Wall clock time and date at job start Mon Mar 30 2020 06:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99835 * 2 1 4 4 H 1.48494 * 109.46936 * 240.00346 * 3 2 1 5 5 H 1.48501 * 109.47078 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47070 * 120.00040 * 3 2 1 7 7 C 1.37871 * 120.00199 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00356 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99906 * 359.97438 * 7 2 1 10 10 H 1.09010 * 109.50623 * 60.07863 * 9 7 2 11 11 C 1.53116 * 109.50797 * 299.99926 * 9 7 2 12 12 C 1.53116 * 109.16666 * 182.40454 * 11 9 7 13 13 C 1.53036 * 109.27639 * 57.65402 * 12 11 9 14 14 N 1.46846 * 109.52566 * 300.82085 * 13 12 11 15 15 C 1.46897 * 111.00467 * 185.84191 * 14 13 12 16 16 C 1.52999 * 109.47150 * 66.04175 * 15 14 13 17 17 H 1.09000 * 109.47486 * 305.00632 * 16 15 14 18 18 C 1.53006 * 109.46623 * 65.00461 * 16 15 14 19 19 C 1.52999 * 109.46626 * 179.97438 * 18 16 15 20 20 C 1.52997 * 109.47592 * 300.00035 * 19 18 16 21 21 C 1.52996 * 109.47165 * 60.00300 * 20 19 18 22 22 H 1.08992 * 109.47534 * 180.02562 * 21 20 19 23 23 O 1.42898 * 109.47420 * 59.99732 * 21 20 19 24 24 C 1.52997 * 109.47269 * 185.00297 * 16 15 14 25 25 C 1.46850 * 111.19621 * 61.74205 * 14 13 12 26 26 H 0.96999 * 120.00142 * 359.97438 * 1 2 3 27 27 H 1.09006 * 109.51963 * 62.49540 * 11 9 7 28 28 H 1.08995 * 109.52271 * 302.31343 * 11 9 7 29 29 H 1.09002 * 109.50378 * 297.71396 * 12 11 9 30 30 H 1.08996 * 109.53574 * 177.61920 * 12 11 9 31 31 H 1.09003 * 109.46231 * 180.80947 * 13 12 11 32 32 H 1.09000 * 109.46366 * 60.84027 * 13 12 11 33 33 H 1.09000 * 109.46866 * 306.04784 * 15 14 13 34 34 H 1.08994 * 109.47299 * 186.04721 * 15 14 13 35 35 H 1.08993 * 109.46955 * 300.00075 * 18 16 15 36 36 H 1.09000 * 109.47050 * 59.99904 * 18 16 15 37 37 H 1.09000 * 109.47160 * 60.00369 * 19 18 16 38 38 H 1.09002 * 109.46719 * 180.02562 * 19 18 16 39 39 H 1.09000 * 109.47140 * 300.00346 * 20 19 18 40 40 H 1.09001 * 109.47375 * 180.02562 * 20 19 18 41 41 H 0.96705 * 113.99817 * 60.00298 * 23 21 20 42 42 H 1.09000 * 109.47140 * 300.00547 * 24 16 15 43 43 H 1.09001 * 109.47230 * 59.99691 * 24 16 15 44 44 H 1.08996 * 109.46070 * 58.27338 * 25 14 13 45 45 H 1.09001 * 109.46214 * 178.24283 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6249 -2.5579 -0.8909 11 6 0.3710 -2.5814 1.2497 12 6 -0.3447 -3.9348 1.2725 13 6 0.6954 -5.0569 1.2399 14 7 1.5112 -4.9348 0.0250 15 6 2.4287 -6.0741 -0.1099 16 6 1.6223 -7.3538 -0.3401 17 1 0.8948 -7.4742 0.4627 18 6 0.8914 -7.2617 -1.6811 19 6 0.0855 -8.5416 -1.9115 20 6 1.0315 -9.7440 -1.9278 21 6 1.7623 -9.8361 -0.5868 22 1 2.4365 -10.6924 -0.5985 23 8 0.8087 -9.9944 0.4656 24 6 2.5678 -8.5565 -0.3561 25 6 2.2449 -3.6629 0.0037 26 1 -0.4850 0.8400 0.0004 27 1 -0.3670 -1.7794 1.2291 28 1 0.9924 -2.4829 2.1397 29 1 -0.9959 -4.0168 0.4022 30 1 -0.9403 -4.0169 2.1816 31 1 0.1887 -6.0220 1.2415 32 1 1.3376 -4.9826 2.1175 33 1 3.0186 -6.1753 0.8010 34 1 3.0940 -5.9065 -0.9569 35 1 0.2179 -6.4048 -1.6697 36 1 1.6189 -7.1412 -2.4838 37 1 -0.6419 -8.6624 -1.1088 38 1 -0.4348 -8.4762 -2.8671 39 1 1.7589 -9.6232 -2.7305 40 1 0.4573 -10.6558 -2.0924 41 1 0.2610 -10.7873 0.3841 42 1 3.2953 -8.4361 -1.1588 43 1 3.0886 -8.6220 0.5992 44 1 2.8797 -3.5950 0.8872 45 1 2.8636 -3.6154 -0.8924 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397773248.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:25 Heat of formation + Delta-G solvation = -80.166273 kcal Electronic energy + Delta-G solvation = -21583.825425 eV Core-core repulsion = 18599.478570 eV Total energy + Delta-G solvation = -2984.346856 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.49434 -37.93060 -35.40250 -33.59679 -32.03765 -30.58751 -29.89222 -29.41198 -25.42433 -24.89108 -22.53647 -22.22426 -21.57683 -20.43914 -19.47114 -18.48931 -16.86929 -16.33549 -15.71157 -15.23514 -14.71564 -14.47486 -14.34144 -13.81083 -13.70033 -13.21765 -12.87931 -12.70788 -12.49216 -12.34584 -12.11837 -11.81782 -11.72144 -11.40815 -11.29369 -10.89963 -10.87509 -10.68135 -10.67578 -10.61924 -10.23222 -10.03409 -9.86857 -9.74748 -9.67851 -9.38092 -8.90919 -8.64033 -8.24392 -7.52180 -5.92265 -3.98404 3.35235 3.39775 3.42266 4.15349 4.41668 4.55937 4.68003 4.75749 4.90034 5.15513 5.29254 5.37502 5.42843 5.49152 5.53830 5.57129 5.77920 5.78378 5.82895 5.90154 5.99540 6.03055 6.03356 6.19665 6.22694 6.27634 6.37757 6.41028 6.51183 6.60494 6.68182 6.73246 6.82244 6.84332 7.05689 7.30469 7.48694 7.54191 7.78047 7.82010 7.94494 8.15666 8.24313 8.54685 9.05626 9.65520 11.13556 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.038759 B = 0.003992 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.248490 B = 7013.073725 C = 7137.804194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.890 3.110 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.279 1.279 7 C -0.515 4.515 8 H 0.052 0.948 9 C 0.056 3.944 10 H 0.034 0.966 11 C -0.110 4.110 12 C -0.117 4.117 13 C 0.062 3.938 14 N -0.534 5.534 15 C 0.058 3.942 16 C -0.078 4.078 17 H 0.079 0.921 18 C -0.105 4.105 19 C -0.116 4.116 20 C -0.151 4.151 21 C 0.107 3.893 22 H 0.048 0.952 23 O -0.561 6.561 24 C -0.108 4.108 25 C 0.068 3.932 26 H 0.259 0.741 27 H 0.090 0.910 28 H 0.028 0.972 29 H 0.059 0.941 30 H 0.044 0.956 31 H 0.061 0.939 32 H 0.019 0.981 33 H 0.023 0.977 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.053 0.947 37 H 0.065 0.935 38 H 0.056 0.944 39 H 0.069 0.931 40 H 0.058 0.942 41 H 0.372 0.628 42 H 0.073 0.927 43 H 0.064 0.936 44 H 0.016 0.984 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.479 -19.331 -1.621 19.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.554 4.554 8 H 0.070 0.930 9 C 0.037 3.963 10 H 0.052 0.948 11 C -0.148 4.148 12 C -0.154 4.154 13 C -0.066 4.066 14 N -0.258 5.258 15 C -0.070 4.070 16 C -0.096 4.096 17 H 0.098 0.902 18 C -0.142 4.142 19 C -0.153 4.153 20 C -0.189 4.189 21 C 0.048 3.952 22 H 0.066 0.934 23 O -0.366 6.366 24 C -0.146 4.146 25 C -0.059 4.059 26 H 0.069 0.931 27 H 0.108 0.892 28 H 0.047 0.953 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.037 0.963 33 H 0.041 0.959 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.076 0.924 41 H 0.218 0.782 42 H 0.091 0.909 43 H 0.083 0.917 44 H 0.034 0.966 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.290 -18.629 -1.825 18.762 hybrid contribution 0.896 0.353 0.496 1.084 sum 2.186 -18.275 -1.329 18.454 Atomic orbital electron populations 1.69886 1.05815 1.26339 1.50704 1.24926 0.94812 0.98868 0.95190 0.86704 0.79622 0.83391 0.78515 1.20334 1.21336 1.20429 1.21129 0.92765 0.90787 1.50670 0.92985 1.18647 0.92609 0.90251 0.94801 0.94834 1.21645 0.99990 0.94762 0.98428 1.21664 0.97218 0.96527 1.00028 1.22063 0.95672 0.98757 0.90148 1.61961 1.24019 1.02096 1.37771 1.22120 0.94278 0.91031 0.99574 1.21078 0.97245 0.92444 0.98862 0.90245 1.21457 0.99224 0.97360 0.96185 1.21469 0.97993 0.94561 1.01313 1.22248 0.99661 0.98989 0.97984 1.21753 0.89726 0.97351 0.86350 0.93358 1.86573 1.52545 1.48696 1.48804 1.21578 0.97476 0.93470 1.02077 1.22293 0.96375 0.88722 0.98509 0.93061 0.89211 0.95306 0.92198 0.93741 0.92067 0.96255 0.95925 0.91514 0.90214 0.92798 0.91640 0.92516 0.91276 0.92357 0.78208 0.90873 0.91716 0.96562 0.92484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.69 11.35 55.43 0.63 -25.06 16 2 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 3 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.51 -14.36 8.56 -34.44 -0.29 -14.65 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 9 C 0.06 1.42 2.26 -91.69 -0.21 1.22 16 10 H 0.03 0.95 8.14 -51.92 -0.42 0.53 16 11 C -0.11 -2.68 5.02 -26.61 -0.13 -2.82 16 12 C -0.12 -2.37 6.09 -26.65 -0.16 -2.53 16 13 C 0.06 1.14 5.30 -3.83 -0.02 1.12 16 14 N -0.53 -10.09 4.11 -234.67 -0.96 -11.05 16 15 C 0.06 0.92 4.35 -3.83 -0.02 0.90 16 16 C -0.08 -1.04 1.97 -90.62 -0.18 -1.22 16 17 H 0.08 1.21 5.77 -51.93 -0.30 0.91 16 18 C -0.10 -1.38 5.09 -26.73 -0.14 -1.51 16 19 C -0.12 -1.27 5.78 -26.73 -0.15 -1.42 16 20 C -0.15 -1.36 5.64 -26.73 -0.15 -1.51 16 21 C 0.11 1.03 3.77 -26.75 -0.10 0.93 16 22 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 23 O -0.56 -5.84 11.97 -35.23 -0.42 -6.26 16 24 C -0.11 -1.21 4.94 -26.75 -0.13 -1.34 16 25 C 0.07 1.49 4.68 -3.83 -0.02 1.47 16 26 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 27 H 0.09 2.43 6.15 -51.93 -0.32 2.11 16 28 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 1.04 6.13 -51.93 -0.32 0.72 16 32 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.02 0.36 8.12 -51.93 -0.42 -0.06 16 34 H 0.07 1.02 7.98 -51.93 -0.41 0.60 16 35 H 0.08 1.24 7.75 -51.93 -0.40 0.84 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.76 7.68 -51.93 -0.40 0.36 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.37 2.33 9.08 45.56 0.41 2.74 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.06 1.23 8.01 -51.93 -0.42 0.82 16 LS Contribution 335.64 15.07 5.06 5.06 Total: -1.00 -29.35 335.64 -10.14 -39.48 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -7.61 Total: 1.04 kcal Atomic # 6 Polarization: -17.90 SS G_CDS: -1.80 Total: -19.70 kcal Atomic # 7 Polarization: -35.78 SS G_CDS: -0.34 Total: -36.11 kcal Atomic # 8 Polarization: -5.84 SS G_CDS: -0.42 Total: -6.26 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.35 -10.14 -39.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397773248.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.682 kcal (2) G-P(sol) polarization free energy of solvation -29.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds