Wall clock time and date at job start Mon Mar 30 2020 06:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99648 * 2 1 4 4 H 1.48495 * 109.47123 * 240.00035 * 3 2 1 5 5 H 1.48500 * 109.47430 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47133 * 119.99954 * 3 2 1 7 7 C 1.37877 * 120.00326 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00063 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00182 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.49844 * 59.99758 * 9 7 2 11 11 C 1.53120 * 109.50182 * 299.92721 * 9 7 2 12 12 C 1.53121 * 109.16102 * 182.36457 * 11 9 7 13 13 C 1.53043 * 109.27933 * 57.64708 * 12 11 9 14 14 N 1.46842 * 109.52386 * 300.82295 * 13 12 11 15 15 C 1.46900 * 111.00157 * 185.83406 * 14 13 12 16 16 C 1.53005 * 109.46403 * 75.90165 * 15 14 13 17 17 C 1.53005 * 109.46746 * 185.25828 * 16 15 14 18 18 C 1.52996 * 109.47165 * 179.97438 * 17 16 15 19 19 C 1.52999 * 109.46985 * 59.99922 * 18 17 16 20 20 O 1.42907 * 109.47428 * 60.00346 * 19 18 17 21 21 C 1.52997 * 109.47323 * 299.99843 * 19 18 17 22 22 C 1.52999 * 109.47197 * 65.25878 * 16 15 14 23 23 C 1.46854 * 111.19829 * 61.74468 * 14 13 12 24 24 H 0.96996 * 119.99989 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.52129 * 302.26131 * 11 9 7 26 26 H 1.08995 * 109.52554 * 62.39474 * 11 9 7 27 27 H 1.09000 * 109.50555 * 177.59078 * 12 11 9 28 28 H 1.09003 * 109.49895 * 297.71200 * 12 11 9 29 29 H 1.08999 * 109.45768 * 60.83845 * 13 12 11 30 30 H 1.08996 * 109.46039 * 180.80247 * 13 12 11 31 31 H 1.08999 * 109.47611 * 195.90115 * 15 14 13 32 32 H 1.09002 * 109.47338 * 315.90747 * 15 14 13 33 33 H 1.08998 * 109.47266 * 305.25461 * 16 15 14 34 34 H 1.09008 * 109.46981 * 299.99918 * 17 16 15 35 35 H 1.08997 * 109.47471 * 60.00135 * 17 16 15 36 36 H 1.08996 * 109.47340 * 300.00222 * 18 17 16 37 37 H 1.09002 * 109.47564 * 179.97438 * 18 17 16 38 38 H 1.09000 * 109.47236 * 179.97438 * 19 18 17 39 39 H 0.96701 * 113.99937 * 59.99216 * 20 19 18 40 40 H 1.08996 * 109.47754 * 300.00127 * 21 19 18 41 41 H 1.08998 * 109.47305 * 179.97438 * 21 19 18 42 42 H 1.08993 * 109.47372 * 299.99863 * 22 16 15 43 43 H 1.09006 * 109.46718 * 60.00161 * 22 16 15 44 44 H 1.08996 * 109.46399 * 178.24231 * 23 14 13 45 45 H 1.08991 * 109.46606 * 58.26654 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1940 -0.0010 9 6 1.2513 -2.4992 -0.0005 10 1 0.6241 -2.5572 -0.8901 11 6 0.3725 -2.5822 1.2507 12 6 -0.3438 -3.9353 1.2729 13 6 0.6957 -5.0580 1.2378 14 7 1.5101 -4.9349 0.0221 15 6 2.4268 -6.0745 -0.1151 16 6 1.6462 -7.3030 -0.5868 17 6 2.5728 -8.5204 -0.6040 18 6 1.7922 -9.7490 -1.0751 19 6 1.2511 -9.4999 -2.4844 20 8 2.3405 -9.2568 -3.3768 21 6 0.3245 -8.2826 -2.4672 22 6 1.1056 -7.0535 -1.9962 23 6 2.2445 -3.6634 0.0013 24 1 -0.4850 0.8400 0.0004 25 1 0.9952 -2.4851 2.1401 26 1 -0.3643 -1.7792 1.2323 27 1 -0.9378 -4.0177 2.1831 28 1 -0.9960 -4.0160 0.4033 29 1 1.3389 -4.9848 2.1147 30 1 0.1885 -6.0227 1.2391 31 1 3.2000 -5.8332 -0.8445 32 1 2.8899 -6.2864 0.8486 33 1 0.8151 -7.4886 0.0935 34 1 3.4040 -8.3347 -1.2844 35 1 2.9579 -8.6981 0.4001 36 1 0.9612 -9.9344 -0.3945 37 1 2.4524 -10.6162 -1.0878 38 1 0.6953 -10.3753 -2.8202 39 1 2.9697 -9.9885 -3.4379 40 1 -0.5065 -8.4679 -1.7866 41 1 -0.0606 -8.1049 -3.4713 42 1 0.4456 -6.1863 -1.9840 43 1 1.9369 -6.8680 -2.6765 44 1 2.8621 -3.6153 -0.8955 45 1 2.8804 -3.5968 0.8840 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397771648.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:57 Heat of formation + Delta-G solvation = -99.572638 kcal Electronic energy + Delta-G solvation = -21522.453209 eV Core-core repulsion = 18537.264830 eV Total energy + Delta-G solvation = -2985.188379 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.50395 -39.37032 -36.60801 -35.17775 -33.46296 -31.74058 -31.64190 -30.80654 -26.93168 -26.49118 -23.86467 -23.34593 -23.28169 -21.60109 -20.46977 -20.32050 -18.41388 -17.67744 -16.79435 -16.75493 -16.24143 -15.77984 -15.45770 -15.33995 -14.95900 -14.48760 -14.42200 -14.21756 -14.00949 -13.62050 -13.37157 -13.12494 -12.88029 -12.83796 -12.68346 -12.66057 -12.52641 -12.09050 -11.96671 -11.84752 -11.69985 -11.66881 -11.34965 -11.17016 -10.97117 -10.67289 -10.64745 -10.49810 -10.35604 -9.05859 -8.07650 -6.22139 1.40956 1.42532 1.50156 2.42785 3.11195 3.18921 3.48638 3.86742 3.90630 3.95221 4.20841 4.21855 4.29746 4.32951 4.46418 4.53181 4.58634 4.61216 4.63149 4.70170 4.71365 4.81328 4.88085 4.92361 4.97677 5.01597 5.09835 5.16827 5.19331 5.20224 5.27827 5.34658 5.40615 5.44778 5.52194 5.61065 5.63726 5.69650 5.98220 6.14145 6.23124 6.42646 6.47915 6.90319 7.03440 7.45574 8.96769 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.032789 B = 0.004054 C = 0.003927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.728052 B = 6904.690031 C = 7128.850660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.015 3.985 3 Si 0.954 3.046 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.539 4.539 8 H 0.049 0.951 9 C 0.054 3.946 10 H -0.005 1.005 11 C -0.103 4.103 12 C -0.110 4.110 13 C 0.068 3.932 14 N -0.543 5.543 15 C 0.061 3.939 16 C -0.069 4.069 17 C -0.106 4.106 18 C -0.143 4.143 19 C 0.105 3.895 20 O -0.583 6.583 21 C -0.115 4.115 22 C -0.095 4.095 23 C 0.083 3.917 24 H 0.260 0.740 25 H 0.021 0.979 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.049 0.951 29 H 0.023 0.977 30 H 0.088 0.912 31 H 0.059 0.941 32 H 0.034 0.966 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.068 0.932 39 H 0.389 0.611 40 H 0.083 0.917 41 H 0.057 0.943 42 H 0.047 0.953 43 H 0.044 0.956 44 H 0.050 0.950 45 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.368 -21.326 -0.500 21.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.184 4.184 3 Si 0.780 3.220 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.578 4.578 8 H 0.068 0.932 9 C 0.035 3.965 10 H 0.013 0.987 11 C -0.141 4.141 12 C -0.147 4.147 13 C -0.060 4.060 14 N -0.267 5.267 15 C -0.067 4.067 16 C -0.088 4.088 17 C -0.144 4.144 18 C -0.181 4.181 19 C 0.047 3.953 20 O -0.391 6.391 21 C -0.152 4.152 22 C -0.133 4.133 23 C -0.045 4.045 24 H 0.070 0.930 25 H 0.040 0.960 26 H 0.076 0.924 27 H 0.088 0.912 28 H 0.068 0.932 29 H 0.041 0.959 30 H 0.106 0.894 31 H 0.077 0.923 32 H 0.052 0.948 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.085 0.915 39 H 0.238 0.762 40 H 0.102 0.898 41 H 0.075 0.925 42 H 0.066 0.934 43 H 0.063 0.937 44 H 0.069 0.931 45 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges 1.592 -20.644 -0.975 20.728 hybrid contribution 1.163 0.987 0.650 1.658 sum 2.755 -19.657 -0.325 19.852 Atomic orbital electron populations 1.70031 1.07165 1.27130 1.51103 1.25717 0.95671 1.02296 0.94711 0.85675 0.78440 0.79120 0.78786 1.19730 1.20786 1.19657 1.21504 0.92924 0.92315 1.51029 0.93234 1.18568 0.92962 0.91252 0.93718 0.98715 1.21450 0.99044 0.96386 0.97237 1.21579 0.97544 0.94823 1.00803 1.22038 0.95114 0.99007 0.89795 1.61889 1.24730 1.01777 1.38316 1.22185 0.94320 0.90920 0.99285 1.21057 0.97883 0.93167 0.96721 1.21432 0.98037 0.93844 1.01112 1.22186 1.00984 0.97926 0.96960 1.21818 0.87589 0.96976 0.88923 1.86543 1.39218 1.47112 1.66219 1.21606 0.97671 0.94556 1.01405 1.21250 0.99249 0.97182 0.95636 1.21964 0.95270 0.89303 0.97965 0.93048 0.96043 0.92413 0.91249 0.93192 0.95892 0.89363 0.92275 0.94755 0.91199 0.92235 0.91574 0.90374 0.89961 0.91460 0.76245 0.89835 0.92470 0.93373 0.93708 0.93109 0.96979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.35 11.36 21.45 0.24 -54.11 16 2 C 0.01 0.85 5.30 84.65 0.45 1.30 16 3 Si 0.95 44.69 29.54 68.60 2.03 46.72 16 4 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 5 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 6 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 7 C -0.54 -30.94 8.56 25.60 0.22 -30.72 16 8 H 0.05 2.79 7.74 -2.91 -0.02 2.76 16 9 C 0.05 2.85 2.26 -11.49 -0.03 2.82 16 10 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 11 C -0.10 -5.09 5.03 30.67 0.15 -4.94 16 12 C -0.11 -4.32 6.09 30.65 0.19 -4.13 16 13 C 0.07 2.33 5.29 86.33 0.46 2.79 16 14 N -0.54 -20.14 4.05 -896.36 -3.63 -23.77 16 15 C 0.06 1.82 4.39 86.30 0.38 2.20 16 16 C -0.07 -1.70 2.25 -10.79 -0.02 -1.72 16 17 C -0.11 -2.02 5.06 30.59 0.15 -1.86 16 18 C -0.14 -2.05 5.64 30.59 0.17 -1.88 16 19 C 0.11 1.78 3.77 30.59 0.12 1.89 16 20 O -0.58 -11.14 11.97 -148.98 -1.78 -12.92 16 21 C -0.11 -2.48 5.67 30.61 0.17 -2.30 16 22 C -0.10 -2.62 4.95 30.61 0.15 -2.47 16 23 C 0.08 3.69 4.65 86.32 0.40 4.09 16 24 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 25 H 0.02 1.05 8.14 -2.38 -0.02 1.03 16 26 H 0.06 3.22 6.15 -2.39 -0.01 3.20 16 27 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 28 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.02 0.78 8.14 -2.39 -0.02 0.77 16 30 H 0.09 2.51 6.65 -2.39 -0.02 2.50 16 31 H 0.06 1.86 7.79 -2.39 -0.02 1.85 16 32 H 0.03 0.97 8.00 -2.39 -0.02 0.95 16 33 H 0.07 1.67 6.70 -2.39 -0.02 1.65 16 34 H 0.06 1.24 7.68 -2.38 -0.02 1.22 16 35 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.39 3.96 9.08 -74.06 -0.67 3.29 16 40 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.05 1.58 7.76 -2.39 -0.02 1.56 16 43 H 0.04 1.38 7.68 -2.38 -0.02 1.36 16 44 H 0.05 2.29 7.93 -2.39 -0.02 2.27 16 45 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 Total: -1.00 -65.01 336.33 0.08 -64.93 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: 0.26 Total: 14.08 kcal Atomic # 6 Polarization: -37.90 SS G_CDS: 2.96 Total: -34.93 kcal Atomic # 7 Polarization: -74.49 SS G_CDS: -3.39 Total: -77.87 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: -1.78 Total: -12.92 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -65.01 0.08 -64.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397771648.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.645 kcal (2) G-P(sol) polarization free energy of solvation -65.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds