Wall clock time and date at job start Mon Mar 30 2020 06:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 120.00027 * 2 1 4 4 H 1.48493 * 109.47167 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46941 * 300.00146 * 3 2 1 6 6 H 1.48503 * 109.47122 * 59.99743 * 3 2 1 7 7 C 1.37872 * 120.00330 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00226 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99638 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.46887 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47071 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47071 * 179.97438 * 11 10 9 13 13 N 1.46909 * 109.46926 * 174.64235 * 12 11 10 14 14 C 1.48645 * 111.00303 * 55.81730 * 13 12 11 15 15 C 1.52331 * 105.83776 * 118.88913 * 14 13 12 16 16 H 1.09005 * 109.88032 * 272.31644 * 15 14 13 17 17 C 1.51454 * 117.39197 * 145.38909 * 15 14 13 18 18 C 1.53844 * 107.05723 * 181.18318 * 17 15 14 19 19 C 1.52528 * 111.65150 * 57.21050 * 18 17 15 20 20 H 1.08997 * 109.03198 * 66.48509 * 19 18 17 21 21 O 1.42897 * 109.03504 * 185.34747 * 19 18 17 22 22 C 1.53804 * 111.69001 * 305.91932 * 19 18 17 23 23 C 1.51628 * 107.03631 * 57.55207 * 22 19 18 24 24 H 1.08998 * 110.49850 * 56.34131 * 23 22 19 25 25 C 1.49065 * 110.99833 * 176.32415 * 13 12 11 26 26 H 0.97005 * 120.00259 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.46643 * 60.00369 * 9 7 2 28 28 H 1.08994 * 109.47252 * 300.00013 * 9 7 2 29 29 H 1.08999 * 109.47263 * 60.00146 * 10 9 7 30 30 H 1.09002 * 109.47529 * 299.99888 * 10 9 7 31 31 H 1.09005 * 109.46998 * 60.00392 * 11 10 9 32 32 H 1.08994 * 109.47160 * 300.00359 * 11 10 9 33 33 H 1.08999 * 109.47405 * 54.64007 * 12 11 10 34 34 H 1.09005 * 109.47355 * 294.63664 * 12 11 10 35 35 H 1.09004 * 110.17730 * 237.98744 * 14 13 12 36 36 H 1.09002 * 110.17451 * 359.79621 * 14 13 12 37 37 H 1.08997 * 109.93932 * 61.79982 * 17 15 14 38 38 H 1.08997 * 109.93952 * 300.57082 * 17 15 14 39 39 H 1.09003 * 109.04016 * 296.65793 * 18 17 15 40 40 H 1.09001 * 109.04322 * 177.77544 * 18 17 15 41 41 H 0.96704 * 113.99964 * 299.99820 * 21 19 18 42 42 H 1.09006 * 109.94338 * 176.93299 * 22 19 18 43 43 H 1.08998 * 109.94414 * 298.08273 * 22 19 18 44 44 H 1.09003 * 110.63506 * 95.07490 * 25 13 12 45 45 H 1.09002 * 110.77174 * 332.10167 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3464 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6620 0.0005 11 6 1.4802 -4.9871 0.0012 12 6 2.4745 -6.1499 0.0005 13 7 1.7446 -7.4182 0.1305 14 6 0.7233 -7.5574 -0.9406 15 6 1.1141 -8.8011 -1.7285 16 1 1.8165 -8.5342 -2.5182 17 6 -0.0068 -9.6503 -2.2911 18 6 0.6475 -10.8446 -3.0068 19 6 1.5470 -11.6403 -2.0664 20 1 0.9316 -12.1128 -1.3010 21 8 2.2201 -12.6556 -2.8134 22 6 2.5931 -10.7419 -1.3851 23 6 1.8336 -9.6570 -0.6466 24 1 1.1242 -10.0972 0.0541 25 6 2.6740 -8.5805 0.0449 26 1 -0.4851 0.8401 0.0004 27 1 0.6247 -2.5570 -0.8897 28 1 0.6240 -2.5567 0.8902 29 1 2.8719 -3.6043 0.8905 30 1 2.8719 -3.6043 -0.8895 31 1 0.8533 -5.0451 -0.8887 32 1 0.8539 -5.0445 0.8913 33 1 3.1633 -6.0396 0.8381 34 1 3.0356 -6.1478 -0.9340 35 1 -0.2663 -7.6855 -0.5020 36 1 0.7372 -6.6815 -1.5893 37 1 -0.5940 -9.0679 -3.0010 38 1 -0.6454 -10.0059 -1.4825 39 1 1.2434 -10.4759 -3.8417 40 1 -0.1338 -11.5003 -3.3912 41 1 1.6263 -13.2842 -3.2465 42 1 3.1838 -11.3276 -0.6805 43 1 3.2455 -10.2957 -2.1356 44 1 2.9730 -8.9075 1.0408 45 1 3.5494 -8.3322 -0.5554 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398772745.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:38 Heat of formation + Delta-G solvation = -100.085606 kcal Electronic energy + Delta-G solvation = -20496.068291 eV Core-core repulsion = 17510.857668 eV Total energy + Delta-G solvation = -2985.210623 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.32212 -38.62363 -36.85090 -35.55469 -34.14092 -32.55764 -31.35946 -29.40704 -28.06417 -26.44936 -24.40657 -22.67141 -22.37140 -21.78881 -21.39643 -20.71600 -18.43171 -18.07646 -17.02326 -16.61470 -16.36853 -16.20633 -15.92247 -15.32989 -15.09923 -14.67132 -14.47678 -14.09268 -13.99774 -13.76192 -13.65832 -13.18821 -13.06792 -12.86208 -12.79143 -12.59707 -12.28677 -12.22926 -12.16033 -12.00236 -11.81877 -11.71621 -11.55366 -11.31841 -11.29761 -11.04729 -10.96228 -10.60226 -10.56776 -9.27485 -8.20799 -6.32293 1.38918 1.39473 1.53059 2.40205 2.90025 3.11915 3.14273 3.52923 3.66478 3.81220 3.96194 4.06227 4.13463 4.19892 4.27196 4.37033 4.43048 4.47641 4.51331 4.55852 4.58206 4.62798 4.71706 4.83794 4.86022 4.88797 4.96200 5.00971 5.04924 5.14244 5.18636 5.21769 5.25764 5.27202 5.31634 5.33955 5.49829 5.53918 5.76251 5.85561 5.97259 6.10702 6.25145 6.85280 6.89282 7.37102 8.91402 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.047425 B = 0.002763 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.263435 B =10131.560375 C =10369.279216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.967 3.033 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.544 4.544 8 H 0.059 0.941 9 C 0.024 3.976 10 C -0.096 4.096 11 C -0.105 4.105 12 C 0.061 3.939 13 N -0.539 5.539 14 C 0.042 3.958 15 C -0.112 4.112 16 H 0.063 0.937 17 C -0.098 4.098 18 C -0.145 4.145 19 C 0.108 3.892 20 H 0.064 0.936 21 O -0.588 6.588 22 C -0.096 4.096 23 C -0.089 4.089 24 H 0.091 0.909 25 C 0.047 3.953 26 H 0.264 0.736 27 H -0.011 1.011 28 H -0.011 1.011 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.076 0.924 34 H 0.032 0.968 35 H 0.078 0.922 36 H 0.052 0.948 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.058 0.942 40 H 0.082 0.918 41 H 0.394 0.606 42 H 0.074 0.926 43 H 0.059 0.941 44 H 0.087 0.913 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.160 -26.209 -4.630 26.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.791 3.209 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.582 4.582 8 H 0.078 0.922 9 C -0.013 4.013 10 C -0.134 4.134 11 C -0.143 4.143 12 C -0.067 4.067 13 N -0.263 5.263 14 C -0.085 4.085 15 C -0.131 4.131 16 H 0.082 0.918 17 C -0.136 4.136 18 C -0.182 4.182 19 C 0.050 3.950 20 H 0.082 0.918 21 O -0.396 6.396 22 C -0.134 4.134 23 C -0.108 4.108 24 H 0.110 0.890 25 C -0.080 4.080 26 H 0.073 0.927 27 H 0.007 0.993 28 H 0.008 0.992 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.050 0.950 35 H 0.096 0.904 36 H 0.071 0.929 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.077 0.923 40 H 0.101 0.899 41 H 0.243 0.757 42 H 0.092 0.908 43 H 0.078 0.922 44 H 0.106 0.894 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.309 -25.771 -3.922 26.170 hybrid contribution 0.009 1.027 -0.993 1.429 sum 2.318 -24.744 -4.916 25.334 Atomic orbital electron populations 1.70110 1.07855 1.27727 1.51825 1.26027 0.95815 1.03503 0.94737 0.85375 0.79046 0.78619 0.77862 1.18570 1.20253 1.20257 1.21765 0.93548 0.92507 1.50343 0.92236 1.19013 0.94472 0.93270 0.94582 1.21399 0.97982 0.93652 1.00406 1.21568 0.98006 0.93342 1.01381 1.22176 0.95569 0.88717 1.00217 1.64415 1.13976 1.01924 1.45939 1.22631 0.96664 0.97196 0.92059 1.22082 0.98943 0.94753 0.97339 0.91823 1.21217 0.96520 0.95457 1.00387 1.22232 0.99380 0.97810 0.98821 1.21834 0.92624 0.88001 0.92552 0.91844 1.86489 1.39320 1.43525 1.70296 1.21228 0.97368 0.95890 0.98878 1.21884 0.98015 0.94494 0.96359 0.89042 1.22846 0.94174 0.89950 1.01024 0.92747 0.99274 0.99231 0.93010 0.93267 0.92824 0.92608 0.90539 0.94990 0.90384 0.92906 0.91109 0.90503 0.92307 0.89890 0.75650 0.90764 0.92186 0.89433 0.93442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.28 13.29 21.44 0.28 -58.00 16 2 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 3 Si 0.97 45.14 29.54 68.60 2.03 47.16 16 4 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 6 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 7 C -0.54 -31.96 9.11 25.60 0.23 -31.73 16 8 H 0.06 3.36 7.74 -2.91 -0.02 3.33 16 9 C 0.02 1.30 4.97 29.85 0.15 1.45 16 10 C -0.10 -4.10 5.15 30.59 0.16 -3.94 16 11 C -0.11 -3.74 4.90 30.59 0.15 -3.59 16 12 C 0.06 1.78 4.86 86.30 0.42 2.20 16 13 N -0.54 -13.88 5.32 -886.60 -4.72 -18.60 16 14 C 0.04 1.00 5.98 85.74 0.51 1.51 16 15 C -0.11 -2.08 2.29 -10.63 -0.02 -2.11 16 16 H 0.06 1.32 7.94 -2.38 -0.02 1.30 16 17 C -0.10 -1.41 5.70 30.37 0.17 -1.24 16 18 C -0.14 -1.80 5.43 30.72 0.17 -1.63 16 19 C 0.11 1.47 3.43 30.71 0.11 1.57 16 20 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 21 O -0.59 -8.56 13.28 -148.98 -1.98 -10.54 16 22 C -0.10 -1.53 5.34 30.42 0.16 -1.37 16 23 C -0.09 -1.52 2.47 -10.32 -0.03 -1.54 16 24 H 0.09 1.51 8.07 -2.39 -0.02 1.49 16 25 C 0.05 0.97 6.35 85.91 0.55 1.52 16 26 H 0.26 15.32 8.31 -92.70 -0.77 14.55 16 27 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 28 H -0.01 -0.64 8.14 -2.39 -0.02 -0.65 16 29 H 0.05 2.14 8.14 -2.39 -0.02 2.13 16 30 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.05 1.92 6.36 -2.38 -0.02 1.90 16 32 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.08 2.16 8.14 -2.39 -0.02 2.15 16 34 H 0.03 0.91 8.02 -2.38 -0.02 0.89 16 35 H 0.08 1.83 8.08 -2.39 -0.02 1.82 16 36 H 0.05 1.41 5.93 -2.39 -0.01 1.39 16 37 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.08 1.01 8.06 -2.39 -0.02 0.99 16 39 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.08 0.73 8.14 -2.39 -0.02 0.72 16 41 H 0.39 2.32 9.07 -74.05 -0.67 1.64 16 42 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 43 H 0.06 1.10 7.99 -2.39 -0.02 1.08 16 44 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.05 0.99 7.77 -2.39 -0.02 0.97 16 Total: -1.00 -67.83 345.26 -0.94 -68.77 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: 0.26 Total: 9.84 kcal Atomic # 6 Polarization: -41.82 SS G_CDS: 3.19 Total: -38.64 kcal Atomic # 7 Polarization: -72.16 SS G_CDS: -4.44 Total: -76.60 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: -1.98 Total: -10.54 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.16 kcal Total: -67.83 -0.94 -68.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398772745.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.316 kcal (2) G-P(sol) polarization free energy of solvation -67.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds