Wall clock time and date at job start Mon Mar 30 2020 06:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 119.99679 * 2 1 4 4 H 1.48501 * 109.46649 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46658 * 299.99242 * 3 2 1 6 6 H 1.48493 * 109.47219 * 59.99469 * 3 2 1 7 7 C 1.37874 * 119.99941 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99574 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00317 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47222 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.46918 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47080 * 179.97438 * 11 10 9 13 13 N 1.46902 * 109.47368 * 179.97438 * 12 11 10 14 14 C 1.47595 * 110.99751 * 290.12455 * 13 12 11 15 15 C 1.55325 * 106.92358 * 238.74628 * 14 13 12 16 16 H 1.09002 * 112.88036 * 214.87689 * 15 14 13 17 17 C 1.53005 * 106.43024 * 91.55151 * 15 14 13 18 18 C 1.52933 * 110.49695 * 196.02906 * 17 15 14 19 19 C 1.53329 * 107.73140 * 63.65851 * 18 17 15 20 20 H 1.09002 * 109.73959 * 54.65498 * 19 18 17 21 21 O 1.42905 * 109.73661 * 175.30326 * 19 18 17 22 22 C 1.52832 * 108.14178 * 294.97735 * 19 18 17 23 23 C 1.50750 * 111.72454 * 58.90548 * 22 19 18 24 24 H 1.09005 * 109.25887 * 186.89031 * 23 22 19 25 25 C 1.47704 * 110.68331 * 169.88688 * 13 12 11 26 26 H 0.96998 * 120.00335 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.46977 * 59.99575 * 9 7 2 28 28 H 1.08997 * 109.46936 * 300.00190 * 9 7 2 29 29 H 1.08995 * 109.47224 * 59.99704 * 10 9 7 30 30 H 1.09003 * 109.46516 * 300.00120 * 10 9 7 31 31 H 1.09004 * 109.47594 * 60.00010 * 11 10 9 32 32 H 1.08995 * 109.47231 * 299.99310 * 11 10 9 33 33 H 1.09000 * 109.47318 * 59.99787 * 12 11 10 34 34 H 1.09005 * 109.47241 * 300.00268 * 12 11 10 35 35 H 1.09001 * 109.96104 * 119.37969 * 14 13 12 36 36 H 1.09001 * 110.00108 * 358.13598 * 14 13 12 37 37 H 1.09002 * 109.16440 * 317.45649 * 17 15 14 38 38 H 1.09006 * 109.16681 * 76.70377 * 17 15 14 39 39 H 1.08993 * 110.79331 * 303.68456 * 18 17 15 40 40 H 1.08999 * 109.22727 * 182.72813 * 18 17 15 41 41 H 0.96702 * 113.99404 * 299.34687 * 21 19 18 42 42 H 1.08992 * 109.02835 * 179.48732 * 22 19 18 43 43 H 1.08998 * 109.02531 * 298.32490 * 22 19 18 44 44 H 1.09006 * 110.85530 * 27.23805 * 25 13 12 45 45 H 1.08999 * 109.93513 * 264.68053 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8902 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0018 11 6 1.4804 -4.9870 0.0012 12 6 2.4746 -6.1500 0.0018 13 7 1.7402 -7.4222 0.0018 14 6 1.0647 -7.6429 1.2954 15 6 1.6131 -8.9777 1.8700 16 1 0.8612 -9.5426 2.4210 17 6 2.8128 -8.6113 2.7461 18 6 3.6606 -9.8500 3.0384 19 6 4.2234 -10.3561 1.7049 20 1 4.7571 -9.5502 1.2010 21 8 5.1122 -11.4501 1.9403 22 6 3.0522 -10.8197 0.8395 23 6 2.0666 -9.7064 0.5915 24 1 1.1927 -10.1075 0.0781 25 6 2.6576 -8.5542 -0.2402 26 1 -0.4850 0.8400 -0.0004 27 1 0.6247 -2.5571 -0.8896 28 1 0.6241 -2.5567 0.8903 29 1 2.8713 -3.6039 0.8922 30 1 2.8727 -3.6046 -0.8877 31 1 0.8546 -5.0450 -0.8895 32 1 0.8528 -5.0447 0.8905 33 1 3.1007 -6.0923 0.8922 34 1 3.1020 -6.0922 -0.8877 35 1 -0.0124 -7.7169 1.1449 36 1 1.2895 -6.8234 1.9780 37 1 3.4109 -7.8561 2.2361 38 1 2.4544 -8.2049 3.6919 39 1 3.0579 -10.6307 3.5024 40 1 4.4805 -9.5754 3.7022 41 1 5.8738 -11.2262 2.4927 42 1 3.4358 -11.1745 -0.1171 43 1 2.5417 -11.6409 1.3427 44 1 3.6657 -8.3161 0.0992 45 1 2.6606 -8.8101 -1.2997 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398772740.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:33 Heat of formation + Delta-G solvation = -103.086431 kcal Electronic energy + Delta-G solvation = -20786.401957 eV Core-core repulsion = 17801.061209 eV Total energy + Delta-G solvation = -2985.340748 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.53080 -38.46483 -36.80354 -35.41554 -34.04459 -32.66965 -31.47896 -29.55851 -27.88743 -26.44742 -24.29679 -23.19168 -22.74484 -21.90407 -21.26259 -19.78961 -18.44689 -18.28684 -17.22306 -16.62223 -16.38601 -16.18391 -15.68925 -15.53932 -14.98492 -14.58991 -14.38676 -14.17118 -13.98360 -13.75755 -13.52272 -13.25290 -13.13185 -12.94480 -12.79401 -12.68118 -12.42632 -12.25542 -12.15303 -12.07100 -11.83576 -11.64941 -11.50678 -11.32428 -11.28585 -11.01102 -10.86612 -10.64676 -10.56765 -9.23087 -8.20542 -6.32235 1.39067 1.39646 1.53170 2.40323 2.98776 3.12138 3.22716 3.49523 3.65600 3.74246 3.94219 4.09046 4.13588 4.18967 4.20377 4.31546 4.39181 4.48337 4.50308 4.56506 4.57535 4.69602 4.80636 4.83686 4.86168 4.89318 4.91051 5.03259 5.06065 5.08381 5.17146 5.24232 5.26203 5.28574 5.33427 5.35128 5.45523 5.54522 5.76531 5.86019 6.05742 6.14063 6.25199 6.85533 6.86865 7.37247 8.91642 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.037726 B = 0.003010 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.009196 B = 9301.092992 C = 9513.717618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.967 3.033 4 H -0.261 1.261 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.544 4.544 8 H 0.060 0.940 9 C 0.024 3.976 10 C -0.096 4.096 11 C -0.101 4.101 12 C 0.062 3.938 13 N -0.537 5.537 14 C 0.037 3.963 15 C -0.099 4.099 16 H 0.101 0.899 17 C -0.112 4.112 18 C -0.142 4.142 19 C 0.103 3.897 20 H 0.054 0.946 21 O -0.584 6.584 22 C -0.096 4.096 23 C -0.079 4.079 24 H 0.085 0.915 25 C 0.043 3.957 26 H 0.264 0.736 27 H -0.012 1.012 28 H -0.012 1.012 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.037 0.963 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.394 0.606 42 H 0.069 0.931 43 H 0.073 0.927 44 H 0.050 0.950 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.208 -23.634 5.271 25.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.791 3.209 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.582 4.582 8 H 0.078 0.922 9 C -0.013 4.013 10 C -0.134 4.134 11 C -0.139 4.139 12 C -0.066 4.066 13 N -0.261 5.261 14 C -0.090 4.090 15 C -0.118 4.118 16 H 0.119 0.881 17 C -0.150 4.150 18 C -0.179 4.179 19 C 0.044 3.956 20 H 0.071 0.929 21 O -0.392 6.392 22 C -0.134 4.134 23 C -0.099 4.099 24 H 0.104 0.896 25 C -0.084 4.084 26 H 0.072 0.928 27 H 0.007 0.993 28 H 0.007 0.993 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.055 0.945 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.243 0.757 42 H 0.088 0.912 43 H 0.092 0.908 44 H 0.068 0.932 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.262 -23.793 4.486 25.278 hybrid contribution 0.885 1.575 0.878 2.009 sum 8.148 -22.218 5.364 24.265 Atomic orbital electron populations 1.70114 1.07882 1.27724 1.51812 1.26034 0.95804 1.03520 0.94729 0.85372 0.79081 0.78597 0.77836 1.18480 1.20304 1.20279 1.21771 0.93568 0.92491 1.50357 0.92169 1.19009 0.94475 0.93316 0.94522 1.21402 0.97965 0.93684 1.00393 1.21459 0.97967 0.93242 1.01229 1.22203 0.94938 0.88752 1.00701 1.63783 1.28646 1.02016 1.31675 1.23215 0.99484 0.96918 0.89412 1.22440 0.97943 0.95457 0.95982 0.88068 1.21590 0.96291 0.97386 0.99733 1.22251 1.00326 0.97786 0.97578 1.21840 0.90417 0.88115 0.95187 0.92856 1.86443 1.39839 1.38083 1.74884 1.20766 0.94666 0.97740 1.00217 1.21298 0.98622 0.94331 0.95600 0.89633 1.22972 0.94740 0.90035 1.00697 0.92763 0.99348 0.99334 0.93182 0.93047 0.92904 0.93200 0.94515 0.90768 0.91039 0.92954 0.92959 0.91356 0.90657 0.90753 0.75679 0.91201 0.90813 0.93193 0.90193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.25 13.29 21.45 0.28 -57.97 16 2 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 3 Si 0.97 44.94 29.54 68.60 2.03 46.96 16 4 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 6 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 7 C -0.54 -31.85 9.11 25.60 0.23 -31.61 16 8 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 9 C 0.02 1.31 4.97 29.85 0.15 1.46 16 10 C -0.10 -4.06 5.15 30.59 0.16 -3.91 16 11 C -0.10 -3.57 5.24 30.59 0.16 -3.41 16 12 C 0.06 1.75 4.52 86.30 0.39 2.13 16 13 N -0.54 -13.49 5.19 -885.46 -4.60 -18.09 16 14 C 0.04 0.85 5.53 86.97 0.48 1.33 16 15 C -0.10 -1.69 3.58 -9.66 -0.03 -1.73 16 16 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 17 C -0.11 -1.83 4.61 30.57 0.14 -1.69 16 18 C -0.14 -1.91 5.60 30.68 0.17 -1.74 16 19 C 0.10 1.53 3.29 30.65 0.10 1.63 16 20 H 0.05 0.84 6.79 -2.39 -0.02 0.82 16 21 O -0.58 -8.92 13.34 -148.98 -1.99 -10.91 16 22 C -0.10 -1.47 5.04 29.81 0.15 -1.32 16 23 C -0.08 -1.33 2.86 -10.89 -0.03 -1.36 16 24 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 25 C 0.04 0.86 5.53 86.45 0.48 1.34 16 26 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 27 H -0.01 -0.71 8.14 -2.39 -0.02 -0.72 16 28 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 29 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 32 H 0.05 1.80 7.10 -2.39 -0.02 1.78 16 33 H 0.04 0.99 7.38 -2.39 -0.02 0.98 16 34 H 0.07 2.03 8.07 -2.38 -0.02 2.01 16 35 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.05 1.30 6.46 -2.39 -0.02 1.28 16 37 H 0.05 0.99 6.47 -2.39 -0.02 0.98 16 38 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 39 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.39 2.87 9.09 -74.06 -0.67 2.19 16 42 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.05 0.98 5.74 -2.38 -0.01 0.97 16 45 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -67.35 340.32 -1.00 -68.35 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: 0.27 Total: 10.26 kcal Atomic # 6 Polarization: -41.62 SS G_CDS: 3.01 Total: -38.61 kcal Atomic # 7 Polarization: -71.74 SS G_CDS: -4.31 Total: -76.05 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: -1.99 Total: -10.91 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.96 kcal Total: -67.35 -1.00 -68.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398772740.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.741 kcal (2) G-P(sol) polarization free energy of solvation -67.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds