Wall clock time and date at job start Mon Mar 30 2020 07:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42900 * 110.05916 * 2 1 4 4 C 1.54374 * 110.04772 * 238.52840 * 2 1 3 5 5 C 1.54892 * 104.19807 * 217.09342 * 4 2 1 6 6 C 1.54886 * 102.74719 * 37.96524 * 5 4 2 7 7 C 1.53875 * 110.03353 * 121.41858 * 2 1 3 8 8 C 1.53005 * 110.03194 * 238.61944 * 7 2 1 9 9 N 1.46905 * 110.03147 * 359.97438 * 7 2 1 10 10 C 1.46839 * 111.00120 * 281.70544 * 9 7 2 11 11 C 1.53038 * 109.52642 * 174.16027 * 10 9 7 12 12 C 1.53120 * 109.27545 * 59.17575 * 11 10 9 13 13 C 1.53119 * 109.16052 * 302.34871 * 12 11 10 14 14 H 1.09005 * 109.50455 * 297.67057 * 13 12 11 15 15 C 1.50712 * 109.50203 * 177.59795 * 13 12 11 16 16 H 1.08000 * 119.99347 * 245.68338 * 15 13 12 17 17 C 1.37879 * 120.00108 * 65.68798 * 15 13 12 18 18 N 1.31510 * 119.99823 * 197.98006 * 17 15 13 19 19 Si 1.86800 * 119.99698 * 17.97318 * 17 15 13 20 20 H 1.48504 * 109.46660 * 180.02562 * 19 17 15 21 21 H 1.48499 * 109.47238 * 60.00599 * 19 17 15 22 22 H 1.48499 * 109.47245 * 299.99950 * 19 17 15 23 23 C 1.46842 * 110.99738 * 157.48985 * 9 7 2 24 24 H 1.09006 * 109.46930 * 314.34544 * 1 2 3 25 25 H 1.09003 * 109.47186 * 74.33938 * 1 2 3 26 26 H 1.08999 * 109.47162 * 194.34089 * 1 2 3 27 27 H 0.96705 * 114.00131 * 301.42005 * 3 2 1 28 28 H 1.08995 * 110.46606 * 98.42181 * 4 2 1 29 29 H 1.09003 * 110.61513 * 335.83758 * 4 2 1 30 30 H 1.09000 * 110.75215 * 279.64977 * 5 4 2 31 31 H 1.08996 * 110.75830 * 156.28141 * 5 4 2 32 32 H 1.09004 * 110.48126 * 203.37653 * 6 5 4 33 33 H 1.09000 * 110.59575 * 80.79516 * 6 5 4 34 34 H 1.09002 * 109.46995 * 180.68823 * 8 7 2 35 35 H 1.08999 * 109.46646 * 300.68817 * 8 7 2 36 36 H 1.08995 * 109.47000 * 60.68831 * 8 7 2 37 37 H 1.09000 * 109.46595 * 54.14030 * 10 9 7 38 38 H 1.09006 * 109.46297 * 294.17258 * 10 9 7 39 39 H 1.09000 * 109.50192 * 299.24027 * 11 10 9 40 40 H 1.08995 * 109.50611 * 179.11780 * 11 10 9 41 41 H 1.09002 * 109.52096 * 182.44831 * 12 11 10 42 42 H 1.09001 * 109.52586 * 62.25333 * 12 11 10 43 43 H 0.96997 * 119.99809 * 354.91886 * 18 17 15 44 44 H 1.09004 * 109.46191 * 65.82722 * 23 9 7 45 45 H 1.08996 * 109.46598 * 305.85769 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0201 1.3423 0.0000 4 6 2.0592 -0.7571 -1.2369 5 6 3.3146 -1.5015 -0.7183 6 6 2.8881 -1.9406 0.7045 7 6 2.0571 -0.7536 1.2337 8 6 2.9399 0.1707 2.0748 9 7 0.9328 -1.2460 2.0409 10 6 0.3516 -0.1657 2.8481 11 6 -0.9016 -0.6779 3.5617 12 6 -0.5256 -1.8627 4.4557 13 6 0.1215 -2.9538 3.5982 14 1 -0.5969 -3.3106 2.8602 15 6 0.5483 -4.0995 4.4796 16 1 1.5970 -4.3304 4.5948 17 6 -0.4001 -4.8526 5.1387 18 7 -0.0501 -5.6027 6.1606 19 14 -2.1821 -4.8072 4.5802 20 1 -2.9952 -5.6975 5.4471 21 1 -2.2714 -5.2704 3.1721 22 1 -2.6962 -3.4175 4.6779 23 6 1.3451 -2.3757 2.8836 24 1 -0.3633 0.7184 0.7350 25 1 -0.3634 0.2774 -0.9895 26 1 -0.3633 -0.9956 0.2545 27 1 1.7224 1.8698 -0.7539 28 1 2.3303 -0.0557 -2.0259 29 1 1.3163 -1.4681 -1.5985 30 1 4.1716 -0.8294 -0.6745 31 1 3.5340 -2.3689 -1.3407 32 1 3.7643 -2.1029 1.3323 33 1 2.2789 -2.8434 0.6607 34 1 3.3179 -0.3755 2.9391 35 1 3.7774 0.5211 1.4716 36 1 2.3532 1.0248 2.4129 37 1 0.0849 0.6689 2.1998 38 1 1.0800 0.1674 3.5875 39 1 -1.6359 -0.9983 2.8226 40 1 -1.3239 0.1196 4.1729 41 1 -1.4224 -2.2583 4.9325 42 1 0.1792 -1.5337 5.2193 43 1 0.8851 -5.6840 6.4048 44 1 2.0688 -2.0323 3.6228 45 1 1.7998 -3.1462 2.2611 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397756392.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:51 Heat of formation + Delta-G solvation = -68.883989 kcal Electronic energy + Delta-G solvation = -22826.596108 eV Core-core repulsion = 19842.738489 eV Total energy + Delta-G solvation = -2983.857619 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.65323 -38.83376 -36.19992 -35.15721 -33.57042 -32.33101 -31.06986 -30.12362 -27.27004 -26.41443 -25.60791 -24.03677 -22.74586 -21.49349 -20.59329 -19.81808 -19.15753 -17.42450 -16.99545 -16.74430 -16.07155 -15.84284 -15.49664 -15.14397 -14.72035 -14.56624 -14.39748 -14.12119 -13.95691 -13.85571 -13.62280 -13.23064 -12.97381 -12.87752 -12.50724 -12.34790 -12.26606 -12.16911 -12.06324 -11.76497 -11.64165 -11.58637 -11.51809 -11.38662 -11.20956 -10.91970 -10.65036 -10.59602 -10.31143 -9.09096 -8.73728 -6.34408 1.46517 1.54391 1.74086 2.50221 2.85914 3.08329 3.42318 3.52626 3.84163 3.96774 4.08102 4.16538 4.25583 4.31334 4.32932 4.36899 4.46974 4.52784 4.61744 4.70275 4.73337 4.75904 4.86603 4.90324 4.92406 4.95472 4.98975 5.01886 5.08439 5.15492 5.19997 5.24021 5.24429 5.31995 5.40627 5.47550 5.52952 5.66983 5.77953 5.95691 6.05182 6.33108 6.37371 6.60491 7.04956 7.42939 8.64901 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.027424 B = 0.006172 C = 0.005856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.775245 B = 4535.271563 C = 4780.552190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.144 3.856 3 O -0.567 6.567 4 C -0.138 4.138 5 C -0.114 4.114 6 C -0.125 4.125 7 C 0.111 3.889 8 C -0.146 4.146 9 N -0.518 5.518 10 C 0.054 3.946 11 C -0.113 4.113 12 C -0.121 4.121 13 C 0.028 3.972 14 H 0.029 0.971 15 C -0.601 4.601 16 H 0.011 0.989 17 C -0.020 4.020 18 N -0.942 5.942 19 Si 1.086 2.914 20 H -0.293 1.293 21 H -0.264 1.264 22 H -0.241 1.241 23 C 0.085 3.915 24 H 0.061 0.939 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.388 0.612 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.025 0.975 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.099 0.901 38 H 0.017 0.983 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.050 0.950 42 H 0.027 0.973 43 H 0.249 0.751 44 H -0.003 1.003 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.167 14.978 -16.911 22.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.103 3.897 3 O -0.375 6.375 4 C -0.176 4.176 5 C -0.151 4.151 6 C -0.163 4.163 7 C 0.021 3.979 8 C -0.205 4.205 9 N -0.241 5.241 10 C -0.073 4.073 11 C -0.150 4.150 12 C -0.159 4.159 13 C 0.009 3.991 14 H 0.047 0.953 15 C -0.639 4.639 16 H 0.029 0.971 17 C -0.218 4.218 18 N -0.578 5.578 19 Si 0.907 3.093 20 H -0.219 1.219 21 H -0.189 1.189 22 H -0.165 1.165 23 C -0.042 4.042 24 H 0.080 0.920 25 H 0.083 0.917 26 H 0.091 0.909 27 H 0.238 0.762 28 H 0.108 0.892 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.044 0.956 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.117 0.883 38 H 0.036 0.964 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.068 0.932 42 H 0.046 0.954 43 H 0.058 0.942 44 H 0.015 0.985 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.404 14.067 -16.312 21.543 hybrid contribution 2.612 0.291 0.666 2.711 sum 2.208 14.357 -15.646 21.349 Atomic orbital electron populations 1.22521 0.94574 1.03817 1.01514 1.21557 0.93157 0.81962 0.92979 1.86547 1.75873 1.23248 1.51852 1.23013 0.97577 0.99995 0.97042 1.22388 0.98014 1.00275 0.94466 1.22640 0.98486 0.97442 0.97707 1.21697 0.89241 0.93830 0.93146 1.22028 1.00432 0.99329 0.98697 1.62340 1.29509 1.07849 1.24428 1.22341 0.95398 0.94072 0.95474 1.21641 0.97551 0.97363 0.98492 1.21969 0.99427 0.96523 0.97998 1.18918 0.94176 0.92586 0.93460 0.95262 1.22230 0.92897 1.16895 1.31927 0.97079 1.27222 1.09793 0.92868 0.91885 1.71000 1.18582 1.43836 1.24426 0.83561 0.70762 0.78448 0.76502 1.21911 1.18927 1.16503 1.21885 0.96433 0.92496 0.93396 0.92020 0.91676 0.90949 0.76236 0.89211 0.90508 0.91114 0.90423 0.92675 0.91358 0.95568 0.91430 0.92141 0.88297 0.96445 0.91023 0.90577 0.93195 0.95441 0.94205 0.98452 0.91772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.57 7.47 71.98 0.54 -3.03 16 2 C 0.14 3.16 1.20 -10.03 -0.01 3.14 16 3 O -0.57 -11.15 11.13 -148.98 -1.66 -12.81 16 4 C -0.14 -2.55 6.07 31.71 0.19 -2.36 16 5 C -0.11 -2.37 6.91 31.89 0.22 -2.15 16 6 C -0.12 -3.49 4.66 31.67 0.15 -3.34 16 7 C 0.11 3.13 0.59 4.25 0.00 3.13 16 8 C -0.15 -4.27 6.38 71.98 0.46 -3.82 16 9 N -0.52 -17.20 2.80 -842.79 -2.36 -19.57 16 10 C 0.05 1.71 3.67 86.33 0.32 2.03 16 11 C -0.11 -3.74 6.09 30.65 0.19 -3.56 16 12 C -0.12 -5.26 4.97 30.67 0.15 -5.11 16 13 C 0.03 1.33 1.84 -11.48 -0.02 1.31 16 14 H 0.03 1.39 6.79 -2.38 -0.02 1.38 16 15 C -0.60 -35.14 8.82 25.60 0.23 -34.91 16 16 H 0.01 0.70 7.99 -2.91 -0.02 0.68 16 17 C -0.02 -1.21 5.34 84.66 0.45 -0.76 16 18 N -0.94 -60.58 13.70 21.45 0.29 -60.29 16 19 Si 1.09 50.99 26.41 68.60 1.81 52.80 16 20 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 21 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 22 H -0.24 -10.01 5.57 99.48 0.55 -9.46 16 23 C 0.09 3.59 4.04 86.33 0.35 3.94 16 24 H 0.06 1.35 5.54 -2.38 -0.01 1.33 16 25 H 0.06 1.07 8.10 -2.39 -0.02 1.05 16 26 H 0.07 1.89 7.01 -2.39 -0.02 1.88 16 27 H 0.39 4.29 9.07 -74.05 -0.67 3.62 16 28 H 0.09 1.25 8.07 -2.39 -0.02 1.23 16 29 H 0.08 1.42 7.86 -2.39 -0.02 1.41 16 30 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.05 1.62 7.84 -2.38 -0.02 1.60 16 33 H 0.07 2.13 6.42 -2.39 -0.02 2.11 16 34 H 0.03 0.85 7.36 -2.39 -0.02 0.83 16 35 H 0.07 1.83 7.84 -2.39 -0.02 1.81 16 36 H 0.06 1.77 6.33 -2.39 -0.02 1.75 16 37 H 0.10 2.66 5.03 -2.39 -0.01 2.65 16 38 H 0.02 0.59 6.69 -2.38 -0.02 0.58 16 39 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.05 2.24 4.85 -2.39 -0.01 2.22 16 42 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.25 16.31 8.73 -92.71 -0.81 15.50 16 44 H 0.00 -0.13 7.39 -2.39 -0.02 -0.15 16 45 H 0.06 2.74 5.62 -2.39 -0.01 2.73 16 Total: -1.00 -67.55 317.08 1.40 -66.15 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: 0.11 Total: 19.20 kcal Atomic # 6 Polarization: -48.69 SS G_CDS: 3.21 Total: -45.48 kcal Atomic # 7 Polarization: -77.79 SS G_CDS: -2.07 Total: -79.86 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: -1.66 Total: -12.81 kcal Atomic # 14 Polarization: 50.99 SS G_CDS: 1.81 Total: 52.80 kcal Total: -67.55 1.40 -66.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397756392.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.738 kcal (2) G-P(sol) polarization free energy of solvation -67.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds