Wall clock time and date at job start Mon Mar 30 2020 07:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42900 * 110.05713 * 2 1 4 4 C 1.54262 * 110.03265 * 238.57752 * 2 1 3 5 5 C 1.54887 * 104.19718 * 217.10518 * 4 2 1 6 6 C 1.54894 * 102.74691 * 37.94746 * 5 4 2 7 7 C 1.53878 * 110.02826 * 121.41350 * 2 1 3 8 8 H 1.09002 * 110.06817 * 238.58625 * 7 2 1 9 9 N 1.46890 * 110.03508 * 359.97438 * 7 2 1 10 10 C 1.46851 * 111.00312 * 279.25868 * 9 7 2 11 11 C 1.53036 * 109.52603 * 174.15878 * 10 9 7 12 12 C 1.53122 * 109.27728 * 59.18371 * 11 10 9 13 13 C 1.52994 * 109.52181 * 182.37777 * 12 11 10 14 14 C 1.50706 * 109.46960 * 184.87217 * 13 12 11 15 15 H 1.07997 * 120.00136 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99938 * 179.97438 * 14 13 12 17 17 N 1.31507 * 119.99988 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 120.00069 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.47290 * 89.99950 * 18 16 14 20 20 H 1.48497 * 109.47442 * 210.00238 * 18 16 14 21 21 H 1.48502 * 109.47007 * 330.00289 * 18 16 14 22 22 C 1.53123 * 109.15699 * 302.34272 * 12 11 10 23 23 C 1.46847 * 111.00094 * 155.04963 * 9 7 2 24 24 H 1.09008 * 109.47311 * 308.86933 * 1 2 3 25 25 H 1.09001 * 109.47095 * 68.86469 * 1 2 3 26 26 H 1.08993 * 109.47351 * 188.86949 * 1 2 3 27 27 H 0.96699 * 113.99738 * 301.41270 * 3 2 1 28 28 H 1.09005 * 110.48246 * 98.42783 * 4 2 1 29 29 H 1.08998 * 110.48635 * 335.78772 * 4 2 1 30 30 H 1.08994 * 110.75889 * 279.62617 * 5 4 2 31 31 H 1.09009 * 110.91262 * 156.32926 * 5 4 2 32 32 H 1.09000 * 110.48305 * 203.37923 * 6 5 4 33 33 H 1.08994 * 110.59934 * 80.79118 * 6 5 4 34 34 H 1.09000 * 109.45923 * 54.14259 * 10 9 7 35 35 H 1.09005 * 109.45261 * 294.17311 * 10 9 7 36 36 H 1.09000 * 109.50681 * 299.23963 * 11 10 9 37 37 H 1.09004 * 109.53227 * 179.14305 * 11 10 9 38 38 H 1.08998 * 109.52333 * 62.24477 * 12 11 10 39 39 H 1.09010 * 109.47110 * 304.87111 * 13 12 11 40 40 H 1.08997 * 109.47698 * 64.86827 * 13 12 11 41 41 H 0.97006 * 119.99858 * 179.97438 * 17 16 14 42 42 H 1.08997 * 109.49939 * 177.59777 * 22 12 11 43 43 H 1.08994 * 109.50329 * 297.71167 * 22 12 11 44 44 H 1.08996 * 109.46215 * 305.85372 * 23 9 7 45 45 H 1.09004 * 109.46342 * 65.83594 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0201 1.3423 0.0000 4 6 2.0584 -0.7556 -1.2367 5 6 3.3136 -1.5008 -0.7190 6 6 2.8873 -1.9407 0.7037 7 6 2.0570 -0.7535 1.2338 8 1 2.6865 -0.0957 1.8332 9 7 0.9328 -1.2458 2.0410 10 6 0.3886 -0.1793 2.8912 11 6 -0.8664 -0.6853 3.6061 12 6 -0.5062 -1.9071 4.4558 13 6 -1.7681 -2.4535 5.1265 14 6 -1.3956 -3.5804 6.0552 15 1 -0.3623 -3.8775 6.1565 16 6 -2.3741 -4.2321 6.7754 17 7 -2.0492 -5.2158 7.5855 18 14 -4.1614 -3.7178 6.6007 19 1 -4.7961 -4.4969 5.5073 20 1 -4.8784 -3.9783 7.8747 21 1 -4.2307 -2.2693 6.2809 22 6 0.1029 -2.9844 3.5540 23 6 1.3298 -2.4117 2.8406 24 1 -0.3634 0.6449 0.8002 25 1 -0.3633 0.3706 -0.9585 26 1 -0.3634 -1.0153 0.1584 27 1 1.7224 1.8697 -0.7539 28 1 2.3297 -0.0537 -2.0254 29 1 1.3142 -1.4661 -1.5965 30 1 4.1709 -0.8292 -0.6751 31 1 3.5356 -2.3679 -1.3411 32 1 3.7636 -2.1037 1.3311 33 1 2.2777 -2.8431 0.6595 34 1 0.1327 0.6821 2.2742 35 1 1.1349 0.1123 3.6303 36 1 -1.6183 -0.9642 2.8679 37 1 -1.2618 0.1013 4.2489 38 1 0.2168 -1.6196 5.2192 39 1 -2.2506 -1.6584 5.6951 40 1 -2.4541 -2.8226 4.3641 41 1 -2.7376 -5.6741 8.0925 42 1 0.4007 -3.8402 4.1597 43 1 -0.6337 -3.2995 2.8150 44 1 1.7574 -3.1718 2.1869 45 1 2.0715 -2.1095 3.5800 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399728727.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:52 Heat of formation + Delta-G solvation = -78.714843 kcal Electronic energy + Delta-G solvation = -21840.930369 eV Core-core repulsion = 18856.646453 eV Total energy + Delta-G solvation = -2984.283917 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.22057 -39.01025 -36.36575 -35.24941 -33.94155 -32.27448 -30.81134 -30.38912 -27.97512 -26.20247 -24.84513 -24.18766 -22.27351 -21.51184 -20.58914 -20.05552 -18.85595 -17.54139 -17.27355 -16.63348 -16.34216 -15.85424 -15.63442 -15.26663 -14.94508 -14.69191 -14.42978 -14.23603 -13.96797 -13.78749 -13.37810 -13.27060 -13.09619 -12.64348 -12.49843 -12.44904 -12.28610 -12.16311 -11.98519 -11.94685 -11.76626 -11.64796 -11.57101 -11.43935 -11.22054 -10.84638 -10.80304 -10.70290 -10.58328 -9.20151 -8.26006 -6.28167 1.36084 1.37693 1.49712 2.38067 2.77879 3.09525 3.40803 3.57687 3.81794 3.98558 4.02556 4.04460 4.08635 4.31364 4.38415 4.40712 4.48040 4.54040 4.56753 4.63216 4.74660 4.78195 4.79993 4.85918 4.94271 4.99667 5.04440 5.08852 5.12203 5.16368 5.22019 5.23561 5.26900 5.36852 5.42099 5.43850 5.52693 5.62661 5.71723 5.75119 6.16550 6.23886 6.34719 6.78933 6.97788 7.35653 8.90802 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.035487 B = 0.004350 C = 0.004113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.832214 B = 6435.266296 C = 6806.601904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.133 3.867 3 O -0.579 6.579 4 C -0.140 4.140 5 C -0.116 4.116 6 C -0.126 4.126 7 C 0.087 3.913 8 H 0.035 0.965 9 N -0.520 5.520 10 C 0.058 3.942 11 C -0.104 4.104 12 C -0.071 4.071 13 C -0.004 4.004 14 C -0.519 4.519 15 H 0.033 0.967 16 C 0.003 3.997 17 N -0.954 5.954 18 Si 0.948 3.052 19 H -0.267 1.267 20 H -0.286 1.286 21 H -0.249 1.249 22 C -0.094 4.094 23 C 0.058 3.942 24 H 0.057 0.943 25 H 0.060 0.940 26 H 0.073 0.927 27 H 0.390 0.610 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.017 0.983 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.038 0.962 39 H 0.014 0.986 40 H 0.017 0.983 41 H 0.264 0.736 42 H 0.045 0.955 43 H 0.061 0.939 44 H 0.094 0.906 45 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.308 12.041 -20.656 25.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.093 3.907 3 O -0.387 6.387 4 C -0.177 4.177 5 C -0.154 4.154 6 C -0.164 4.164 7 C -0.022 4.022 8 H 0.053 0.947 9 N -0.245 5.245 10 C -0.069 4.069 11 C -0.142 4.142 12 C -0.090 4.090 13 C -0.042 4.042 14 C -0.557 4.557 15 H 0.051 0.949 16 C -0.194 4.194 17 N -0.595 5.595 18 Si 0.771 3.229 19 H -0.192 1.192 20 H -0.212 1.212 21 H -0.172 1.172 22 C -0.132 4.132 23 C -0.069 4.069 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.092 0.908 27 H 0.240 0.760 28 H 0.102 0.898 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.085 0.915 33 H 0.101 0.899 34 H 0.111 0.889 35 H 0.035 0.965 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.056 0.944 39 H 0.032 0.968 40 H 0.035 0.965 41 H 0.073 0.927 42 H 0.064 0.936 43 H 0.080 0.920 44 H 0.112 0.888 45 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 7.154 11.581 -20.303 24.444 hybrid contribution -0.284 0.118 0.946 0.994 sum 6.871 11.699 -19.357 23.639 Atomic orbital electron populations 1.22430 0.94548 1.03679 1.01274 1.21739 0.93318 0.81723 0.93945 1.86504 1.76095 1.23905 1.52216 1.22991 0.97928 1.00000 0.96817 1.22400 0.97612 1.00338 0.95060 1.22647 0.98847 0.97501 0.97407 1.22185 0.90428 0.95684 0.93877 0.94715 1.62085 1.31311 1.06686 1.24384 1.22265 0.95703 0.94275 0.94664 1.21611 0.97470 0.96872 0.98253 1.20974 0.96861 0.95230 0.95946 1.19557 0.95121 0.94685 0.94805 1.21464 0.94138 1.16337 1.23736 0.94880 1.25984 1.04110 0.94692 0.94566 1.70073 1.35260 1.24785 1.29431 0.85694 0.79259 0.80246 0.77659 1.19195 1.21203 1.17217 1.21412 0.97018 0.97391 0.97336 1.22200 0.95923 0.93543 0.95230 0.92471 0.92082 0.90848 0.75999 0.89794 0.90202 0.91501 0.89986 0.91502 0.89921 0.88924 0.96474 0.91141 0.91529 0.94364 0.96797 0.96478 0.92698 0.93589 0.91979 0.88802 0.96365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.12 7.52 71.98 0.54 -2.58 16 2 C 0.13 2.57 1.24 -10.07 -0.01 2.56 16 3 O -0.58 -11.14 12.90 -148.98 -1.92 -13.07 16 4 C -0.14 -2.11 6.09 31.67 0.19 -1.92 16 5 C -0.12 -1.84 6.91 31.89 0.22 -1.62 16 6 C -0.13 -2.53 5.15 31.67 0.16 -2.36 16 7 C 0.09 2.05 2.63 45.64 0.12 2.17 16 8 H 0.03 0.96 7.78 -2.39 -0.02 0.94 16 9 N -0.52 -13.93 2.93 -866.87 -2.54 -16.47 16 10 C 0.06 1.64 4.71 86.32 0.41 2.05 16 11 C -0.10 -3.32 5.38 30.65 0.16 -3.16 16 12 C -0.07 -2.85 2.20 -10.71 -0.02 -2.88 16 13 C 0.00 -0.21 3.52 29.85 0.11 -0.10 16 14 C -0.52 -30.24 9.00 25.60 0.23 -30.00 16 15 H 0.03 2.12 7.32 -2.91 -0.02 2.10 16 16 C 0.00 0.15 5.47 84.66 0.46 0.61 16 17 N -0.95 -60.81 13.96 21.45 0.30 -60.51 16 18 Si 0.95 45.15 27.47 68.60 1.88 47.04 16 19 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 20 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 21 H -0.25 -11.05 6.54 99.48 0.65 -10.40 16 22 C -0.09 -3.51 5.15 30.65 0.16 -3.35 16 23 C 0.06 1.76 4.92 86.33 0.42 2.18 16 24 H 0.06 1.21 5.34 -2.38 -0.01 1.20 16 25 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.07 1.65 7.31 -2.39 -0.02 1.63 16 27 H 0.39 4.21 9.07 -74.06 -0.67 3.54 16 28 H 0.08 1.00 8.06 -2.38 -0.02 0.98 16 29 H 0.08 1.18 7.85 -2.39 -0.02 1.16 16 30 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 32 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.08 1.70 6.24 -2.39 -0.01 1.69 16 34 H 0.09 2.35 5.30 -2.39 -0.01 2.34 16 35 H 0.02 0.52 8.14 -2.38 -0.02 0.50 16 36 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 38 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.01 0.65 7.20 -2.38 -0.02 0.64 16 40 H 0.02 0.79 7.57 -2.39 -0.02 0.77 16 41 H 0.26 15.74 8.31 -92.70 -0.77 14.97 16 42 H 0.05 1.98 7.05 -2.39 -0.02 1.96 16 43 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 44 H 0.09 2.49 5.52 -2.39 -0.01 2.47 16 45 H 0.02 0.58 8.14 -2.38 -0.02 0.56 16 Total: -1.00 -67.26 329.23 1.10 -66.16 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: 0.23 Total: 15.25 kcal Atomic # 6 Polarization: -41.55 SS G_CDS: 3.15 Total: -38.40 kcal Atomic # 7 Polarization: -74.74 SS G_CDS: -2.24 Total: -76.99 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: -1.92 Total: -13.07 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.88 Total: 47.04 kcal Total: -67.26 1.10 -66.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399728727.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.554 kcal (2) G-P(sol) polarization free energy of solvation -67.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds