Wall clock time and date at job start Mon Mar 30 2020 06:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00016 * 2 1 4 4 H 1.48503 * 109.46962 * 239.99655 * 3 2 1 5 5 H 1.48502 * 109.47167 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47450 * 119.99674 * 3 2 1 7 7 C 1.37875 * 120.00043 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00102 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00251 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.49777 * 59.92133 * 9 7 2 11 11 C 1.53120 * 109.53240 * 299.82337 * 9 7 2 12 12 C 1.53116 * 109.15532 * 182.38267 * 11 9 7 13 13 C 1.53037 * 109.28142 * 57.65666 * 12 11 9 14 14 N 1.46846 * 109.51989 * 300.81807 * 13 12 11 15 15 C 1.46907 * 111.00114 * 185.84101 * 14 13 12 16 16 C 1.52998 * 109.47115 * 52.00889 * 15 14 13 17 17 H 1.08997 * 109.47238 * 301.96560 * 16 15 14 18 18 C 1.52998 * 109.47423 * 181.95781 * 16 15 14 19 19 C 1.52995 * 109.47535 * 180.02562 * 18 16 15 20 20 C 1.53003 * 109.47081 * 59.99809 * 19 18 16 21 21 C 1.52999 * 109.47396 * 300.00234 * 20 19 18 22 22 H 1.09002 * 109.47032 * 179.97438 * 21 20 19 23 23 O 1.42895 * 109.47126 * 299.99863 * 21 20 19 24 24 C 1.53006 * 109.46937 * 60.00029 * 21 20 19 25 25 C 1.46848 * 111.20046 * 61.74153 * 14 13 12 26 26 H 0.96995 * 119.99969 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.52311 * 302.28640 * 11 9 7 28 28 H 1.09004 * 109.52404 * 62.41500 * 11 9 7 29 29 H 1.09007 * 109.50197 * 177.59401 * 12 11 9 30 30 H 1.08997 * 109.50327 * 297.70802 * 12 11 9 31 31 H 1.09002 * 109.46344 * 180.80208 * 13 12 11 32 32 H 1.08997 * 109.46420 * 60.82947 * 13 12 11 33 33 H 1.09002 * 109.46595 * 292.01441 * 15 14 13 34 34 H 1.09000 * 109.47324 * 172.01506 * 15 14 13 35 35 H 1.09005 * 109.46948 * 300.00573 * 18 16 15 36 36 H 1.08997 * 109.46918 * 60.00159 * 18 16 15 37 37 H 1.08997 * 109.46890 * 300.00634 * 19 18 16 38 38 H 1.08997 * 109.47130 * 180.02562 * 19 18 16 39 39 H 1.08999 * 109.47249 * 180.02562 * 20 19 18 40 40 H 1.09005 * 109.46897 * 60.00094 * 20 19 18 41 41 H 0.96693 * 113.99847 * 300.00073 * 23 21 20 42 42 H 1.08996 * 109.47473 * 59.99967 * 24 21 20 43 43 H 1.08997 * 109.46870 * 180.02562 * 24 21 20 44 44 H 1.09002 * 109.46326 * 58.27230 * 25 14 13 45 45 H 1.08994 * 109.46175 * 178.25216 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 1 0.6236 -2.5570 -0.8888 11 6 0.3731 -2.5835 1.2522 12 6 -0.3425 -3.9370 1.2737 13 6 0.6975 -5.0591 1.2375 14 7 1.5113 -4.9348 0.0214 15 6 2.4285 -6.0739 -0.1170 16 6 1.6411 -7.3802 0.0029 17 1 1.1254 -7.4069 0.9627 18 6 2.6030 -8.5662 -0.0925 19 6 1.8155 -9.8725 0.0267 20 6 0.7902 -9.9551 -1.1060 21 6 -0.1717 -8.7692 -1.0107 22 1 -0.9019 -8.8278 -1.8179 23 8 -0.8482 -8.8045 0.2475 24 6 0.6158 -7.4628 -1.1299 25 6 2.2450 -3.6629 0.0011 26 1 -0.4850 0.8400 -0.0004 27 1 0.9961 -2.4866 2.1413 28 1 -0.3642 -1.7808 1.2347 29 1 -0.9361 -4.0203 2.1842 30 1 -0.9952 -4.0174 0.4045 31 1 0.1908 -6.0242 1.2383 32 1 1.3412 -4.9862 2.1141 33 1 3.1825 -6.0308 0.6690 34 1 2.9161 -6.0316 -1.0909 35 1 3.1187 -8.5395 -1.0524 36 1 3.3336 -8.5071 0.7142 37 1 1.2995 -9.8994 0.9864 38 1 2.5009 -10.7174 -0.0407 39 1 0.2289 -10.8855 -1.0208 40 1 1.3062 -9.9282 -2.0658 41 1 -1.3687 -9.6064 0.3918 42 1 1.1318 -7.4359 -2.0896 43 1 -0.0694 -6.6180 -1.0616 44 1 2.8813 -3.5965 0.8836 45 1 2.8619 -3.6139 -0.8960 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397773247.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:21 Heat of formation + Delta-G solvation = -96.327831 kcal Electronic energy + Delta-G solvation = -21711.527663 eV Core-core repulsion = 18726.479990 eV Total energy + Delta-G solvation = -2985.047673 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.66119 -39.29025 -36.53158 -35.26756 -33.65593 -31.95118 -31.19883 -30.69130 -26.93146 -26.75732 -23.88586 -23.47181 -23.11026 -21.55745 -20.58661 -20.18644 -18.40337 -17.61621 -16.85419 -16.68042 -16.25852 -16.00242 -15.43838 -15.28740 -14.94488 -14.68127 -14.43749 -14.22359 -13.74654 -13.59655 -13.46094 -13.05962 -12.89909 -12.82202 -12.77679 -12.58982 -12.47555 -12.31490 -11.90260 -11.72849 -11.69713 -11.61624 -11.42785 -11.22174 -10.93805 -10.68047 -10.65166 -10.44815 -10.35016 -9.07169 -8.07235 -6.21938 1.41351 1.43050 1.50699 2.43157 3.12779 3.19307 3.52235 3.77066 3.89121 3.99883 4.21346 4.23818 4.28489 4.32656 4.40695 4.51369 4.57131 4.59671 4.64734 4.72729 4.78985 4.82637 4.85709 4.91086 4.92340 5.00352 5.10914 5.14879 5.18655 5.20217 5.30663 5.36601 5.40182 5.42343 5.51413 5.58554 5.63042 5.65648 5.97698 6.13167 6.22555 6.41069 6.47603 6.90489 7.04887 7.45820 8.97331 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.038960 B = 0.004165 C = 0.003975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.508268 B = 6721.685107 C = 7042.276340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.014 3.986 3 Si 0.956 3.044 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.539 4.539 8 H 0.051 0.949 9 C 0.054 3.946 10 H -0.004 1.004 11 C -0.102 4.102 12 C -0.109 4.109 13 C 0.067 3.933 14 N -0.541 5.541 15 C 0.058 3.942 16 C -0.073 4.073 17 H 0.067 0.933 18 C -0.112 4.112 19 C -0.110 4.110 20 C -0.145 4.145 21 C 0.104 3.896 22 H 0.057 0.943 23 O -0.580 6.580 24 C -0.100 4.100 25 C 0.081 3.919 26 H 0.260 0.740 27 H 0.020 0.980 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.048 0.952 31 H 0.089 0.911 32 H 0.017 0.983 33 H 0.023 0.977 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.388 0.612 42 H 0.075 0.925 43 H 0.052 0.948 44 H 0.011 0.989 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.476 -21.403 -0.588 21.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.185 4.185 3 Si 0.781 3.219 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.577 4.577 8 H 0.069 0.931 9 C 0.036 3.964 10 H 0.014 0.986 11 C -0.141 4.141 12 C -0.147 4.147 13 C -0.061 4.061 14 N -0.265 5.265 15 C -0.069 4.069 16 C -0.092 4.092 17 H 0.085 0.915 18 C -0.150 4.150 19 C -0.147 4.147 20 C -0.182 4.182 21 C 0.046 3.954 22 H 0.075 0.925 23 O -0.387 6.387 24 C -0.138 4.138 25 C -0.047 4.047 26 H 0.069 0.931 27 H 0.038 0.962 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.107 0.893 32 H 0.035 0.965 33 H 0.042 0.958 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.236 0.764 42 H 0.093 0.907 43 H 0.071 0.929 44 H 0.029 0.971 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.304 -20.709 -0.930 20.770 hybrid contribution 0.592 0.923 0.584 1.243 sum 1.895 -19.785 -0.346 19.879 Atomic orbital electron populations 1.70038 1.07214 1.27143 1.51091 1.25734 0.95669 1.02356 0.94700 0.85658 0.78411 0.79035 0.78808 1.19579 1.20836 1.19724 1.21503 0.92956 0.92227 1.51039 0.93102 1.18563 0.92941 0.91327 0.93619 0.98560 1.21454 0.99058 0.96166 0.97375 1.21565 0.97545 0.94969 1.00572 1.22053 0.95069 0.99138 0.89825 1.61961 1.24602 1.01896 1.38050 1.22248 0.93769 0.90388 1.00537 1.21077 0.95834 0.92734 0.99550 0.91473 1.21550 0.97335 0.93992 1.02080 1.21386 0.97580 0.96781 0.98956 1.22206 0.98023 0.98189 0.99815 1.21820 0.92998 0.95082 0.85533 0.92482 1.86541 1.67702 1.46601 1.37893 1.21463 0.97400 0.96424 0.98492 1.21974 0.95301 0.89198 0.98181 0.93051 0.96153 0.92383 0.91681 0.93290 0.89271 0.96497 0.95836 0.90935 0.91461 0.92158 0.92214 0.90896 0.90248 0.90595 0.76363 0.90663 0.92927 0.97104 0.92555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.61 11.36 21.45 0.24 -54.37 16 2 C 0.01 0.81 5.31 84.65 0.45 1.26 16 3 Si 0.96 44.69 29.54 68.60 2.03 46.72 16 4 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 7 C -0.54 -30.94 8.56 25.60 0.22 -30.72 16 8 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 9 C 0.05 2.90 2.26 -11.49 -0.03 2.87 16 10 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 11 C -0.10 -5.19 5.03 30.67 0.15 -5.03 16 12 C -0.11 -4.53 6.09 30.65 0.19 -4.35 16 13 C 0.07 2.47 4.97 86.33 0.43 2.90 16 14 N -0.54 -20.61 4.08 -896.36 -3.66 -24.27 16 15 C 0.06 1.77 4.54 86.30 0.39 2.16 16 16 C -0.07 -1.84 1.56 -10.79 -0.02 -1.86 16 17 H 0.07 1.90 5.61 -2.39 -0.01 1.89 16 18 C -0.11 -2.16 5.20 30.59 0.16 -2.00 16 19 C -0.11 -1.74 5.78 30.59 0.18 -1.56 16 20 C -0.14 -2.06 5.64 30.60 0.17 -1.89 16 21 C 0.10 2.00 3.77 30.60 0.12 2.11 16 22 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 23 O -0.58 -11.88 11.97 -148.98 -1.78 -13.66 16 24 C -0.10 -2.50 4.73 30.60 0.14 -2.35 16 25 C 0.08 3.64 4.68 86.32 0.40 4.05 16 26 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 27 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.06 3.29 6.16 -2.38 -0.01 3.28 16 29 H 0.06 2.42 8.14 -2.38 -0.02 2.40 16 30 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.09 3.01 5.70 -2.39 -0.01 3.00 16 32 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.07 1.21 8.14 -2.38 -0.02 1.20 16 36 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.06 1.05 7.68 -2.39 -0.02 1.03 16 38 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 41 H 0.39 4.46 9.08 -74.06 -0.67 3.79 16 42 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.05 1.65 7.54 -2.39 -0.02 1.64 16 44 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 45 H 0.06 2.49 8.12 -2.39 -0.02 2.47 16 Total: -1.00 -64.63 334.48 0.05 -64.58 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: 0.27 Total: 15.42 kcal Atomic # 6 Polarization: -37.37 SS G_CDS: 2.96 Total: -34.41 kcal Atomic # 7 Polarization: -75.23 SS G_CDS: -3.42 Total: -78.64 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: -1.78 Total: -13.66 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -64.63 0.05 -64.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397773247.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.749 kcal (2) G-P(sol) polarization free energy of solvation -64.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds