Wall clock time and date at job start Mon Mar 30 2020 07:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46892 * 110.01913 * 2 1 4 4 C 1.46840 * 111.00180 * 304.90481 * 3 2 1 5 5 C 1.53040 * 109.52582 * 185.84259 * 4 3 2 6 6 C 1.53122 * 109.27511 * 300.81803 * 5 4 3 7 7 C 1.53117 * 109.21298 * 57.62464 * 6 5 4 8 8 H 1.08996 * 109.50500 * 62.31650 * 7 6 5 9 9 C 1.50700 * 109.50513 * 182.43466 * 7 6 5 10 10 H 1.08005 * 120.00231 * 119.99625 * 9 7 6 11 11 C 1.37873 * 120.00063 * 299.99876 * 9 7 6 12 12 N 1.31515 * 119.99804 * 179.97438 * 11 9 7 13 13 Si 1.86793 * 120.00082 * 0.02562 * 11 9 7 14 14 H 1.48498 * 109.47698 * 89.99596 * 13 11 9 15 15 H 1.48500 * 109.47198 * 209.99997 * 13 11 9 16 16 H 1.48501 * 109.47131 * 329.99646 * 13 11 9 17 17 C 1.46846 * 111.00228 * 69.11807 * 3 2 1 18 18 C 1.54274 * 110.03053 * 121.39544 * 2 1 3 19 19 C 1.54883 * 104.19709 * 142.94103 * 18 2 1 20 20 C 1.54891 * 102.75072 * 322.05410 * 19 18 2 21 21 C 1.53875 * 110.07365 * 238.57974 * 2 1 3 22 22 C 1.53002 * 110.03083 * 359.97438 * 21 2 1 23 23 O 1.42896 * 110.03294 * 121.40934 * 21 2 1 24 24 H 1.08996 * 109.46995 * 60.70005 * 1 2 3 25 25 H 1.08997 * 109.47506 * 180.70213 * 1 2 3 26 26 H 1.09000 * 109.46769 * 300.69902 * 1 2 3 27 27 H 1.08994 * 109.46451 * 65.82345 * 4 3 2 28 28 H 1.08997 * 109.46231 * 305.85278 * 4 3 2 29 29 H 1.08997 * 109.50573 * 180.88064 * 5 4 3 30 30 H 1.08998 * 109.53676 * 60.77528 * 5 4 3 31 31 H 1.08995 * 109.52464 * 177.55774 * 6 5 4 32 32 H 1.08998 * 109.52702 * 297.68966 * 6 5 4 33 33 H 0.97005 * 119.99936 * 180.02562 * 12 11 9 34 34 H 1.09002 * 109.45728 * 294.17760 * 17 3 2 35 35 H 1.08999 * 109.46654 * 54.13908 * 17 3 2 36 36 H 1.09009 * 110.48274 * 261.61686 * 18 2 1 37 37 H 1.09001 * 110.48842 * 24.25624 * 18 2 1 38 38 H 1.09005 * 110.75456 * 80.37137 * 19 18 2 39 39 H 1.09002 * 110.75927 * 203.55340 * 19 18 2 40 40 H 1.08998 * 110.48596 * 156.61992 * 20 19 18 41 41 H 1.08997 * 110.48314 * 279.26661 * 20 19 18 42 42 H 1.09004 * 109.47113 * 59.99949 * 22 21 2 43 43 H 1.09001 * 109.47309 * 179.97438 * 22 21 2 44 44 H 1.08999 * 109.47225 * 299.99938 * 22 21 2 45 45 H 0.96696 * 114.00169 * 179.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0329 1.3802 0.0000 4 6 1.4760 2.1432 -1.1242 5 6 2.1302 3.5256 -1.1781 6 6 1.8697 4.2598 0.1401 7 6 2.4152 3.4220 1.2998 8 1 3.4939 3.3091 1.1914 9 6 2.1093 4.1101 2.6052 10 1 1.5055 3.6123 3.3496 11 6 2.6001 5.3752 2.8492 12 7 2.3327 5.9759 3.9882 13 14 3.6437 6.2366 1.5615 14 1 2.7659 7.0214 0.6568 15 1 4.6049 7.1484 2.2323 16 1 4.3903 5.2247 0.7716 17 6 1.7539 2.0420 1.2809 18 6 2.0584 -0.7551 1.2372 19 6 3.3143 -1.4996 0.7201 20 6 2.8890 -1.9400 -0.7026 21 6 2.0581 -0.7534 -1.2333 22 6 0.8879 -1.2678 -2.0741 23 8 2.8833 0.1098 -2.0181 24 1 -0.3633 0.5029 -0.8962 25 1 -0.3634 -1.0275 0.0126 26 1 -0.3633 0.5247 0.8837 27 1 0.4003 2.2555 -0.9896 28 1 1.6718 1.6123 -2.0558 29 1 1.7054 4.0974 -2.0032 30 1 3.2043 3.4150 -1.3270 31 1 2.3705 5.2278 0.1230 32 1 0.7975 4.4066 0.2696 33 1 2.6777 6.8661 4.1597 34 1 0.6768 2.1547 1.4043 35 1 2.1514 1.4375 2.0962 36 1 2.3290 -0.0528 2.0259 37 1 1.3145 -1.4660 1.5968 38 1 4.1712 -0.8273 0.6764 39 1 3.5354 -2.3646 1.3454 40 1 3.7656 -2.1026 -1.3296 41 1 2.2792 -2.8423 -0.6563 42 1 0.2786 -0.4257 -2.4024 43 1 1.2720 -1.7992 -2.9449 44 1 0.2793 -1.9445 -1.4743 45 1 3.2475 -0.3076 -2.8106 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397756391.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:47 Heat of formation + Delta-G solvation = -60.380691 kcal Electronic energy + Delta-G solvation = -22876.831682 eV Core-core repulsion = 19893.342794 eV Total energy + Delta-G solvation = -2983.488888 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.55430 -38.79649 -36.16683 -35.07568 -33.58666 -32.19956 -31.68832 -29.78945 -27.02293 -26.34199 -26.04601 -24.01524 -23.00125 -21.48745 -20.47102 -19.39395 -18.64599 -17.93189 -16.83629 -16.56877 -16.12621 -15.87351 -15.31453 -15.07196 -14.90450 -14.86591 -14.65335 -14.26242 -14.07986 -13.79607 -13.40698 -13.15238 -12.93246 -12.76828 -12.64132 -12.50656 -12.24939 -12.09657 -12.03257 -11.78902 -11.68587 -11.57112 -11.47846 -11.30652 -11.21268 -10.94146 -10.73293 -10.55085 -10.34020 -8.88755 -8.31743 -6.34333 1.27527 1.33820 1.45924 2.31585 3.00176 3.04185 3.45402 3.59880 3.78817 4.06149 4.10588 4.22575 4.26307 4.30742 4.38665 4.45071 4.53215 4.55294 4.58714 4.67924 4.72582 4.76543 4.84692 4.91396 4.94912 4.98300 5.01880 5.06180 5.15630 5.17424 5.19634 5.21719 5.27571 5.35391 5.47353 5.49277 5.51140 5.54751 5.65709 5.75962 6.25117 6.43584 6.53368 6.73739 7.19694 7.31362 8.85203 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.028551 B = 0.006255 C = 0.005886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.454860 B = 4475.238207 C = 4756.113031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.111 3.889 3 N -0.512 5.512 4 C 0.066 3.934 5 C -0.111 4.111 6 C -0.121 4.121 7 C 0.023 3.977 8 H 0.018 0.982 9 C -0.517 4.517 10 H 0.032 0.968 11 C 0.014 3.986 12 N -0.950 5.950 13 Si 0.951 3.049 14 H -0.268 1.268 15 H -0.297 1.297 16 H -0.252 1.252 17 C 0.081 3.919 18 C -0.131 4.131 19 C -0.114 4.114 20 C -0.137 4.137 21 C 0.140 3.860 22 C -0.172 4.172 23 O -0.548 6.548 24 H 0.063 0.937 25 H 0.085 0.915 26 H 0.036 0.964 27 H 0.015 0.985 28 H 0.112 0.888 29 H 0.074 0.926 30 H 0.057 0.943 31 H 0.031 0.969 32 H 0.044 0.956 33 H 0.265 0.735 34 H 0.009 0.991 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.082 0.918 38 H 0.049 0.951 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.056 0.944 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.249 -18.010 -15.815 24.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.021 3.979 3 N -0.235 5.235 4 C -0.061 4.061 5 C -0.149 4.149 6 C -0.158 4.158 7 C 0.004 3.996 8 H 0.036 0.964 9 C -0.556 4.556 10 H 0.050 0.950 11 C -0.182 4.182 12 N -0.590 5.590 13 Si 0.779 3.221 14 H -0.194 1.194 15 H -0.225 1.225 16 H -0.177 1.177 17 C -0.047 4.047 18 C -0.169 4.169 19 C -0.151 4.151 20 C -0.174 4.174 21 C 0.099 3.901 22 C -0.230 4.230 23 O -0.355 6.355 24 H 0.082 0.918 25 H 0.103 0.897 26 H 0.055 0.945 27 H 0.033 0.967 28 H 0.129 0.871 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.050 0.950 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.027 0.973 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.101 0.899 38 H 0.068 0.932 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.107 0.893 42 H 0.075 0.925 43 H 0.093 0.907 44 H 0.094 0.906 45 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -0.876 -17.465 -15.315 23.245 hybrid contribution -0.452 0.830 0.169 0.961 sum -1.328 -16.634 -15.145 22.536 Atomic orbital electron populations 1.22617 0.96356 1.03106 1.01387 1.21852 0.92318 0.88768 0.94948 1.61977 1.58683 1.01024 1.01859 1.22193 0.94501 0.93627 0.95756 1.21589 1.01063 0.96066 0.96163 1.21914 0.99692 0.97869 0.96336 1.19023 0.95597 0.92643 0.92324 0.96357 1.21347 1.31782 1.00965 1.01483 0.94977 1.25806 0.97111 0.98067 0.97263 1.70047 1.47782 1.15279 1.25929 0.85793 0.78841 0.78522 0.78964 1.19439 1.22476 1.17668 1.21934 0.96258 0.94746 0.91740 1.22745 0.98520 0.98869 0.96726 1.22322 0.96758 0.99255 0.96798 1.23010 1.00219 0.97738 0.96470 1.21791 0.90046 0.88608 0.89622 1.22611 0.98309 1.01590 1.00463 1.86813 1.67866 1.40550 1.40261 0.91833 0.89666 0.94465 0.96728 0.87072 0.90713 0.92412 0.95041 0.93760 0.92570 0.97268 0.91927 0.92452 0.89924 0.93179 0.90490 0.90169 0.89331 0.92539 0.90653 0.90568 0.77453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.39 6.45 71.98 0.46 -3.93 16 2 C 0.11 3.01 0.56 4.26 0.00 3.02 16 3 N -0.51 -17.95 3.98 -842.78 -3.36 -21.30 16 4 C 0.07 2.18 4.23 86.33 0.36 2.54 16 5 C -0.11 -4.04 6.10 30.65 0.19 -3.85 16 6 C -0.12 -5.46 4.73 30.67 0.15 -5.32 16 7 C 0.02 1.17 1.85 -11.49 -0.02 1.15 16 8 H 0.02 0.97 7.21 -2.39 -0.02 0.95 16 9 C -0.52 -31.09 9.15 25.60 0.23 -30.86 16 10 H 0.03 2.11 7.99 -2.91 -0.02 2.09 16 11 C 0.01 0.87 5.45 84.65 0.46 1.34 16 12 N -0.95 -61.48 13.96 21.45 0.30 -61.18 16 13 Si 0.95 47.98 24.35 68.60 1.67 49.65 16 14 H -0.27 -12.89 6.89 99.48 0.69 -12.20 16 15 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 16 H -0.25 -12.21 6.53 99.48 0.65 -11.56 16 17 C 0.08 3.48 4.08 86.33 0.35 3.84 16 18 C -0.13 -3.51 5.81 31.67 0.18 -3.33 16 19 C -0.11 -2.60 6.91 31.88 0.22 -2.38 16 20 C -0.14 -2.38 6.09 31.67 0.19 -2.18 16 21 C 0.14 2.86 1.04 -10.07 -0.01 2.85 16 22 C -0.17 -2.59 7.53 71.98 0.54 -2.05 16 23 O -0.55 -12.27 9.38 -148.98 -1.40 -13.67 16 24 H 0.06 1.55 5.21 -2.39 -0.01 1.54 16 25 H 0.08 1.64 6.68 -2.39 -0.02 1.62 16 26 H 0.04 1.09 6.80 -2.39 -0.02 1.08 16 27 H 0.01 0.49 6.64 -2.39 -0.02 0.47 16 28 H 0.11 3.20 5.43 -2.39 -0.01 3.18 16 29 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.03 1.48 3.34 -2.39 -0.01 1.47 16 32 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.27 16.07 8.31 -92.70 -0.77 15.30 16 34 H 0.01 0.41 6.87 -2.39 -0.02 0.40 16 35 H 0.06 2.77 5.40 -2.39 -0.01 2.76 16 36 H 0.06 1.90 5.18 -2.38 -0.01 1.89 16 37 H 0.08 1.87 7.85 -2.39 -0.02 1.85 16 38 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 39 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.08 1.23 8.06 -2.39 -0.02 1.21 16 41 H 0.09 1.19 7.84 -2.39 -0.02 1.17 16 42 H 0.06 0.96 6.76 -2.39 -0.02 0.95 16 43 H 0.07 0.82 8.14 -2.39 -0.02 0.81 16 44 H 0.08 1.01 6.70 -2.39 -0.02 1.00 16 45 H 0.38 5.10 9.06 -74.06 -0.67 4.43 16 Total: -1.00 -70.77 312.38 0.77 -70.00 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 0.23 Total: 15.66 kcal Atomic # 6 Polarization: -42.49 SS G_CDS: 3.32 Total: -39.17 kcal Atomic # 7 Polarization: -79.43 SS G_CDS: -3.06 Total: -82.49 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: -1.40 Total: -13.67 kcal Atomic # 14 Polarization: 47.98 SS G_CDS: 1.67 Total: 49.65 kcal Total: -70.77 0.77 -70.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397756391.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.623 kcal (2) G-P(sol) polarization free energy of solvation -70.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds