Wall clock time and date at job start Mon Mar 30 2020 06:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 119.99679 * 2 1 4 4 H 1.48501 * 109.46649 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46658 * 299.99242 * 3 2 1 6 6 H 1.48493 * 109.47219 * 59.99469 * 3 2 1 7 7 C 1.37874 * 119.99941 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99574 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00317 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47222 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.46918 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47080 * 179.97438 * 11 10 9 13 13 N 1.46902 * 109.47368 * 179.97438 * 12 11 10 14 14 C 1.47595 * 110.99751 * 290.12455 * 13 12 11 15 15 C 1.55325 * 106.92358 * 238.74628 * 14 13 12 16 16 H 1.09002 * 112.88036 * 214.87689 * 15 14 13 17 17 C 1.53005 * 106.43024 * 91.55151 * 15 14 13 18 18 C 1.52933 * 110.49695 * 196.02906 * 17 15 14 19 19 C 1.53329 * 107.73140 * 63.65851 * 18 17 15 20 20 H 1.09002 * 109.73959 * 54.65498 * 19 18 17 21 21 O 1.42905 * 109.73661 * 175.30326 * 19 18 17 22 22 C 1.52832 * 108.14178 * 294.97735 * 19 18 17 23 23 C 1.50750 * 111.72454 * 58.90548 * 22 19 18 24 24 H 1.09005 * 109.25887 * 186.89031 * 23 22 19 25 25 C 1.47704 * 110.68331 * 169.88688 * 13 12 11 26 26 H 0.96998 * 120.00335 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.46977 * 59.99575 * 9 7 2 28 28 H 1.08997 * 109.46936 * 300.00190 * 9 7 2 29 29 H 1.08995 * 109.47224 * 59.99704 * 10 9 7 30 30 H 1.09003 * 109.46516 * 300.00120 * 10 9 7 31 31 H 1.09004 * 109.47594 * 60.00010 * 11 10 9 32 32 H 1.08995 * 109.47231 * 299.99310 * 11 10 9 33 33 H 1.09000 * 109.47318 * 59.99787 * 12 11 10 34 34 H 1.09005 * 109.47241 * 300.00268 * 12 11 10 35 35 H 1.09001 * 109.96104 * 119.37969 * 14 13 12 36 36 H 1.09001 * 110.00108 * 358.13598 * 14 13 12 37 37 H 1.09002 * 109.16440 * 317.45649 * 17 15 14 38 38 H 1.09006 * 109.16681 * 76.70377 * 17 15 14 39 39 H 1.08993 * 110.79331 * 303.68456 * 18 17 15 40 40 H 1.08999 * 109.22727 * 182.72813 * 18 17 15 41 41 H 0.96702 * 113.99404 * 299.34687 * 21 19 18 42 42 H 1.08992 * 109.02835 * 179.48732 * 22 19 18 43 43 H 1.08998 * 109.02531 * 298.32490 * 22 19 18 44 44 H 1.09006 * 110.85530 * 27.23805 * 25 13 12 45 45 H 1.08999 * 109.93513 * 264.68053 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8902 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0018 11 6 1.4804 -4.9870 0.0012 12 6 2.4746 -6.1500 0.0018 13 7 1.7402 -7.4222 0.0018 14 6 1.0647 -7.6429 1.2954 15 6 1.6131 -8.9777 1.8700 16 1 0.8612 -9.5426 2.4210 17 6 2.8128 -8.6113 2.7461 18 6 3.6606 -9.8500 3.0384 19 6 4.2234 -10.3561 1.7049 20 1 4.7571 -9.5502 1.2010 21 8 5.1122 -11.4501 1.9403 22 6 3.0522 -10.8197 0.8395 23 6 2.0666 -9.7064 0.5915 24 1 1.1927 -10.1075 0.0781 25 6 2.6576 -8.5542 -0.2402 26 1 -0.4850 0.8400 -0.0004 27 1 0.6247 -2.5571 -0.8896 28 1 0.6241 -2.5567 0.8903 29 1 2.8713 -3.6039 0.8922 30 1 2.8727 -3.6046 -0.8877 31 1 0.8546 -5.0450 -0.8895 32 1 0.8528 -5.0447 0.8905 33 1 3.1007 -6.0923 0.8922 34 1 3.1020 -6.0922 -0.8877 35 1 -0.0124 -7.7169 1.1449 36 1 1.2895 -6.8234 1.9780 37 1 3.4109 -7.8561 2.2361 38 1 2.4544 -8.2049 3.6919 39 1 3.0579 -10.6307 3.5024 40 1 4.4805 -9.5754 3.7022 41 1 5.8738 -11.2262 2.4927 42 1 3.4358 -11.1745 -0.1171 43 1 2.5417 -11.6409 1.3427 44 1 3.6657 -8.3161 0.0992 45 1 2.6606 -8.8101 -1.2997 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398772740.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:34 Heat of formation + Delta-G solvation = -81.994132 kcal Electronic energy + Delta-G solvation = -20785.487326 eV Core-core repulsion = 17801.061209 eV Total energy + Delta-G solvation = -2984.426118 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.72276 -37.66490 -35.49110 -33.94496 -32.37058 -31.82770 -30.30314 -28.12245 -26.92486 -24.85639 -23.05946 -22.40481 -21.70675 -20.39322 -19.93287 -19.03443 -17.65151 -16.40379 -16.18317 -15.46242 -15.13019 -14.93565 -14.53982 -14.37566 -14.11269 -13.42693 -13.32270 -12.89456 -12.84094 -12.59589 -12.35267 -12.17327 -11.91467 -11.68786 -11.56927 -11.34375 -11.07378 -10.94543 -10.85925 -10.79958 -10.45262 -10.43419 -10.36164 -10.21618 -9.99461 -9.60058 -9.23484 -8.97103 -8.31782 -8.23086 -5.96530 -3.98678 3.32363 3.39603 3.43855 3.77159 4.02996 4.23389 4.36607 4.48521 4.51084 4.67953 4.85509 4.88209 5.00969 5.12719 5.18442 5.24180 5.37650 5.39437 5.46314 5.53776 5.56317 5.60425 5.64183 5.69572 5.77677 5.81430 5.92928 5.98002 6.01144 6.05306 6.16276 6.18852 6.28571 6.54492 6.84055 7.00054 7.03727 7.11693 7.28153 7.30979 7.73117 7.89107 8.04920 8.47729 9.09155 9.65155 11.14866 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.037726 B = 0.003010 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.009196 B = 9301.092992 C = 9513.717618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.109 4.109 11 C -0.112 4.112 12 C 0.050 3.950 13 N -0.524 5.524 14 C 0.041 3.959 15 C -0.106 4.106 16 H 0.088 0.912 17 C -0.115 4.115 18 C -0.149 4.149 19 C 0.102 3.898 20 H 0.057 0.943 21 O -0.570 6.570 22 C -0.099 4.099 23 C -0.088 4.088 24 H 0.085 0.915 25 C 0.043 3.957 26 H 0.259 0.741 27 H 0.016 0.984 28 H 0.014 0.986 29 H 0.043 0.957 30 H 0.046 0.954 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.031 0.969 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.377 0.623 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.046 0.954 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.670 -22.921 4.782 24.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.557 4.557 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.147 4.147 11 C -0.150 4.150 12 C -0.077 4.077 13 N -0.248 5.248 14 C -0.087 4.087 15 C -0.126 4.126 16 H 0.106 0.894 17 C -0.152 4.152 18 C -0.187 4.187 19 C 0.043 3.957 20 H 0.075 0.925 21 O -0.376 6.376 22 C -0.137 4.137 23 C -0.108 4.108 24 H 0.103 0.897 25 C -0.085 4.085 26 H 0.069 0.931 27 H 0.034 0.966 28 H 0.032 0.968 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.049 0.951 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.224 0.776 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.065 0.935 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.706 -23.061 3.990 24.089 hybrid contribution 1.404 1.371 1.033 2.218 sum 7.111 -21.690 5.023 23.372 Atomic orbital electron populations 1.69979 1.06039 1.26391 1.51148 1.25037 0.94842 0.99227 0.95460 0.86562 0.80119 0.83923 0.77557 1.19774 1.21012 1.21056 1.21332 0.93035 0.91229 1.50150 0.92754 1.19087 0.94018 0.91327 0.97142 1.21600 0.99084 0.94109 0.99952 1.21642 0.97804 0.93491 1.02058 1.22437 0.95943 0.89141 1.00218 1.63851 1.28122 1.02027 1.30807 1.23198 0.99710 0.95844 0.89959 1.22457 0.97558 0.96757 0.95802 0.89353 1.21634 0.96519 0.97121 0.99954 1.22311 1.00214 0.98468 0.97658 1.21885 0.90500 0.88273 0.95014 0.92506 1.86482 1.38986 1.37813 1.74286 1.20803 0.94682 0.98096 1.00073 1.21377 0.98537 0.94748 0.96091 0.89708 1.22931 0.94921 0.90378 1.00230 0.93112 0.96603 0.96772 0.93806 0.93517 0.91710 0.92696 0.95105 0.91178 0.90578 0.91887 0.91704 0.91546 0.90876 0.91865 0.77566 0.91135 0.91096 0.93542 0.90382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.45 13.29 55.43 0.74 -26.71 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.52 -15.04 9.11 -34.44 -0.31 -15.36 16 8 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.11 -2.29 5.15 -26.73 -0.14 -2.43 16 11 C -0.11 -1.96 5.24 -26.73 -0.14 -2.10 16 12 C 0.05 0.73 4.52 -3.82 -0.02 0.71 16 13 N -0.52 -6.79 5.19 -231.23 -1.20 -7.99 16 14 C 0.04 0.48 5.53 -2.21 -0.01 0.46 16 15 C -0.11 -0.99 3.58 -88.87 -0.32 -1.31 16 16 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 17 C -0.11 -1.03 4.61 -26.76 -0.12 -1.15 16 18 C -0.15 -1.17 5.60 -26.60 -0.15 -1.32 16 19 C 0.10 0.86 3.29 -26.65 -0.09 0.77 16 20 H 0.06 0.50 6.79 -51.93 -0.35 0.15 16 21 O -0.57 -4.96 13.34 -35.23 -0.47 -5.43 16 22 C -0.10 -0.85 5.04 -27.95 -0.14 -0.99 16 23 C -0.09 -0.81 2.86 -90.77 -0.26 -1.07 16 24 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 25 C 0.04 0.46 5.53 -2.91 -0.02 0.45 16 26 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.05 0.97 7.10 -51.93 -0.37 0.60 16 33 H 0.03 0.43 7.38 -51.93 -0.38 0.05 16 34 H 0.07 1.00 8.07 -51.93 -0.42 0.58 16 35 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.06 0.79 6.46 -51.93 -0.34 0.45 16 37 H 0.06 0.66 6.47 -51.93 -0.34 0.33 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.38 1.78 9.09 45.56 0.41 2.20 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.05 0.49 5.74 -51.93 -0.30 0.20 16 45 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 340.32 15.07 5.13 5.13 Total: -1.00 -31.51 340.32 -10.32 -41.83 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -7.54 Total: -2.37 kcal Atomic # 6 Polarization: -19.44 SS G_CDS: -1.95 Total: -21.40 kcal Atomic # 7 Polarization: -34.23 SS G_CDS: -0.46 Total: -34.70 kcal Atomic # 8 Polarization: -4.96 SS G_CDS: -0.47 Total: -5.43 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.51 -10.32 -41.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398772740.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.167 kcal (2) G-P(sol) polarization free energy of solvation -31.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds