Wall clock time and date at job start Mon Mar 30 2020 07:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00055 * 2 1 4 4 H 1.48498 * 109.47325 * 264.99719 * 3 2 1 5 5 H 1.48505 * 109.46745 * 145.00001 * 3 2 1 6 6 H 1.48501 * 109.47161 * 25.00036 * 3 2 1 7 7 C 1.37873 * 119.99746 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00233 * 185.14591 * 7 2 1 9 9 C 1.50701 * 120.00106 * 5.14716 * 7 2 1 10 10 H 1.08996 * 109.50273 * 305.42873 * 9 7 2 11 11 C 1.53115 * 109.50482 * 65.54828 * 9 7 2 12 12 C 1.53126 * 109.16077 * 177.59274 * 11 9 7 13 13 C 1.53031 * 109.27828 * 302.34522 * 12 11 9 14 14 N 1.46850 * 109.52355 * 59.18476 * 13 12 11 15 15 C 1.46895 * 110.99906 * 174.15930 * 14 13 12 16 16 C 1.52996 * 109.47237 * 294.20116 * 15 14 13 17 17 C 1.53001 * 109.47347 * 295.00718 * 16 15 14 18 18 C 1.53003 * 109.46907 * 179.97438 * 17 16 15 19 19 C 1.52996 * 109.47429 * 59.99861 * 18 17 16 20 20 O 1.42895 * 109.47198 * 179.97438 * 19 18 17 21 21 C 1.52999 * 109.46862 * 299.99796 * 19 18 17 22 22 C 1.52996 * 109.47459 * 60.00179 * 21 19 18 23 23 C 1.46856 * 111.19072 * 298.25182 * 14 13 12 24 24 H 0.96997 * 120.00093 * 359.97438 * 1 2 3 25 25 H 1.08993 * 109.52320 * 297.49888 * 11 9 7 26 26 H 1.09003 * 109.52221 * 57.69449 * 11 9 7 27 27 H 1.09003 * 109.50014 * 182.40462 * 12 11 9 28 28 H 1.09003 * 109.49831 * 62.28982 * 12 11 9 29 29 H 1.08997 * 109.46413 * 299.16276 * 13 12 11 30 30 H 1.09001 * 109.45995 * 179.19416 * 13 12 11 31 31 H 1.08993 * 109.47529 * 54.20506 * 15 14 13 32 32 H 1.09005 * 109.47224 * 174.20307 * 15 14 13 33 33 H 1.09004 * 109.47126 * 55.00236 * 16 15 14 34 34 H 1.08999 * 109.46761 * 299.99363 * 17 16 15 35 35 H 1.08994 * 109.47083 * 59.99691 * 17 16 15 36 36 H 1.08999 * 109.46978 * 299.99338 * 18 17 16 37 37 H 1.09008 * 109.46754 * 180.02562 * 18 17 16 38 38 H 1.08999 * 109.47467 * 59.99777 * 19 18 17 39 39 H 0.96703 * 114.00113 * 299.99764 * 20 19 18 40 40 H 1.09004 * 109.46917 * 299.99760 * 21 19 18 41 41 H 1.09009 * 109.47085 * 180.02562 * 21 19 18 42 42 H 1.08996 * 109.47365 * 179.97438 * 22 21 19 43 43 H 1.09009 * 109.47165 * 59.99484 * 22 21 19 44 44 H 1.08994 * 109.46080 * 301.72643 * 23 14 13 45 45 H 1.09001 * 109.45468 * 181.75861 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6024 1.9854 -1.3947 5 1 3.4899 1.4728 0.8031 6 1 1.3978 2.6809 0.5917 7 6 2.0045 -1.1940 -0.0005 8 1 3.0812 -1.1961 0.0834 9 6 1.2555 -2.4965 -0.1182 10 1 0.4948 -2.5504 0.6606 11 6 0.5872 -2.5794 -1.4933 12 6 -0.1210 -3.9305 -1.6272 13 6 0.8959 -5.0561 -1.4253 14 7 1.5065 -4.9331 -0.0955 15 6 2.3858 -6.0752 0.1877 16 6 1.5486 -7.3523 0.2825 17 6 0.6080 -7.2574 1.4855 18 6 -0.2297 -8.5343 1.5798 19 6 0.6962 -9.7403 1.7501 20 8 -0.0862 -10.9328 1.8388 21 6 1.6367 -9.8351 0.5471 22 6 2.4745 -8.5584 0.4527 23 6 2.2324 -3.6637 0.0400 24 1 -0.4850 0.8400 0.0004 25 1 -0.1413 -1.7749 -1.5934 26 1 1.3439 -2.4861 -2.2723 27 1 -0.5627 -4.0129 -2.6203 28 1 -0.9038 -4.0074 -0.8726 29 1 1.6708 -4.9868 -2.1887 30 1 0.3921 -6.0194 -1.5059 31 1 3.1167 -6.1787 -0.6142 32 1 2.9039 -5.9095 1.1323 33 1 0.9621 -7.4707 -0.6287 34 1 1.1944 -7.1391 2.3966 35 1 -0.0519 -6.3985 1.3639 36 1 -0.8161 -8.6522 0.6686 37 1 -0.9001 -8.4665 2.4366 38 1 1.2826 -9.6224 2.6613 39 1 -0.7063 -10.9421 2.5808 40 1 1.0502 -9.9531 -0.3641 41 1 2.2961 -10.6947 0.6682 42 1 3.1448 -8.6261 -0.4041 43 1 3.0609 -8.4404 1.3640 44 1 3.0011 -3.6010 -0.7302 45 1 2.6994 -3.6158 1.0237 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397771649.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:00 Heat of formation + Delta-G solvation = -84.151647 kcal Electronic energy + Delta-G solvation = -21364.897138 eV Core-core repulsion = 18380.377463 eV Total energy + Delta-G solvation = -2984.519674 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.43667 -37.98930 -35.89650 -33.57046 -31.89697 -30.82203 -30.06311 -29.39345 -25.11511 -24.91787 -22.79099 -22.24802 -21.64666 -20.51658 -19.57065 -18.57516 -17.35225 -16.35627 -15.67869 -15.12771 -14.66945 -14.59591 -14.36023 -13.97364 -13.63046 -13.29850 -12.97112 -12.82402 -12.53427 -12.31960 -12.17994 -12.02919 -11.94308 -11.44124 -11.14653 -11.05473 -10.93834 -10.76005 -10.73224 -10.48701 -10.41717 -10.18179 -9.99975 -9.86612 -9.77069 -9.43172 -8.94599 -8.70894 -8.29459 -7.60522 -5.97884 -4.01240 3.31985 3.38468 3.40916 4.02923 4.36877 4.51835 4.64831 4.76956 4.91301 5.11951 5.21952 5.30385 5.34135 5.41287 5.45434 5.51509 5.66941 5.72215 5.80758 5.87577 5.94665 5.96809 6.04588 6.09511 6.10153 6.12147 6.25181 6.30593 6.43116 6.52769 6.53990 6.58933 6.71656 6.74925 6.97600 7.21889 7.37468 7.48432 7.69936 7.77257 7.85668 8.05410 8.14627 8.50009 9.03602 9.62389 11.10697 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.038448 B = 0.003767 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.088342 B = 7431.653744 C = 7497.501979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.064 3.936 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.275 1.275 6 H -0.287 1.287 7 C -0.516 4.516 8 H 0.052 0.948 9 C 0.054 3.946 10 H 0.040 0.960 11 C -0.106 4.106 12 C -0.117 4.117 13 C 0.061 3.939 14 N -0.535 5.535 15 C 0.059 3.941 16 C -0.085 4.085 17 C -0.103 4.103 18 C -0.151 4.151 19 C 0.103 3.897 20 O -0.573 6.573 21 C -0.109 4.109 22 C -0.112 4.112 23 C 0.068 3.932 24 H 0.259 0.741 25 H 0.075 0.925 26 H 0.030 0.970 27 H 0.045 0.955 28 H 0.061 0.939 29 H 0.020 0.980 30 H 0.060 0.940 31 H 0.024 0.976 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.058 0.942 35 H 0.083 0.917 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.052 0.948 39 H 0.376 0.624 40 H 0.067 0.933 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.016 0.984 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.096 -17.335 1.674 17.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.137 4.137 3 Si 0.716 3.284 4 H -0.207 1.207 5 H -0.200 1.200 6 H -0.213 1.213 7 C -0.555 4.555 8 H 0.071 0.929 9 C 0.036 3.964 10 H 0.058 0.942 11 C -0.144 4.144 12 C -0.155 4.155 13 C -0.067 4.067 14 N -0.259 5.259 15 C -0.069 4.069 16 C -0.104 4.104 17 C -0.140 4.140 18 C -0.189 4.189 19 C 0.045 3.955 20 O -0.379 6.379 21 C -0.146 4.146 22 C -0.150 4.150 23 C -0.059 4.059 24 H 0.069 0.931 25 H 0.094 0.906 26 H 0.049 0.951 27 H 0.063 0.937 28 H 0.080 0.920 29 H 0.039 0.961 30 H 0.078 0.922 31 H 0.043 0.957 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.102 0.898 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.222 0.778 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.034 0.966 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.922 -17.353 1.491 17.441 hybrid contribution 0.825 1.161 -0.164 1.434 sum 1.748 -16.191 1.328 16.339 Atomic orbital electron populations 1.69947 1.05839 1.26398 1.50418 1.24929 0.94783 0.98895 0.95123 0.86684 0.79869 0.83702 0.78163 1.20716 1.20033 1.21314 1.21127 0.93124 0.90846 1.50383 0.92944 1.18660 0.93733 0.90288 0.93761 0.94214 1.21593 0.99183 0.94459 0.99147 1.21659 0.97881 0.96400 0.99534 1.22055 0.96907 0.98630 0.89061 1.61982 1.33462 1.02180 1.28325 1.22096 0.93901 0.90727 1.00189 1.21225 0.96489 0.93396 0.99275 1.21412 0.98127 0.96971 0.97532 1.22289 0.98600 0.95647 1.02339 1.21879 0.91686 0.83817 0.98126 1.86487 1.56610 1.40384 1.54431 1.21442 0.97486 0.97990 0.97724 1.21540 0.97711 0.93620 1.02124 1.22300 0.95972 0.88624 0.98961 0.93075 0.90609 0.95084 0.93673 0.92045 0.96136 0.92185 0.95734 0.91269 0.91039 0.92348 0.89825 0.91401 0.92060 0.92951 0.77752 0.91401 0.91681 0.91580 0.91793 0.96561 0.92316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.51 11.98 55.43 0.66 -24.84 16 2 C 0.06 1.78 5.28 -17.82 -0.09 1.69 16 3 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.52 -14.16 8.49 -34.44 -0.29 -14.46 16 8 H 0.05 1.42 7.75 -52.49 -0.41 1.02 16 9 C 0.05 1.36 2.13 -91.69 -0.20 1.16 16 10 H 0.04 1.11 8.12 -51.93 -0.42 0.69 16 11 C -0.11 -2.48 5.09 -26.61 -0.14 -2.61 16 12 C -0.12 -2.26 6.09 -26.65 -0.16 -2.42 16 13 C 0.06 1.06 5.30 -3.84 -0.02 1.04 16 14 N -0.54 -9.57 4.11 -234.67 -0.96 -10.53 16 15 C 0.06 0.86 4.35 -3.83 -0.02 0.85 16 16 C -0.09 -1.04 2.11 -90.62 -0.19 -1.23 16 17 C -0.10 -1.25 5.09 -26.73 -0.14 -1.39 16 18 C -0.15 -1.58 5.54 -26.73 -0.15 -1.73 16 19 C 0.10 1.04 3.47 -26.73 -0.09 0.95 16 20 O -0.57 -5.88 13.32 -35.23 -0.47 -6.35 16 21 C -0.11 -1.11 5.57 -26.73 -0.15 -1.26 16 22 C -0.11 -1.15 5.21 -26.73 -0.14 -1.29 16 23 C 0.07 1.44 4.68 -3.83 -0.02 1.42 16 24 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 25 H 0.08 1.98 6.80 -51.93 -0.35 1.63 16 26 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.92 6.12 -51.93 -0.32 0.60 16 31 H 0.02 0.36 8.12 -51.93 -0.42 -0.07 16 32 H 0.07 1.00 7.99 -51.93 -0.41 0.58 16 33 H 0.07 0.92 6.22 -51.93 -0.32 0.60 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 1.21 7.75 -51.93 -0.40 0.81 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 38 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.38 2.33 9.08 45.56 0.41 2.74 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 44 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.06 1.23 8.02 -51.93 -0.42 0.82 16 LS Contribution 338.82 15.07 5.11 5.11 Total: -1.00 -28.97 338.82 -10.17 -39.14 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -7.70 Total: 0.48 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: -1.79 Total: -19.27 kcal Atomic # 7 Polarization: -35.08 SS G_CDS: -0.30 Total: -35.38 kcal Atomic # 8 Polarization: -5.88 SS G_CDS: -0.47 Total: -6.35 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.97 -10.17 -39.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397771649.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.010 kcal (2) G-P(sol) polarization free energy of solvation -28.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds