Wall clock time and date at job start Mon Mar 30 2020 07:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42900 * 110.05916 * 2 1 4 4 C 1.54374 * 110.04772 * 238.52840 * 2 1 3 5 5 C 1.54892 * 104.19807 * 217.09342 * 4 2 1 6 6 C 1.54886 * 102.74719 * 37.96524 * 5 4 2 7 7 C 1.53875 * 110.03353 * 121.41858 * 2 1 3 8 8 C 1.53005 * 110.03194 * 238.61944 * 7 2 1 9 9 N 1.46905 * 110.03147 * 359.97438 * 7 2 1 10 10 C 1.46839 * 111.00120 * 281.70544 * 9 7 2 11 11 C 1.53038 * 109.52642 * 174.16027 * 10 9 7 12 12 C 1.53120 * 109.27545 * 59.17575 * 11 10 9 13 13 C 1.53119 * 109.16052 * 302.34871 * 12 11 10 14 14 H 1.09005 * 109.50455 * 297.67057 * 13 12 11 15 15 C 1.50712 * 109.50203 * 177.59795 * 13 12 11 16 16 H 1.08000 * 119.99347 * 245.68338 * 15 13 12 17 17 C 1.37879 * 120.00108 * 65.68798 * 15 13 12 18 18 N 1.31510 * 119.99823 * 197.98006 * 17 15 13 19 19 Si 1.86800 * 119.99698 * 17.97318 * 17 15 13 20 20 H 1.48504 * 109.46660 * 180.02562 * 19 17 15 21 21 H 1.48499 * 109.47238 * 60.00599 * 19 17 15 22 22 H 1.48499 * 109.47245 * 299.99950 * 19 17 15 23 23 C 1.46842 * 110.99738 * 157.48985 * 9 7 2 24 24 H 1.09006 * 109.46930 * 314.34544 * 1 2 3 25 25 H 1.09003 * 109.47186 * 74.33938 * 1 2 3 26 26 H 1.08999 * 109.47162 * 194.34089 * 1 2 3 27 27 H 0.96705 * 114.00131 * 301.42005 * 3 2 1 28 28 H 1.08995 * 110.46606 * 98.42181 * 4 2 1 29 29 H 1.09003 * 110.61513 * 335.83758 * 4 2 1 30 30 H 1.09000 * 110.75215 * 279.64977 * 5 4 2 31 31 H 1.08996 * 110.75830 * 156.28141 * 5 4 2 32 32 H 1.09004 * 110.48126 * 203.37653 * 6 5 4 33 33 H 1.09000 * 110.59575 * 80.79516 * 6 5 4 34 34 H 1.09002 * 109.46995 * 180.68823 * 8 7 2 35 35 H 1.08999 * 109.46646 * 300.68817 * 8 7 2 36 36 H 1.08995 * 109.47000 * 60.68831 * 8 7 2 37 37 H 1.09000 * 109.46595 * 54.14030 * 10 9 7 38 38 H 1.09006 * 109.46297 * 294.17258 * 10 9 7 39 39 H 1.09000 * 109.50192 * 299.24027 * 11 10 9 40 40 H 1.08995 * 109.50611 * 179.11780 * 11 10 9 41 41 H 1.09002 * 109.52096 * 182.44831 * 12 11 10 42 42 H 1.09001 * 109.52586 * 62.25333 * 12 11 10 43 43 H 0.96997 * 119.99809 * 354.91886 * 18 17 15 44 44 H 1.09004 * 109.46191 * 65.82722 * 23 9 7 45 45 H 1.08996 * 109.46598 * 305.85769 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0201 1.3423 0.0000 4 6 2.0592 -0.7571 -1.2369 5 6 3.3146 -1.5015 -0.7183 6 6 2.8881 -1.9406 0.7045 7 6 2.0571 -0.7536 1.2337 8 6 2.9399 0.1707 2.0748 9 7 0.9328 -1.2460 2.0409 10 6 0.3516 -0.1657 2.8481 11 6 -0.9016 -0.6779 3.5617 12 6 -0.5256 -1.8627 4.4557 13 6 0.1215 -2.9538 3.5982 14 1 -0.5969 -3.3106 2.8602 15 6 0.5483 -4.0995 4.4796 16 1 1.5970 -4.3304 4.5948 17 6 -0.4001 -4.8526 5.1387 18 7 -0.0501 -5.6027 6.1606 19 14 -2.1821 -4.8072 4.5802 20 1 -2.9952 -5.6975 5.4471 21 1 -2.2714 -5.2704 3.1721 22 1 -2.6962 -3.4175 4.6779 23 6 1.3451 -2.3757 2.8836 24 1 -0.3633 0.7184 0.7350 25 1 -0.3634 0.2774 -0.9895 26 1 -0.3633 -0.9956 0.2545 27 1 1.7224 1.8698 -0.7539 28 1 2.3303 -0.0557 -2.0259 29 1 1.3163 -1.4681 -1.5985 30 1 4.1716 -0.8294 -0.6745 31 1 3.5340 -2.3689 -1.3407 32 1 3.7643 -2.1029 1.3323 33 1 2.2789 -2.8434 0.6607 34 1 3.3179 -0.3755 2.9391 35 1 3.7774 0.5211 1.4716 36 1 2.3532 1.0248 2.4129 37 1 0.0849 0.6689 2.1998 38 1 1.0800 0.1674 3.5875 39 1 -1.6359 -0.9983 2.8226 40 1 -1.3239 0.1196 4.1729 41 1 -1.4224 -2.2583 4.9325 42 1 0.1792 -1.5337 5.2193 43 1 0.8851 -5.6840 6.4048 44 1 2.0688 -2.0323 3.6228 45 1 1.7998 -3.1462 2.2611 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397756392.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:51 Heat of formation + Delta-G solvation = -48.671142 kcal Electronic energy + Delta-G solvation = -22825.719613 eV Core-core repulsion = 19842.738489 eV Total energy + Delta-G solvation = -2982.981124 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.45362 -37.45498 -35.04208 -33.41768 -31.94234 -30.89118 -29.76465 -28.75954 -26.15033 -24.72817 -24.10893 -22.68546 -21.26657 -20.30334 -19.01106 -18.12230 -17.33259 -16.29948 -15.93236 -15.64828 -14.58470 -14.42446 -13.84647 -13.60232 -13.39522 -13.20150 -12.94517 -12.80081 -12.68201 -12.27194 -12.13634 -11.93745 -11.67585 -11.54128 -11.22689 -11.05242 -10.84927 -10.68201 -10.62403 -10.54808 -10.37913 -10.18327 -9.98327 -9.75053 -9.70098 -9.51356 -9.13992 -8.67971 -8.12269 -7.65915 -6.40226 -4.00199 3.43345 3.48063 3.66100 4.06782 4.46235 4.54377 4.57729 4.83498 4.97948 5.30347 5.31673 5.33843 5.41929 5.49858 5.59736 5.65715 5.71724 5.82115 5.83050 5.86302 5.96214 6.02523 6.04587 6.06534 6.11199 6.18915 6.26549 6.33992 6.40821 6.41836 6.47243 6.50772 6.65401 6.66371 6.78339 6.93035 7.02523 7.38024 7.55051 7.68839 7.74600 7.79255 8.27951 8.42520 8.96084 9.67914 10.99752 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.027424 B = 0.006172 C = 0.005856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.775245 B = 4535.271563 C = 4780.552190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.138 3.862 3 O -0.558 6.558 4 C -0.144 4.144 5 C -0.120 4.120 6 C -0.120 4.120 7 C 0.120 3.880 8 C -0.155 4.155 9 N -0.525 5.525 10 C 0.053 3.947 11 C -0.120 4.120 12 C -0.124 4.124 13 C 0.029 3.971 14 H 0.027 0.973 15 C -0.598 4.598 16 H 0.052 0.948 17 C 0.031 3.969 18 N -0.910 5.910 19 Si 1.048 2.952 20 H -0.289 1.289 21 H -0.284 1.284 22 H -0.273 1.273 23 C 0.071 3.929 24 H 0.065 0.935 25 H 0.039 0.961 26 H 0.093 0.907 27 H 0.368 0.632 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.085 0.915 34 H 0.047 0.953 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.029 0.971 39 H 0.060 0.940 40 H 0.050 0.950 41 H 0.059 0.941 42 H 0.047 0.953 43 H 0.266 0.734 44 H 0.021 0.979 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.638 12.518 -13.987 18.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.097 3.903 3 O -0.363 6.363 4 C -0.182 4.182 5 C -0.158 4.158 6 C -0.158 4.158 7 C 0.029 3.971 8 C -0.213 4.213 9 N -0.249 5.249 10 C -0.075 4.075 11 C -0.158 4.158 12 C -0.162 4.162 13 C 0.009 3.991 14 H 0.045 0.955 15 C -0.636 4.636 16 H 0.070 0.930 17 C -0.174 4.174 18 N -0.545 5.545 19 Si 0.877 3.123 20 H -0.215 1.215 21 H -0.210 1.210 22 H -0.200 1.200 23 C -0.055 4.055 24 H 0.083 0.917 25 H 0.058 0.942 26 H 0.111 0.889 27 H 0.214 0.786 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.103 0.897 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.047 0.953 39 H 0.079 0.921 40 H 0.069 0.931 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.076 0.924 44 H 0.040 0.960 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.043 11.569 -13.358 17.702 hybrid contribution 2.012 1.047 -0.258 2.283 sum 3.055 12.616 -13.616 18.812 Atomic orbital electron populations 1.22591 0.94884 1.05223 1.00107 1.21745 0.93096 0.81470 0.93994 1.86596 1.75745 1.23626 1.50363 1.23024 0.98192 0.99764 0.97199 1.22402 0.97376 0.99567 0.96410 1.22649 0.99192 0.98174 0.95753 1.21502 0.89856 0.93298 0.92404 1.22116 1.00152 0.99734 0.99342 1.62335 1.28622 1.08425 1.25490 1.22288 0.96194 0.93692 0.95314 1.21684 0.96797 0.98557 0.98741 1.22104 1.00649 0.95355 0.98051 1.18977 0.92911 0.93402 0.93768 0.95512 1.21963 0.94838 1.15343 1.31446 0.92972 1.25746 1.05385 0.93706 0.92555 1.70865 1.19686 1.41639 1.22264 0.84003 0.75624 0.76594 0.76084 1.21539 1.21016 1.19957 1.22227 0.98453 0.91106 0.93747 0.91677 0.94218 0.88867 0.78600 0.91733 0.90677 0.91682 0.91621 0.91493 0.89659 0.93410 0.92339 0.92019 0.90956 0.95287 0.92112 0.93135 0.92231 0.93454 0.92426 0.96039 0.91193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.15 7.47 37.16 0.28 -1.88 16 2 C 0.14 1.74 1.20 -89.45 -0.11 1.63 16 3 O -0.56 -6.62 11.13 -35.23 -0.39 -7.01 16 4 C -0.14 -1.60 6.07 -25.01 -0.15 -1.75 16 5 C -0.12 -1.39 6.91 -24.74 -0.17 -1.57 16 6 C -0.12 -1.71 4.66 -25.08 -0.12 -1.82 16 7 C 0.12 1.78 0.59 -130.48 -0.08 1.70 16 8 C -0.15 -2.33 6.38 37.16 0.24 -2.10 16 9 N -0.52 -9.00 2.80 -217.74 -0.61 -9.61 16 10 C 0.05 0.88 3.67 -3.84 -0.01 0.87 16 11 C -0.12 -2.15 6.09 -26.65 -0.16 -2.31 16 12 C -0.12 -2.72 4.97 -26.61 -0.13 -2.85 16 13 C 0.03 0.68 1.84 -91.69 -0.17 0.51 16 14 H 0.03 0.65 6.79 -51.93 -0.35 0.30 16 15 C -0.60 -16.76 8.82 -34.43 -0.30 -17.06 16 16 H 0.05 1.58 7.99 -52.49 -0.42 1.16 16 17 C 0.03 0.89 5.34 -17.82 -0.10 0.79 16 18 N -0.91 -28.15 13.70 55.43 0.76 -27.39 16 19 Si 1.05 25.52 26.41 -169.99 -4.49 21.03 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 22 H -0.27 -6.15 5.57 56.52 0.31 -5.84 16 23 C 0.07 1.46 4.04 -3.84 -0.02 1.45 16 24 H 0.06 0.85 5.54 -51.93 -0.29 0.56 16 25 H 0.04 0.42 8.10 -51.93 -0.42 0.00 16 26 H 0.09 1.37 7.01 -51.93 -0.36 1.01 16 27 H 0.37 2.93 9.07 45.56 0.41 3.34 16 28 H 0.06 0.61 8.07 -51.93 -0.42 0.19 16 29 H 0.07 0.84 7.86 -51.93 -0.41 0.43 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.96 7.84 -51.93 -0.41 0.55 16 33 H 0.08 1.32 6.42 -51.93 -0.33 0.99 16 34 H 0.05 0.76 7.36 -51.93 -0.38 0.38 16 35 H 0.06 0.84 7.84 -51.93 -0.41 0.43 16 36 H 0.06 0.95 6.33 -51.93 -0.33 0.62 16 37 H 0.07 1.10 5.03 -51.93 -0.26 0.84 16 38 H 0.03 0.51 6.69 -51.93 -0.35 0.16 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.06 1.38 4.85 -51.93 -0.25 1.13 16 42 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.27 8.20 8.73 -40.82 -0.36 7.84 16 44 H 0.02 0.47 7.39 -51.93 -0.38 0.08 16 45 H 0.07 1.43 5.62 -51.93 -0.29 1.14 16 LS Contribution 317.08 15.07 4.78 4.78 Total: -1.00 -29.98 317.08 -7.96 -37.94 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -7.00 Total: 4.66 kcal Atomic # 6 Polarization: -23.40 SS G_CDS: -1.00 Total: -24.40 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: 0.15 Total: -36.99 kcal Atomic # 8 Polarization: -6.62 SS G_CDS: -0.39 Total: -7.01 kcal Atomic # 14 Polarization: 25.52 SS G_CDS: -4.49 Total: 21.03 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.98 -7.96 -37.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397756392.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.733 kcal (2) G-P(sol) polarization free energy of solvation -29.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds