Wall clock time and date at job start Mon Mar 30 2020 07:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00055 * 2 1 4 4 H 1.48498 * 109.47325 * 264.99719 * 3 2 1 5 5 H 1.48505 * 109.46745 * 145.00001 * 3 2 1 6 6 H 1.48501 * 109.47161 * 25.00036 * 3 2 1 7 7 C 1.37873 * 119.99746 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00233 * 185.14591 * 7 2 1 9 9 C 1.50701 * 120.00106 * 5.14716 * 7 2 1 10 10 H 1.08996 * 109.50273 * 305.42873 * 9 7 2 11 11 C 1.53115 * 109.50482 * 65.54828 * 9 7 2 12 12 C 1.53126 * 109.16077 * 177.59274 * 11 9 7 13 13 C 1.53031 * 109.27828 * 302.34522 * 12 11 9 14 14 N 1.46850 * 109.52355 * 59.18476 * 13 12 11 15 15 C 1.46895 * 110.99906 * 174.15930 * 14 13 12 16 16 C 1.52996 * 109.47237 * 294.20116 * 15 14 13 17 17 C 1.53001 * 109.47347 * 295.00718 * 16 15 14 18 18 C 1.53003 * 109.46907 * 179.97438 * 17 16 15 19 19 C 1.52996 * 109.47429 * 59.99861 * 18 17 16 20 20 O 1.42895 * 109.47198 * 179.97438 * 19 18 17 21 21 C 1.52999 * 109.46862 * 299.99796 * 19 18 17 22 22 C 1.52996 * 109.47459 * 60.00179 * 21 19 18 23 23 C 1.46856 * 111.19072 * 298.25182 * 14 13 12 24 24 H 0.96997 * 120.00093 * 359.97438 * 1 2 3 25 25 H 1.08993 * 109.52320 * 297.49888 * 11 9 7 26 26 H 1.09003 * 109.52221 * 57.69449 * 11 9 7 27 27 H 1.09003 * 109.50014 * 182.40462 * 12 11 9 28 28 H 1.09003 * 109.49831 * 62.28982 * 12 11 9 29 29 H 1.08997 * 109.46413 * 299.16276 * 13 12 11 30 30 H 1.09001 * 109.45995 * 179.19416 * 13 12 11 31 31 H 1.08993 * 109.47529 * 54.20506 * 15 14 13 32 32 H 1.09005 * 109.47224 * 174.20307 * 15 14 13 33 33 H 1.09004 * 109.47126 * 55.00236 * 16 15 14 34 34 H 1.08999 * 109.46761 * 299.99363 * 17 16 15 35 35 H 1.08994 * 109.47083 * 59.99691 * 17 16 15 36 36 H 1.08999 * 109.46978 * 299.99338 * 18 17 16 37 37 H 1.09008 * 109.46754 * 180.02562 * 18 17 16 38 38 H 1.08999 * 109.47467 * 59.99777 * 19 18 17 39 39 H 0.96703 * 114.00113 * 299.99764 * 20 19 18 40 40 H 1.09004 * 109.46917 * 299.99760 * 21 19 18 41 41 H 1.09009 * 109.47085 * 180.02562 * 21 19 18 42 42 H 1.08996 * 109.47365 * 179.97438 * 22 21 19 43 43 H 1.09009 * 109.47165 * 59.99484 * 22 21 19 44 44 H 1.08994 * 109.46080 * 301.72643 * 23 14 13 45 45 H 1.09001 * 109.45468 * 181.75861 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6024 1.9854 -1.3947 5 1 3.4899 1.4728 0.8031 6 1 1.3978 2.6809 0.5917 7 6 2.0045 -1.1940 -0.0005 8 1 3.0812 -1.1961 0.0834 9 6 1.2555 -2.4965 -0.1182 10 1 0.4948 -2.5504 0.6606 11 6 0.5872 -2.5794 -1.4933 12 6 -0.1210 -3.9305 -1.6272 13 6 0.8959 -5.0561 -1.4253 14 7 1.5065 -4.9331 -0.0955 15 6 2.3858 -6.0752 0.1877 16 6 1.5486 -7.3523 0.2825 17 6 0.6080 -7.2574 1.4855 18 6 -0.2297 -8.5343 1.5798 19 6 0.6962 -9.7403 1.7501 20 8 -0.0862 -10.9328 1.8388 21 6 1.6367 -9.8351 0.5471 22 6 2.4745 -8.5584 0.4527 23 6 2.2324 -3.6637 0.0400 24 1 -0.4850 0.8400 0.0004 25 1 -0.1413 -1.7749 -1.5934 26 1 1.3439 -2.4861 -2.2723 27 1 -0.5627 -4.0129 -2.6203 28 1 -0.9038 -4.0074 -0.8726 29 1 1.6708 -4.9868 -2.1887 30 1 0.3921 -6.0194 -1.5059 31 1 3.1167 -6.1787 -0.6142 32 1 2.9039 -5.9095 1.1323 33 1 0.9621 -7.4707 -0.6287 34 1 1.1944 -7.1391 2.3966 35 1 -0.0519 -6.3985 1.3639 36 1 -0.8161 -8.6522 0.6686 37 1 -0.9001 -8.4665 2.4366 38 1 1.2826 -9.6224 2.6613 39 1 -0.7063 -10.9421 2.5808 40 1 1.0502 -9.9531 -0.3641 41 1 2.2961 -10.6947 0.6682 42 1 3.1448 -8.6261 -0.4041 43 1 3.0609 -8.4404 1.3640 44 1 3.0011 -3.6010 -0.7302 45 1 2.6994 -3.6158 1.0237 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397771649.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:00 Heat of formation + Delta-G solvation = -102.355184 kcal Electronic energy + Delta-G solvation = -21365.686502 eV Core-core repulsion = 18380.377463 eV Total energy + Delta-G solvation = -2985.309039 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.51006 -39.30505 -36.92273 -35.27903 -33.55544 -31.75038 -31.65831 -30.68541 -26.90545 -26.35635 -23.79551 -23.48844 -23.30990 -21.60436 -20.59259 -20.29996 -18.40847 -18.10667 -16.82996 -16.65652 -16.20112 -15.71232 -15.45079 -15.31568 -14.97756 -14.58675 -14.40672 -14.35429 -14.01831 -13.59160 -13.41960 -13.16059 -13.02574 -12.82581 -12.75112 -12.64084 -12.54344 -12.07720 -11.95286 -11.90860 -11.71729 -11.62213 -11.32399 -11.29325 -10.98698 -10.75900 -10.66438 -10.56302 -10.39182 -9.05633 -8.10591 -6.21443 1.41047 1.41513 1.51120 2.42914 3.10947 3.19322 3.32403 3.80408 3.85456 3.94972 4.19233 4.21827 4.29662 4.31814 4.41156 4.48993 4.55437 4.57857 4.60970 4.61611 4.70737 4.80995 4.85875 4.92218 4.96131 5.01294 5.10767 5.14675 5.16553 5.19259 5.23710 5.27408 5.36045 5.40390 5.47779 5.57116 5.61609 5.63804 5.97215 6.08104 6.20095 6.42442 6.48537 6.91897 6.92272 7.45910 8.97254 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.038448 B = 0.003767 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.088342 B = 7431.653744 C = 7497.501979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.015 3.985 3 Si 0.952 3.048 4 H -0.275 1.275 5 H -0.268 1.268 6 H -0.284 1.284 7 C -0.537 4.537 8 H 0.051 0.949 9 C 0.053 3.947 10 H 0.000 1.000 11 C -0.098 4.098 12 C -0.110 4.110 13 C 0.066 3.934 14 N -0.542 5.542 15 C 0.060 3.940 16 C -0.078 4.078 17 C -0.100 4.100 18 C -0.144 4.144 19 C 0.106 3.894 20 O -0.588 6.588 21 C -0.108 4.108 22 C -0.104 4.104 23 C 0.082 3.918 24 H 0.260 0.740 25 H 0.041 0.959 26 H 0.026 0.974 27 H 0.068 0.932 28 H 0.050 0.950 29 H 0.023 0.977 30 H 0.088 0.912 31 H 0.031 0.969 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.070 0.930 38 H 0.061 0.939 39 H 0.392 0.608 40 H 0.061 0.939 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.071 0.929 44 H 0.013 0.987 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.028 -18.903 1.550 19.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.184 4.184 3 Si 0.778 3.222 4 H -0.201 1.201 5 H -0.192 1.192 6 H -0.210 1.210 7 C -0.575 4.575 8 H 0.069 0.931 9 C 0.034 3.966 10 H 0.019 0.981 11 C -0.137 4.137 12 C -0.148 4.148 13 C -0.061 4.061 14 N -0.267 5.267 15 C -0.067 4.067 16 C -0.096 4.096 17 C -0.138 4.138 18 C -0.182 4.182 19 C 0.047 3.953 20 O -0.396 6.396 21 C -0.146 4.146 22 C -0.142 4.142 23 C -0.045 4.045 24 H 0.069 0.931 25 H 0.060 0.940 26 H 0.045 0.955 27 H 0.087 0.913 28 H 0.068 0.932 29 H 0.042 0.958 30 H 0.106 0.894 31 H 0.049 0.951 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.242 0.758 40 H 0.079 0.921 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.089 0.911 44 H 0.031 0.969 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.853 -18.941 1.377 19.082 hybrid contribution 0.497 1.629 -0.092 1.706 sum 2.350 -17.312 1.285 17.518 Atomic orbital electron populations 1.70081 1.07254 1.27158 1.51144 1.25713 0.95592 1.02313 0.94782 0.85667 0.78735 0.79474 0.78367 1.20102 1.19247 1.20967 1.21516 0.93285 0.92369 1.50373 0.93114 1.18573 0.93456 0.91308 0.93270 0.98143 1.21408 0.98322 0.95914 0.98031 1.21573 0.97870 0.94774 1.00564 1.22038 0.96474 0.98893 0.88727 1.61913 1.33969 1.01886 1.28913 1.22181 0.93914 0.90248 1.00402 1.21159 0.96450 0.92975 0.99041 1.21340 0.97900 0.96850 0.97677 1.22215 0.98521 0.95036 1.02412 1.21843 0.91555 0.83438 0.98443 1.86451 1.57193 1.40281 1.55655 1.21434 0.97547 0.98078 0.97525 1.21471 0.97348 0.92497 1.02920 1.21959 0.94845 0.89111 0.98607 0.93097 0.94032 0.95541 0.91331 0.93153 0.95833 0.89394 0.95067 0.91129 0.91391 0.92163 0.92473 0.92202 0.91084 0.92110 0.75822 0.92064 0.90977 0.90721 0.91052 0.96893 0.92679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.23 11.98 21.45 0.26 -53.97 16 2 C 0.01 0.84 5.28 84.65 0.45 1.29 16 3 Si 0.95 44.11 29.54 68.60 2.03 46.14 16 4 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 5 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 6 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 7 C -0.54 -30.13 8.49 25.60 0.22 -29.91 16 8 H 0.05 2.79 7.75 -2.91 -0.02 2.77 16 9 C 0.05 2.71 2.13 -11.49 -0.02 2.69 16 10 H 0.00 0.02 8.12 -2.39 -0.02 0.00 16 11 C -0.10 -4.73 5.09 30.68 0.16 -4.57 16 12 C -0.11 -4.21 6.09 30.65 0.19 -4.03 16 13 C 0.07 2.19 5.30 86.32 0.46 2.65 16 14 N -0.54 -19.00 4.11 -896.38 -3.68 -22.69 16 15 C 0.06 1.65 4.35 86.30 0.38 2.02 16 16 C -0.08 -1.72 2.11 -10.79 -0.02 -1.75 16 17 C -0.10 -2.29 5.09 30.60 0.16 -2.14 16 18 C -0.14 -2.76 5.54 30.59 0.17 -2.59 16 19 C 0.11 1.87 3.47 30.59 0.11 1.98 16 20 O -0.59 -10.65 13.32 -148.98 -1.98 -12.64 16 21 C -0.11 -1.93 5.57 30.59 0.17 -1.76 16 22 C -0.10 -1.85 5.21 30.59 0.16 -1.69 16 23 C 0.08 3.50 4.68 86.32 0.40 3.91 16 24 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 25 H 0.04 2.25 6.80 -2.39 -0.02 2.23 16 26 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.09 2.47 6.12 -2.39 -0.01 2.45 16 31 H 0.03 0.83 8.12 -2.39 -0.02 0.81 16 32 H 0.07 1.92 7.99 -2.38 -0.02 1.90 16 33 H 0.07 1.58 6.22 -2.39 -0.01 1.56 16 34 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.06 1.62 7.75 -2.39 -0.02 1.61 16 36 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 38 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.39 3.94 9.08 -74.06 -0.67 3.26 16 40 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 42 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 44 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 45 H 0.05 2.34 8.02 -2.39 -0.02 2.32 16 Total: -1.00 -63.13 338.82 -0.17 -63.30 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: 0.26 Total: 13.77 kcal Atomic # 6 Polarization: -36.86 SS G_CDS: 2.96 Total: -33.90 kcal Atomic # 7 Polarization: -73.23 SS G_CDS: -3.43 Total: -76.66 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: -1.98 Total: -12.64 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -63.13 -0.17 -63.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397771649.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.057 kcal (2) G-P(sol) polarization free energy of solvation -63.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds