Wall clock time and date at job start Mon Mar 30 2020 06:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99648 * 2 1 4 4 H 1.48495 * 109.47123 * 240.00035 * 3 2 1 5 5 H 1.48500 * 109.47430 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47133 * 119.99954 * 3 2 1 7 7 C 1.37877 * 120.00326 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00063 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00182 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.49844 * 59.99758 * 9 7 2 11 11 C 1.53120 * 109.50182 * 299.92721 * 9 7 2 12 12 C 1.53121 * 109.16102 * 182.36457 * 11 9 7 13 13 C 1.53043 * 109.27933 * 57.64708 * 12 11 9 14 14 N 1.46842 * 109.52386 * 300.82295 * 13 12 11 15 15 C 1.46900 * 111.00157 * 185.83406 * 14 13 12 16 16 C 1.53005 * 109.46403 * 75.90165 * 15 14 13 17 17 C 1.53005 * 109.46746 * 185.25828 * 16 15 14 18 18 C 1.52996 * 109.47165 * 179.97438 * 17 16 15 19 19 C 1.52999 * 109.46985 * 59.99922 * 18 17 16 20 20 O 1.42907 * 109.47428 * 60.00346 * 19 18 17 21 21 C 1.52997 * 109.47323 * 299.99843 * 19 18 17 22 22 C 1.52999 * 109.47197 * 65.25878 * 16 15 14 23 23 C 1.46854 * 111.19829 * 61.74468 * 14 13 12 24 24 H 0.96996 * 119.99989 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.52129 * 302.26131 * 11 9 7 26 26 H 1.08995 * 109.52554 * 62.39474 * 11 9 7 27 27 H 1.09000 * 109.50555 * 177.59078 * 12 11 9 28 28 H 1.09003 * 109.49895 * 297.71200 * 12 11 9 29 29 H 1.08999 * 109.45768 * 60.83845 * 13 12 11 30 30 H 1.08996 * 109.46039 * 180.80247 * 13 12 11 31 31 H 1.08999 * 109.47611 * 195.90115 * 15 14 13 32 32 H 1.09002 * 109.47338 * 315.90747 * 15 14 13 33 33 H 1.08998 * 109.47266 * 305.25461 * 16 15 14 34 34 H 1.09008 * 109.46981 * 299.99918 * 17 16 15 35 35 H 1.08997 * 109.47471 * 60.00135 * 17 16 15 36 36 H 1.08996 * 109.47340 * 300.00222 * 18 17 16 37 37 H 1.09002 * 109.47564 * 179.97438 * 18 17 16 38 38 H 1.09000 * 109.47236 * 179.97438 * 19 18 17 39 39 H 0.96701 * 113.99937 * 59.99216 * 20 19 18 40 40 H 1.08996 * 109.47754 * 300.00127 * 21 19 18 41 41 H 1.08998 * 109.47305 * 179.97438 * 21 19 18 42 42 H 1.08993 * 109.47372 * 299.99863 * 22 16 15 43 43 H 1.09006 * 109.46718 * 60.00161 * 22 16 15 44 44 H 1.08996 * 109.46399 * 178.24231 * 23 14 13 45 45 H 1.08991 * 109.46606 * 58.26654 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1940 -0.0010 9 6 1.2513 -2.4992 -0.0005 10 1 0.6241 -2.5572 -0.8901 11 6 0.3725 -2.5822 1.2507 12 6 -0.3438 -3.9353 1.2729 13 6 0.6957 -5.0580 1.2378 14 7 1.5101 -4.9349 0.0221 15 6 2.4268 -6.0745 -0.1151 16 6 1.6462 -7.3030 -0.5868 17 6 2.5728 -8.5204 -0.6040 18 6 1.7922 -9.7490 -1.0751 19 6 1.2511 -9.4999 -2.4844 20 8 2.3405 -9.2568 -3.3768 21 6 0.3245 -8.2826 -2.4672 22 6 1.1056 -7.0535 -1.9962 23 6 2.2445 -3.6634 0.0013 24 1 -0.4850 0.8400 0.0004 25 1 0.9952 -2.4851 2.1401 26 1 -0.3643 -1.7792 1.2323 27 1 -0.9378 -4.0177 2.1831 28 1 -0.9960 -4.0160 0.4033 29 1 1.3389 -4.9848 2.1147 30 1 0.1885 -6.0227 1.2391 31 1 3.2000 -5.8332 -0.8445 32 1 2.8899 -6.2864 0.8486 33 1 0.8151 -7.4886 0.0935 34 1 3.4040 -8.3347 -1.2844 35 1 2.9579 -8.6981 0.4001 36 1 0.9612 -9.9344 -0.3945 37 1 2.4524 -10.6162 -1.0878 38 1 0.6953 -10.3753 -2.8202 39 1 2.9697 -9.9885 -3.4379 40 1 -0.5065 -8.4679 -1.7866 41 1 -0.0606 -8.1049 -3.4713 42 1 0.4456 -6.1863 -1.9840 43 1 1.9369 -6.8680 -2.6765 44 1 2.8621 -3.6153 -0.8955 45 1 2.8804 -3.5968 0.8840 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397771648.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:57 Heat of formation + Delta-G solvation = -81.110901 kcal Electronic energy + Delta-G solvation = -21521.652648 eV Core-core repulsion = 18537.264830 eV Total energy + Delta-G solvation = -2984.387818 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.43585 -37.96577 -35.47242 -33.47303 -31.82182 -30.76117 -30.02599 -29.48163 -25.19932 -24.89595 -22.73698 -22.10940 -21.56661 -20.46831 -19.45360 -18.51232 -16.92818 -16.29764 -15.84307 -15.05497 -14.77841 -14.46719 -14.30588 -13.94912 -13.36027 -13.22929 -12.90116 -12.82462 -12.52253 -12.23694 -12.12521 -11.89056 -11.87537 -11.44212 -11.05033 -10.95949 -10.90051 -10.74830 -10.63415 -10.59498 -10.21683 -9.96125 -9.90790 -9.77632 -9.72146 -9.39657 -8.92321 -8.65323 -8.24976 -7.54107 -5.92675 -3.98680 3.35291 3.39788 3.42382 4.17584 4.41038 4.55274 4.72228 4.78045 4.87844 5.15456 5.31924 5.37164 5.41360 5.47903 5.58211 5.59580 5.71381 5.77379 5.82670 5.92569 5.95864 6.03333 6.09209 6.15358 6.19659 6.28581 6.38422 6.40001 6.49591 6.58860 6.68415 6.77603 6.79292 6.82003 7.04276 7.28528 7.47194 7.56640 7.76233 7.81093 7.92823 8.14967 8.23309 8.54093 9.05300 9.65274 11.13230 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.032789 B = 0.004054 C = 0.003927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.728052 B = 6904.690031 C = 7128.850660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.279 1.279 7 C -0.515 4.515 8 H 0.052 0.948 9 C 0.055 3.945 10 H 0.034 0.966 11 C -0.110 4.110 12 C -0.117 4.117 13 C 0.064 3.936 14 N -0.535 5.535 15 C 0.060 3.940 16 C -0.078 4.078 17 C -0.110 4.110 18 C -0.149 4.149 19 C 0.105 3.895 20 O -0.561 6.561 21 C -0.114 4.114 22 C -0.100 4.100 23 C 0.068 3.932 24 H 0.259 0.741 25 H 0.028 0.972 26 H 0.090 0.910 27 H 0.044 0.956 28 H 0.060 0.940 29 H 0.020 0.980 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.024 0.976 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.055 0.945 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.047 0.953 39 H 0.371 0.629 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.078 0.922 43 H 0.064 0.936 44 H 0.058 0.942 45 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.826 -19.139 -1.274 19.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.138 4.138 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.553 4.553 8 H 0.070 0.930 9 C 0.037 3.963 10 H 0.052 0.948 11 C -0.148 4.148 12 C -0.155 4.155 13 C -0.064 4.064 14 N -0.259 5.259 15 C -0.069 4.069 16 C -0.097 4.097 17 C -0.148 4.148 18 C -0.187 4.187 19 C 0.046 3.954 20 O -0.365 6.365 21 C -0.151 4.151 22 C -0.138 4.138 23 C -0.059 4.059 24 H 0.069 0.931 25 H 0.047 0.953 26 H 0.108 0.892 27 H 0.062 0.938 28 H 0.078 0.922 29 H 0.038 0.962 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.042 0.958 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.217 0.783 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.096 0.904 43 H 0.083 0.917 44 H 0.076 0.924 45 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 1.037 -18.427 -1.747 18.539 hybrid contribution 1.338 0.298 0.935 1.660 sum 2.375 -18.129 -0.812 18.302 Atomic orbital electron populations 1.69884 1.05818 1.26348 1.50718 1.24926 0.94813 0.98875 0.95180 0.86702 0.79623 0.83373 0.78526 1.20311 1.21338 1.20437 1.21128 0.92772 0.90771 1.50660 0.92976 1.18650 0.92632 0.90276 0.94785 0.94799 1.21645 0.99992 0.94726 0.98455 1.21670 0.97215 0.96559 1.00020 1.22038 0.95685 0.98520 0.90189 1.61937 1.24200 1.02190 1.37569 1.22101 0.94596 0.91261 0.98911 1.21112 0.97601 0.93346 0.97596 1.21475 0.98624 0.94194 1.00537 1.22213 1.00547 0.98260 0.97657 1.21808 0.87797 0.97509 0.88279 1.86580 1.38483 1.45558 1.65927 1.21591 0.97085 0.94748 1.01674 1.21369 1.00262 0.96947 0.95202 1.22306 0.96342 0.88671 0.98542 0.93061 0.95314 0.89193 0.93756 0.92150 0.96217 0.92522 0.91442 0.95782 0.91699 0.91431 0.92629 0.91279 0.92255 0.93499 0.78320 0.91066 0.91669 0.90378 0.91721 0.92392 0.96584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.65 11.36 55.43 0.63 -25.02 16 2 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 3 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.51 -14.33 8.56 -34.44 -0.29 -14.63 16 8 H 0.05 1.43 7.74 -52.48 -0.41 1.03 16 9 C 0.06 1.41 2.26 -91.69 -0.21 1.20 16 10 H 0.03 0.96 8.14 -51.93 -0.42 0.53 16 11 C -0.11 -2.65 5.03 -26.61 -0.13 -2.79 16 12 C -0.12 -2.32 6.09 -26.65 -0.16 -2.49 16 13 C 0.06 1.14 5.29 -3.83 -0.02 1.12 16 14 N -0.53 -9.97 4.05 -234.67 -0.95 -10.92 16 15 C 0.06 0.93 4.39 -3.82 -0.02 0.91 16 16 C -0.08 -1.02 2.25 -90.61 -0.20 -1.22 16 17 C -0.11 -1.20 5.06 -26.73 -0.14 -1.34 16 18 C -0.15 -1.35 5.64 -26.73 -0.15 -1.50 16 19 C 0.10 1.03 3.77 -26.73 -0.10 0.93 16 20 O -0.56 -5.91 11.97 -35.23 -0.42 -6.33 16 21 C -0.11 -1.30 5.67 -26.70 -0.15 -1.46 16 22 C -0.10 -1.39 4.95 -26.70 -0.13 -1.52 16 23 C 0.07 1.49 4.65 -3.83 -0.02 1.47 16 24 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 25 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.09 2.42 6.15 -51.93 -0.32 2.10 16 27 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.90 6.65 -51.93 -0.35 0.55 16 31 H 0.07 1.07 7.79 -51.93 -0.40 0.66 16 32 H 0.02 0.37 8.00 -51.93 -0.42 -0.05 16 33 H 0.06 0.87 6.70 -51.93 -0.35 0.52 16 34 H 0.07 0.78 7.68 -51.92 -0.40 0.38 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.37 2.35 9.08 45.56 0.41 2.76 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.08 1.25 7.76 -51.93 -0.40 0.85 16 43 H 0.06 0.98 7.68 -51.93 -0.40 0.58 16 44 H 0.06 1.26 7.93 -51.93 -0.41 0.85 16 45 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 336.33 15.07 5.07 5.07 Total: -1.00 -29.26 336.33 -10.16 -39.42 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -7.65 Total: 0.91 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: -1.82 Total: -19.62 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: -0.32 Total: -35.94 kcal Atomic # 8 Polarization: -5.91 SS G_CDS: -0.42 Total: -6.33 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.26 -10.16 -39.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397771648.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.691 kcal (2) G-P(sol) polarization free energy of solvation -29.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds