Wall clock time and date at job start Mon Mar 30 2020 06:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00016 * 2 1 4 4 H 1.48503 * 109.46962 * 239.99655 * 3 2 1 5 5 H 1.48502 * 109.47167 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47450 * 119.99674 * 3 2 1 7 7 C 1.37875 * 120.00043 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00102 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00251 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.49777 * 59.92133 * 9 7 2 11 11 C 1.53120 * 109.53240 * 299.82337 * 9 7 2 12 12 C 1.53116 * 109.15532 * 182.38267 * 11 9 7 13 13 C 1.53037 * 109.28142 * 57.65666 * 12 11 9 14 14 N 1.46846 * 109.51989 * 300.81807 * 13 12 11 15 15 C 1.46907 * 111.00114 * 185.84101 * 14 13 12 16 16 C 1.52998 * 109.47115 * 52.00889 * 15 14 13 17 17 H 1.08997 * 109.47238 * 301.96560 * 16 15 14 18 18 C 1.52998 * 109.47423 * 181.95781 * 16 15 14 19 19 C 1.52995 * 109.47535 * 180.02562 * 18 16 15 20 20 C 1.53003 * 109.47081 * 59.99809 * 19 18 16 21 21 C 1.52999 * 109.47396 * 300.00234 * 20 19 18 22 22 H 1.09002 * 109.47032 * 179.97438 * 21 20 19 23 23 O 1.42895 * 109.47126 * 299.99863 * 21 20 19 24 24 C 1.53006 * 109.46937 * 60.00029 * 21 20 19 25 25 C 1.46848 * 111.20046 * 61.74153 * 14 13 12 26 26 H 0.96995 * 119.99969 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.52311 * 302.28640 * 11 9 7 28 28 H 1.09004 * 109.52404 * 62.41500 * 11 9 7 29 29 H 1.09007 * 109.50197 * 177.59401 * 12 11 9 30 30 H 1.08997 * 109.50327 * 297.70802 * 12 11 9 31 31 H 1.09002 * 109.46344 * 180.80208 * 13 12 11 32 32 H 1.08997 * 109.46420 * 60.82947 * 13 12 11 33 33 H 1.09002 * 109.46595 * 292.01441 * 15 14 13 34 34 H 1.09000 * 109.47324 * 172.01506 * 15 14 13 35 35 H 1.09005 * 109.46948 * 300.00573 * 18 16 15 36 36 H 1.08997 * 109.46918 * 60.00159 * 18 16 15 37 37 H 1.08997 * 109.46890 * 300.00634 * 19 18 16 38 38 H 1.08997 * 109.47130 * 180.02562 * 19 18 16 39 39 H 1.08999 * 109.47249 * 180.02562 * 20 19 18 40 40 H 1.09005 * 109.46897 * 60.00094 * 20 19 18 41 41 H 0.96693 * 113.99847 * 300.00073 * 23 21 20 42 42 H 1.08996 * 109.47473 * 59.99967 * 24 21 20 43 43 H 1.08997 * 109.46870 * 180.02562 * 24 21 20 44 44 H 1.09002 * 109.46326 * 58.27230 * 25 14 13 45 45 H 1.08994 * 109.46175 * 178.25216 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 1 0.6236 -2.5570 -0.8888 11 6 0.3731 -2.5835 1.2522 12 6 -0.3425 -3.9370 1.2737 13 6 0.6975 -5.0591 1.2375 14 7 1.5113 -4.9348 0.0214 15 6 2.4285 -6.0739 -0.1170 16 6 1.6411 -7.3802 0.0029 17 1 1.1254 -7.4069 0.9627 18 6 2.6030 -8.5662 -0.0925 19 6 1.8155 -9.8725 0.0267 20 6 0.7902 -9.9551 -1.1060 21 6 -0.1717 -8.7692 -1.0107 22 1 -0.9019 -8.8278 -1.8179 23 8 -0.8482 -8.8045 0.2475 24 6 0.6158 -7.4628 -1.1299 25 6 2.2450 -3.6629 0.0011 26 1 -0.4850 0.8400 -0.0004 27 1 0.9961 -2.4866 2.1413 28 1 -0.3642 -1.7808 1.2347 29 1 -0.9361 -4.0203 2.1842 30 1 -0.9952 -4.0174 0.4045 31 1 0.1908 -6.0242 1.2383 32 1 1.3412 -4.9862 2.1141 33 1 3.1825 -6.0308 0.6690 34 1 2.9161 -6.0316 -1.0909 35 1 3.1187 -8.5395 -1.0524 36 1 3.3336 -8.5071 0.7142 37 1 1.2995 -9.8994 0.9864 38 1 2.5009 -10.7174 -0.0407 39 1 0.2289 -10.8855 -1.0208 40 1 1.3062 -9.9282 -2.0658 41 1 -1.3687 -9.6064 0.3918 42 1 1.1318 -7.4359 -2.0896 43 1 -0.0694 -6.6180 -1.0616 44 1 2.8813 -3.5965 0.8836 45 1 2.8619 -3.6139 -0.8960 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397773247.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:22 Heat of formation + Delta-G solvation = -77.667831 kcal Electronic energy + Delta-G solvation = -21710.718505 eV Core-core repulsion = 18726.479990 eV Total energy + Delta-G solvation = -2984.238515 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.55619 -37.86440 -35.39167 -33.65633 -31.98800 -30.46996 -29.81259 -29.52658 -25.44776 -24.88930 -22.61539 -22.21704 -21.55496 -20.41064 -19.41835 -18.45675 -16.80773 -16.30644 -15.71325 -15.17157 -14.85997 -14.53137 -14.41692 -13.88718 -13.39377 -13.07640 -12.95595 -12.74607 -12.43917 -12.39278 -12.14984 -11.82508 -11.57223 -11.45909 -11.29316 -10.90822 -10.88176 -10.77863 -10.65009 -10.63499 -10.25613 -9.99370 -9.86797 -9.71171 -9.63308 -9.36099 -8.89014 -8.62039 -8.23197 -7.50345 -5.91329 -3.97415 3.35773 3.40278 3.42794 4.26736 4.43735 4.58754 4.67307 4.79559 4.83068 5.16483 5.28612 5.35324 5.38459 5.45446 5.50075 5.58822 5.75350 5.80497 5.85389 5.91341 5.99655 6.03897 6.04272 6.16150 6.21450 6.24439 6.31197 6.40693 6.51940 6.61055 6.63101 6.68573 6.85870 6.86522 7.07759 7.32423 7.50449 7.65315 7.79785 7.83277 7.96200 8.17050 8.25548 8.55809 9.06634 9.66406 11.14551 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.038960 B = 0.004165 C = 0.003975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.508268 B = 6721.685107 C = 7042.276340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.890 3.110 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.279 1.279 7 C -0.515 4.515 8 H 0.052 0.948 9 C 0.056 3.944 10 H 0.033 0.967 11 C -0.110 4.110 12 C -0.116 4.116 13 C 0.057 3.943 14 N -0.534 5.534 15 C 0.058 3.942 16 C -0.083 4.083 17 H 0.081 0.919 18 C -0.114 4.114 19 C -0.112 4.112 20 C -0.151 4.151 21 C 0.103 3.897 22 H 0.050 0.950 23 O -0.559 6.559 24 C -0.099 4.099 25 C 0.068 3.932 26 H 0.259 0.741 27 H 0.028 0.972 28 H 0.089 0.911 29 H 0.043 0.957 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.017 0.983 33 H 0.023 0.977 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.066 0.934 38 H 0.055 0.945 39 H 0.058 0.942 40 H 0.069 0.931 41 H 0.369 0.631 42 H 0.070 0.930 43 H 0.085 0.915 44 H 0.016 0.984 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.665 -19.505 -0.609 19.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.553 4.553 8 H 0.070 0.930 9 C 0.037 3.963 10 H 0.051 0.949 11 C -0.148 4.148 12 C -0.154 4.154 13 C -0.071 4.071 14 N -0.259 5.259 15 C -0.070 4.070 16 C -0.102 4.102 17 H 0.100 0.900 18 C -0.152 4.152 19 C -0.150 4.150 20 C -0.189 4.189 21 C 0.044 3.956 22 H 0.068 0.932 23 O -0.364 6.364 24 C -0.136 4.136 25 C -0.059 4.059 26 H 0.069 0.931 27 H 0.046 0.954 28 H 0.107 0.893 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.035 0.965 33 H 0.041 0.959 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.215 0.785 42 H 0.088 0.912 43 H 0.104 0.896 44 H 0.034 0.966 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.494 -18.780 -0.952 18.811 hybrid contribution 0.879 0.340 0.603 1.119 sum 1.373 -18.440 -0.349 18.495 Atomic orbital electron populations 1.69889 1.05812 1.26326 1.50706 1.24928 0.94812 0.98862 0.95206 0.86705 0.79619 0.83400 0.78507 1.20347 1.21340 1.20428 1.21135 0.92753 0.90795 1.50658 0.92998 1.18643 0.92614 0.90235 0.94807 0.94850 1.21643 0.99957 0.94827 0.98389 1.21653 0.97242 0.96472 0.99990 1.22137 0.95642 0.99247 0.90024 1.62027 1.24012 1.02056 1.37787 1.22136 0.93991 0.90611 1.00259 1.21180 0.95638 0.93098 1.00238 0.90044 1.21568 0.97733 0.94382 1.01555 1.21399 0.97336 0.97239 0.98999 1.22254 0.98500 0.98324 0.99816 1.21873 0.92598 0.95718 0.85414 0.93225 1.86595 1.67154 1.44955 1.37685 1.21494 0.97765 0.96020 0.98338 1.22288 0.96372 0.88774 0.98496 0.93070 0.95352 0.89278 0.93789 0.92243 0.91181 0.96465 0.95921 0.91480 0.92241 0.92309 0.91534 0.92611 0.92336 0.91254 0.78504 0.91183 0.89622 0.96556 0.92526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.81 11.36 55.43 0.63 -25.18 16 2 C 0.06 1.78 5.31 -17.82 -0.09 1.68 16 3 Si 0.89 21.60 29.54 -169.99 -5.02 16.57 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.51 -14.43 8.56 -34.44 -0.29 -14.72 16 8 H 0.05 1.43 7.74 -52.48 -0.41 1.03 16 9 C 0.06 1.44 2.26 -91.69 -0.21 1.23 16 10 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 11 C -0.11 -2.70 5.03 -26.61 -0.13 -2.84 16 12 C -0.12 -2.39 6.09 -26.65 -0.16 -2.55 16 13 C 0.06 1.07 4.97 -3.83 -0.02 1.05 16 14 N -0.53 -10.17 4.08 -234.67 -0.96 -11.13 16 15 C 0.06 0.91 4.54 -3.82 -0.02 0.90 16 16 C -0.08 -1.10 1.56 -90.62 -0.14 -1.24 16 17 H 0.08 1.21 5.61 -51.93 -0.29 0.92 16 18 C -0.11 -1.25 5.20 -26.73 -0.14 -1.39 16 19 C -0.11 -1.07 5.78 -26.73 -0.15 -1.22 16 20 C -0.15 -1.33 5.64 -26.73 -0.15 -1.48 16 21 C 0.10 1.09 3.77 -26.73 -0.10 0.99 16 22 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 23 O -0.56 -6.28 11.97 -35.23 -0.42 -6.70 16 24 C -0.10 -1.29 4.73 -26.72 -0.13 -1.41 16 25 C 0.07 1.49 4.68 -3.84 -0.02 1.48 16 26 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.09 2.43 6.16 -51.93 -0.32 2.11 16 29 H 0.04 0.83 8.14 -51.92 -0.42 0.40 16 30 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 31 H 0.07 1.22 5.70 -51.93 -0.30 0.92 16 32 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.68 7.68 -51.93 -0.40 0.28 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.37 2.56 9.08 45.56 0.41 2.98 16 42 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.09 1.35 7.54 -51.93 -0.39 0.96 16 44 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 45 H 0.06 1.23 8.12 -51.93 -0.42 0.81 16 LS Contribution 334.48 15.07 5.04 5.04 Total: -1.00 -29.48 334.48 -10.08 -39.56 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -7.59 Total: 1.37 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: -1.76 Total: -19.53 kcal Atomic # 7 Polarization: -35.98 SS G_CDS: -0.33 Total: -36.31 kcal Atomic # 8 Polarization: -6.28 SS G_CDS: -0.42 Total: -6.70 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.48 -10.08 -39.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397773247.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.110 kcal (2) G-P(sol) polarization free energy of solvation -29.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds