * 109.53676 * 60.77528 * 5 4 3 31 31 H 1.08995 * 109.52464 * 177.55774 * 6 5 4 32 32 H 1.08998 * 109.52702 * 297.68966 * 6 5 4 33 33 H 0.97005 * 119.99936 * 180.02562 * 12 11 9 34 34 H 1.09002 * 109.45728 * 294.17760 * 17 3 2 35 35 H 1.08999 * 109.46654 * 54.13908 * 17 3 2 36 36 H 1.09009 * 110.48274 * 261.61686 * 18 2 1 37 37 H 1.09001 * 110.48842 * 24.25624 * 18 2 1 38 38 H 1.09005 * 110.75456 * 80.37137 * 19 18 2 39 39 H 1.09002 * 110.75927 * 203.55340 * 19 18 2 40 40 H 1.08998 * 110.48596 * 156.61992 * 20 19 18 41 41 H 1.08997 * 110.48314 * 279.26661 * 20 19 18 42 42 H 1.09004 * 109.47113 * 59.99949 * 22 21 2 43 43 H 1.09001 * 109.47309 * 179.97438 * 22 21 2 44 44 H 1.08999 * 109.47225 * 299.99938 * 22 21 2 45 45 H 0.96696 * 114.00169 * 179.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0329 1.3802 0.0000 4 6 1.4760 2.1432 -1.1242 5 6 2.1302 3.5256 -1.1781 6 6 1.8697 4.2598 0.1401 7 6 2.4152 3.4220 1.2998 8 1 3.4939 3.3091 1.1914 9 6 2.1093 4.1101 2.6052 10 1 1.5055 3.6123 3.3496 11 6 2.6001 5.3752 2.8492 12 7 2.3327 5.9759 3.9882 13 14 3.6437 6.2366 1.5615 14 1 2.7659 7.0214 0.6568 15 1 4.6049 7.1484 2.2323 16 1 4.3903 5.2247 0.7716 17 6 1.7539 2.0420 1.2809 18 6 2.0584 -0.7551 1.2372 19 6 3.3143 -1.4996 0.7201 20 6 2.8890 -1.9400 -0.7026 21 6 2.0581 -0.7534 -1.2333 22 6 0.8879 -1.2678 -2.0741 23 8 2.8833 0.1098 -2.0181 24 1 -0.3633 0.5029 -0.8962 25 1 -0.3634 -1.0275 0.0126 26 1 -0.3633 0.5247 0.8837 27 1 0.4003 2.2555 -0.9896 28 1 1.6718 1.6123 -2.0558 29 1 1.7054 4.0974 -2.0032 30 1 3.2043 3.4150 -1.3270 31 1 2.3705 5.2278 0.1230 32 1 0.7975 4.4066 0.2696 33 1 2.6777 6.8661 4.1597 34 1 0.6768 2.1547 1.4043 35 1 2.1514 1.4375 2.0962 36 1 2.3290 -0.0528 2.0259 37 1 1.3145 -1.4660 1.5968 38 1 4.1712 -0.8273 0.6764 39 1 3.5354 -2.3646 1.3454 40 1 3.7656 -2.1026 -1.3296 41 1 2.2792 -2.8423 -0.6563 42 1 0.2786 -0.4257 -2.4024 43 1 1.2720 -1.7992 -2.9449 44 1 0.2793 -1.9445 -1.4743 45 1 3.2475 -0.3076 -2.8106 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397756391.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:48 Heat of formation + Delta-G solvation = -37.655228 kcal Electronic energy + Delta-G solvation = -22875.846232 eV Core-core repulsion = 19893.342794 eV Total energy + Delta-G solvation = -2982.503438 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.41063 -37.35000 -35.05919 -33.30761 -31.90437 -31.04502 -30.04235 -28.63936 -25.62399 -24.96043 -24.66187 -22.66261 -21.36635 -20.33805 -18.87731 -18.02658 -16.88143 -16.41065 -15.77482 -15.24395 -14.88124 -14.27341 -13.89624 -13.71626 -13.68539 -13.33866 -13.14935 -12.85164 -12.67616 -12.19958 -12.15109 -11.91663 -11.73279 -11.44764 -11.31779 -11.02752 -10.93894 -10.90283 -10.59469 -10.47190 -10.32016 -10.11355 -9.87884 -9.77181 -9.66145 -9.44212 -8.89737 -8.74975 -8.42326 -7.46732 -5.99712 -3.97847 3.35480 3.46004 3.51505 4.14125 4.48692 4.50421 4.57542 4.74606 4.97165 5.19216 5.33169 5.33361 5.38891 5.42386 5.51855 5.56404 5.73466 5.77985 5.78718 5.81690 5.90557 5.99186 6.00203 6.04892 6.07223 6.16326 6.24996 6.28788 6.37283 6.44151 6.47610 6.52121 6.60246 6.72806 6.86471 6.99080 7.01440 7.35627 7.60695 7.75600 7.80780 7.97876 8.06980 8.61123 9.03833 9.64175 11.13637 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.028551 B = 0.006255 C = 0.005886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.454860 B = 4475.238207 C = 4756.113031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.122 3.878 3 N -0.506 5.506 4 C 0.062 3.938 5 C -0.116 4.116 6 C -0.122 4.122 7 C 0.022 3.978 8 H 0.034 0.966 9 C -0.511 4.511 10 H 0.071 0.929 11 C 0.070 3.930 12 N -0.905 5.905 13 Si 0.888 3.112 14 H -0.281 1.281 15 H -0.300 1.300 16 H -0.263 1.263 17 C 0.067 3.933 18 C -0.127 4.127 19 C -0.114 4.114 20 C -0.145 4.145 21 C 0.138 3.862 22 C -0.178 4.178 23 O -0.525 6.525 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.016 0.984 28 H 0.088 0.912 29 H 0.047 0.953 30 H 0.062 0.938 31 H 0.043 0.957 32 H 0.052 0.948 33 H 0.262 0.738 34 H 0.023 0.977 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.060 0.940 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.052 0.948 44 H 0.066 0.934 45 H 0.357 0.643 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.436 -16.034 -12.577 20.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.032 3.968 3 N -0.230 5.230 4 C -0.065 4.065 5 C -0.154 4.154 6 C -0.159 4.159 7 C 0.003 3.997 8 H 0.052 0.948 9 C -0.550 4.550 10 H 0.089 0.911 11 C -0.131 4.131 12 N -0.544 5.544 13 Si 0.719 3.281 14 H -0.209 1.209 15 H -0.228 1.228 16 H -0.187 1.187 17 C -0.060 4.060 18 C -0.164 4.164 19 C -0.151 4.151 20 C -0.183 4.183 21 C 0.097 3.903 22 C -0.235 4.235 23 O -0.328 6.328 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.034 0.966 28 H 0.106 0.894 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.041 0.959 35 H 0.089 0.911 36 H 0.107 0.893 37 H 0.082 0.918 38 H 0.094 0.906 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.071 0.929 44 H 0.085 0.915 45 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -1.058 -15.460 -12.050 19.630 hybrid contribution -0.365 0.283 -0.933 1.041 sum -1.423 -15.176 -12.983 20.023 Atomic orbital electron populations 1.22658 0.97165 1.01702 1.02480 1.21581 0.91532 0.90771 0.92962 1.62021 1.57993 0.99410 1.03580 1.22158 0.94890 0.94359 0.95087 1.21612 1.00964 0.95119 0.97732 1.22013 1.00626 0.98364 0.94926 1.19125 0.96269 0.90576 0.93721 0.94814 1.21037 1.32853 1.00796 1.00270 0.91098 1.24974 0.95720 0.97233 0.95213 1.69909 1.46063 1.14605 1.23778 0.86817 0.80369 0.79485 0.81421 1.20860 1.22783 1.18750 1.22267 0.97736 0.96331 0.89640 1.22723 0.97113 0.98969 0.97606 1.22343 0.98553 0.99370 0.94867 1.23032 0.99589 0.97611 0.98104 1.21826 0.89068 0.88966 0.90480 1.22676 0.99351 1.01588 0.99926 1.86912 1.67481 1.39337 1.39081 0.92072 0.92384 0.92029 0.96561 0.89425 0.93446 0.91915 0.93911 0.92929 0.92815 0.95903 0.91118 0.89254 0.91765 0.90611 0.92175 0.91454 0.91542 0.91734 0.92903 0.91518 0.79741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.42 6.45 37.16 0.24 -2.18 16 2 C 0.12 1.76 0.56 -130.48 -0.07 1.69 16 3 N -0.51 -9.06 3.98 -217.74 -0.87 -9.92 16 4 C 0.06 1.09 4.23 -3.84 -0.02 1.07 16 5 C -0.12 -2.23 6.10 -26.65 -0.16 -2.40 16 6 C -0.12 -2.78 4.73 -26.61 -0.13 -2.91 16 7 C 0.02 0.55 1.85 -91.69 -0.17 0.38 16 8 H 0.03 0.88 7.21 -51.93 -0.37 0.51 16 9 C -0.51 -14.67 9.15 -34.44 -0.32 -14.99 16 10 H 0.07 2.18 7.99 -52.48 -0.42 1.76 16 11 C 0.07 2.06 5.45 -17.82 -0.10 1.96 16 12 N -0.90 -28.28 13.96 55.43 0.77 -27.51 16 13 Si 0.89 22.92 24.35 -169.99 -4.14 18.78 16 14 H -0.28 -7.10 6.89 56.52 0.39 -6.71 16 15 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 16 H -0.26 -6.60 6.53 56.52 0.37 -6.23 16 17 C 0.07 1.40 4.08 -3.83 -0.02 1.38 16 18 C -0.13 -1.75 5.81 -25.07 -0.15 -1.90 16 19 C -0.11 -1.40 6.91 -24.74 -0.17 -1.57 16 20 C -0.15 -1.54 6.09 -25.07 -0.15 -1.69 16 21 C 0.14 1.64 1.04 -89.50 -0.09 1.55 16 22 C -0.18 -1.74 7.53 37.16 0.28 -1.46 16 23 O -0.52 -6.77 9.38 -35.23 -0.33 -7.10 16 24 H 0.06 0.81 5.21 -51.93 -0.27 0.54 16 25 H 0.06 0.65 6.68 -51.93 -0.35 0.30 16 26 H 0.06 0.91 6.80 -51.93 -0.35 0.56 16 27 H 0.02 0.29 6.64 -51.93 -0.34 -0.06 16 28 H 0.09 1.40 5.43 -51.93 -0.28 1.12 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.04 1.03 3.34 -51.93 -0.17 0.86 16 32 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 34 H 0.02 0.49 6.87 -51.93 -0.36 0.13 16 35 H 0.07 1.47 5.40 -51.93 -0.28 1.19 16 36 H 0.09 1.42 5.18 -51.92 -0.27 1.15 16 37 H 0.06 0.78 7.85 -51.93 -0.41 0.37 16 38 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.65 8.06 -51.93 -0.42 0.24 16 41 H 0.07 0.61 7.84 -51.93 -0.41 0.21 16 42 H 0.06 0.68 6.76 -51.93 -0.35 0.33 16 43 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.07 0.61 6.70 -51.93 -0.35 0.26 16 45 H 0.36 3.14 9.06 45.56 0.41 3.55 16 LS Contribution 312.38 15.07 4.71 4.71 Total: -1.00 -31.52 312.38 -7.58 -39.10 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -6.71 Total: 3.01 kcal Atomic # 6 Polarization: -20.05 SS G_CDS: -1.02 Total: -21.07 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: -0.09 Total: -37.43 kcal Atomic # 8 Polarization: -6.77 SS G_CDS: -0.33 Total: -7.10 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -4.14 Total: 18.78 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.52 -7.58 -39.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397756391.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.448 kcal (2) G-P(sol) polarization free energy of solvation -31.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds