Wall clock time and date at job start Mon Mar 30 2020 06:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 120.00027 * 2 1 4 4 H 1.48493 * 109.47167 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46941 * 300.00146 * 3 2 1 6 6 H 1.48503 * 109.47122 * 59.99743 * 3 2 1 7 7 C 1.37872 * 120.00330 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00226 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99638 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.46887 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47071 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47071 * 179.97438 * 11 10 9 13 13 N 1.46909 * 109.46926 * 174.64235 * 12 11 10 14 14 C 1.48645 * 111.00303 * 55.81730 * 13 12 11 15 15 C 1.52331 * 105.83776 * 118.88913 * 14 13 12 16 16 H 1.09005 * 109.88032 * 272.31644 * 15 14 13 17 17 C 1.51454 * 117.39197 * 145.38909 * 15 14 13 18 18 C 1.53844 * 107.05723 * 181.18318 * 17 15 14 19 19 C 1.52528 * 111.65150 * 57.21050 * 18 17 15 20 20 H 1.08997 * 109.03198 * 66.48509 * 19 18 17 21 21 O 1.42897 * 109.03504 * 185.34747 * 19 18 17 22 22 C 1.53804 * 111.69001 * 305.91932 * 19 18 17 23 23 C 1.51628 * 107.03631 * 57.55207 * 22 19 18 24 24 H 1.08998 * 110.49850 * 56.34131 * 23 22 19 25 25 C 1.49065 * 110.99833 * 176.32415 * 13 12 11 26 26 H 0.97005 * 120.00259 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.46643 * 60.00369 * 9 7 2 28 28 H 1.08994 * 109.47252 * 300.00013 * 9 7 2 29 29 H 1.08999 * 109.47263 * 60.00146 * 10 9 7 30 30 H 1.09002 * 109.47529 * 299.99888 * 10 9 7 31 31 H 1.09005 * 109.46998 * 60.00392 * 11 10 9 32 32 H 1.08994 * 109.47160 * 300.00359 * 11 10 9 33 33 H 1.08999 * 109.47405 * 54.64007 * 12 11 10 34 34 H 1.09005 * 109.47355 * 294.63664 * 12 11 10 35 35 H 1.09004 * 110.17730 * 237.98744 * 14 13 12 36 36 H 1.09002 * 110.17451 * 359.79621 * 14 13 12 37 37 H 1.08997 * 109.93932 * 61.79982 * 17 15 14 38 38 H 1.08997 * 109.93952 * 300.57082 * 17 15 14 39 39 H 1.09003 * 109.04016 * 296.65793 * 18 17 15 40 40 H 1.09001 * 109.04322 * 177.77544 * 18 17 15 41 41 H 0.96704 * 113.99964 * 299.99820 * 21 19 18 42 42 H 1.09006 * 109.94338 * 176.93299 * 22 19 18 43 43 H 1.08998 * 109.94414 * 298.08273 * 22 19 18 44 44 H 1.09003 * 110.63506 * 95.07490 * 25 13 12 45 45 H 1.09002 * 110.77174 * 332.10167 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3464 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6620 0.0005 11 6 1.4802 -4.9871 0.0012 12 6 2.4745 -6.1499 0.0005 13 7 1.7446 -7.4182 0.1305 14 6 0.7233 -7.5574 -0.9406 15 6 1.1141 -8.8011 -1.7285 16 1 1.8165 -8.5342 -2.5182 17 6 -0.0068 -9.6503 -2.2911 18 6 0.6475 -10.8446 -3.0068 19 6 1.5470 -11.6403 -2.0664 20 1 0.9316 -12.1128 -1.3010 21 8 2.2201 -12.6556 -2.8134 22 6 2.5931 -10.7419 -1.3851 23 6 1.8336 -9.6570 -0.6466 24 1 1.1242 -10.0972 0.0541 25 6 2.6740 -8.5805 0.0449 26 1 -0.4851 0.8401 0.0004 27 1 0.6247 -2.5570 -0.8897 28 1 0.6240 -2.5567 0.8902 29 1 2.8719 -3.6043 0.8905 30 1 2.8719 -3.6043 -0.8895 31 1 0.8533 -5.0451 -0.8887 32 1 0.8539 -5.0445 0.8913 33 1 3.1633 -6.0396 0.8381 34 1 3.0356 -6.1478 -0.9340 35 1 -0.2663 -7.6855 -0.5020 36 1 0.7372 -6.6815 -1.5893 37 1 -0.5940 -9.0679 -3.0010 38 1 -0.6454 -10.0059 -1.4825 39 1 1.2434 -10.4759 -3.8417 40 1 -0.1338 -11.5003 -3.3912 41 1 1.6263 -13.2842 -3.2465 42 1 3.1838 -11.3276 -0.6805 43 1 3.2455 -10.2957 -2.1356 44 1 2.9730 -8.9075 1.0408 45 1 3.5494 -8.3322 -0.5554 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398772745.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:39 Heat of formation + Delta-G solvation = -78.919038 kcal Electronic energy + Delta-G solvation = -20495.150440 eV Core-core repulsion = 17510.857668 eV Total energy + Delta-G solvation = -2984.292771 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.51270 -37.82123 -35.62521 -34.07890 -32.43484 -31.65933 -30.14076 -28.05415 -27.06454 -24.89893 -23.07360 -21.74025 -21.39188 -20.60713 -20.20598 -19.62162 -17.47273 -16.17765 -15.97641 -15.56615 -15.39045 -14.90915 -14.48098 -14.44224 -14.12157 -13.61025 -13.25141 -13.08413 -12.69843 -12.48003 -12.28772 -12.18270 -11.87048 -11.59767 -11.38126 -11.32937 -11.13119 -10.95992 -10.91832 -10.71878 -10.53569 -10.44039 -10.41130 -10.31935 -9.94165 -9.58157 -9.22935 -8.96712 -8.31386 -8.23408 -5.96163 -3.98176 3.32945 3.40182 3.44652 3.67311 3.99063 4.23732 4.35545 4.49227 4.51583 4.66900 4.82693 4.95815 5.08263 5.10748 5.26002 5.29340 5.34928 5.39383 5.43283 5.44944 5.56047 5.62956 5.67099 5.69066 5.75501 5.86528 5.88482 5.94173 6.00613 6.03312 6.20791 6.24025 6.32094 6.52842 6.84613 6.97919 7.00460 7.12513 7.26681 7.28528 7.73466 7.89329 8.05227 8.48241 9.09624 9.65670 11.15266 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.047425 B = 0.002763 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.263435 B =10131.560375 C =10369.279216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.109 4.109 11 C -0.117 4.117 12 C 0.050 3.950 13 N -0.527 5.527 14 C 0.044 3.956 15 C -0.117 4.117 16 H 0.073 0.927 17 C -0.100 4.100 18 C -0.151 4.151 19 C 0.107 3.893 20 H 0.052 0.948 21 O -0.570 6.570 22 C -0.097 4.097 23 C -0.100 4.100 24 H 0.086 0.914 25 C 0.049 3.951 26 H 0.259 0.741 27 H 0.014 0.986 28 H 0.016 0.984 29 H 0.047 0.953 30 H 0.044 0.956 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.029 0.971 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.376 0.624 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.080 0.920 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.377 -25.174 -4.447 25.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.147 4.147 11 C -0.155 4.155 12 C -0.077 4.077 13 N -0.251 5.251 14 C -0.083 4.083 15 C -0.136 4.136 16 H 0.091 0.909 17 C -0.138 4.138 18 C -0.189 4.189 19 C 0.048 3.952 20 H 0.070 0.930 21 O -0.376 6.376 22 C -0.135 4.135 23 C -0.119 4.119 24 H 0.104 0.896 25 C -0.078 4.078 26 H 0.069 0.931 27 H 0.032 0.968 28 H 0.034 0.966 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.047 0.953 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.223 0.777 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.098 0.902 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 1.525 -24.708 -3.731 25.034 hybrid contribution 0.293 0.729 -1.049 1.311 sum 1.818 -23.979 -4.780 24.518 Atomic orbital electron populations 1.69978 1.06046 1.26385 1.51199 1.25036 0.94845 0.99239 0.95464 0.86559 0.80130 0.83905 0.77550 1.19770 1.21052 1.21020 1.21332 0.93053 0.91210 1.50091 0.92727 1.19093 0.94030 0.91367 0.97118 1.21594 0.99073 0.93959 1.00063 1.21751 0.97898 0.93830 1.01980 1.22395 0.96469 0.88952 0.99918 1.64442 1.13419 1.01950 1.45281 1.22628 0.96846 0.96614 0.92216 1.22152 0.98359 0.95452 0.97674 0.90890 1.21220 0.97075 0.95455 1.00099 1.22289 0.99142 0.97999 0.99430 1.21867 0.93005 0.88049 0.92234 0.92991 1.86535 1.38087 1.42980 1.69994 1.21263 0.97193 0.95946 0.99102 1.21979 0.98356 0.94850 0.96684 0.89575 1.22778 0.94377 0.90379 1.00312 0.93120 0.96793 0.96597 0.93417 0.93737 0.92573 0.91596 0.90886 0.95269 0.90417 0.91395 0.91204 0.91289 0.91246 0.91825 0.77717 0.91039 0.91048 0.90194 0.93390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.49 13.29 55.43 0.74 -26.76 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 4 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.52 -15.06 9.11 -34.44 -0.31 -15.38 16 8 H 0.05 1.54 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.11 -2.29 5.15 -26.73 -0.14 -2.43 16 11 C -0.12 -2.05 4.90 -26.73 -0.13 -2.18 16 12 C 0.05 0.75 4.86 -3.82 -0.02 0.73 16 13 N -0.53 -6.99 5.32 -231.58 -1.23 -8.22 16 14 C 0.04 0.54 5.98 -3.20 -0.02 0.52 16 15 C -0.12 -1.15 2.29 -90.36 -0.21 -1.36 16 16 H 0.07 0.77 7.94 -51.93 -0.41 0.36 16 17 C -0.10 -0.81 5.70 -27.07 -0.15 -0.96 16 18 C -0.15 -1.10 5.43 -26.53 -0.14 -1.24 16 19 C 0.11 0.84 3.43 -26.55 -0.09 0.75 16 20 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 21 O -0.57 -4.74 13.28 -35.23 -0.47 -5.21 16 22 C -0.10 -0.85 5.34 -27.01 -0.14 -1.00 16 23 C -0.10 -0.93 2.47 -89.89 -0.22 -1.15 16 24 H 0.09 0.81 8.07 -51.93 -0.42 0.39 16 25 C 0.05 0.54 6.35 -2.58 -0.02 0.52 16 26 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 27 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.06 0.98 6.36 -51.93 -0.33 0.65 16 32 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.03 0.43 8.02 -51.93 -0.42 0.01 16 35 H 0.08 0.93 8.08 -51.93 -0.42 0.51 16 36 H 0.07 0.89 5.93 -51.93 -0.31 0.59 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.53 8.06 -51.93 -0.42 0.11 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.38 1.54 9.07 45.56 0.41 1.96 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.07 0.69 7.99 -51.93 -0.41 0.27 16 44 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.05 0.53 7.77 -51.93 -0.40 0.12 16 LS Contribution 345.26 15.07 5.20 5.20 Total: -1.00 -31.65 345.26 -10.36 -42.02 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -7.74 Total: -2.78 kcal Atomic # 6 Polarization: -19.42 SS G_CDS: -1.84 Total: -21.25 kcal Atomic # 7 Polarization: -34.48 SS G_CDS: -0.50 Total: -34.98 kcal Atomic # 8 Polarization: -4.74 SS G_CDS: -0.47 Total: -5.21 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.65 -10.36 -42.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398772745.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.903 kcal (2) G-P(sol) polarization free energy of solvation -31.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds