Wall clock time and date at job start Mon Mar 30 2020 07:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42901 * 110.01884 * 2 1 4 4 C 1.54476 * 109.89666 * 238.58794 * 2 1 3 5 5 C 1.54887 * 104.09894 * 264.07752 * 4 2 1 6 6 C 1.54886 * 102.91610 * 322.30217 * 5 4 2 7 7 C 1.53868 * 110.03629 * 121.39621 * 2 1 3 8 8 H 1.09006 * 110.07155 * 0.02732 * 7 2 1 9 9 N 1.46899 * 110.03317 * 238.61491 * 7 2 1 10 10 C 1.46845 * 111.00291 * 298.87841 * 9 7 2 11 11 C 1.53033 * 109.52220 * 185.83726 * 10 9 7 12 12 C 1.53114 * 109.28057 * 300.81705 * 11 10 9 13 13 C 1.53001 * 109.52667 * 177.55727 * 12 11 10 14 14 C 1.50702 * 109.46921 * 65.31743 * 13 12 11 15 15 H 1.08004 * 119.99523 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00454 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99606 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00092 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46889 * 60.00929 * 18 16 14 20 20 H 1.48501 * 109.46852 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47701 * 300.00485 * 18 16 14 22 22 C 1.53129 * 109.15898 * 57.65805 * 12 11 10 23 23 C 1.46855 * 110.99664 * 63.08655 * 9 7 2 24 24 H 1.08991 * 109.47032 * 298.60411 * 1 2 3 25 25 H 1.09002 * 109.47372 * 58.60350 * 1 2 3 26 26 H 1.09002 * 109.47055 * 178.60489 * 1 2 3 27 27 H 0.96698 * 114.00148 * 301.40306 * 3 2 1 28 28 H 1.08997 * 110.39953 * 145.49342 * 4 2 1 29 29 H 1.09006 * 110.66072 * 22.79254 * 4 2 1 30 30 H 1.09005 * 110.75372 * 203.89356 * 5 4 2 31 31 H 1.08999 * 110.75277 * 80.70850 * 5 4 2 32 32 H 1.09001 * 110.48480 * 156.53124 * 6 5 4 33 33 H 1.09002 * 110.48329 * 279.03970 * 6 5 4 34 34 H 1.08995 * 109.45921 * 305.85080 * 10 9 7 35 35 H 1.08997 * 109.46237 * 65.82340 * 10 9 7 36 36 H 1.09001 * 109.50233 * 180.87651 * 11 10 9 37 37 H 1.09008 * 109.50421 * 60.76212 * 11 10 9 38 38 H 1.08995 * 109.57865 * 297.71951 * 12 11 10 39 39 H 1.08997 * 109.47691 * 185.31545 * 13 12 11 40 40 H 1.08996 * 109.47473 * 305.32362 * 13 12 11 41 41 H 0.97004 * 119.99703 * 180.02562 * 17 16 14 42 42 H 1.08999 * 109.50326 * 182.40644 * 22 12 11 43 43 H 1.08996 * 109.53319 * 62.30414 * 22 12 11 44 44 H 1.08994 * 109.46092 * 294.17925 * 23 9 7 45 45 H 1.09003 * 109.46267 * 54.15553 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0192 1.3427 0.0000 4 6 2.0557 -0.7571 -1.2397 5 6 2.3299 -2.1897 -0.7187 6 6 2.8885 -1.9396 0.7041 7 6 2.0572 -0.7531 1.2339 8 1 1.2235 -1.1193 1.8331 9 7 2.9048 0.1346 2.0410 10 6 4.0691 0.5927 1.2723 11 6 5.0013 1.3932 2.1845 12 6 4.2409 2.5923 2.7576 13 6 5.1493 3.3624 3.7181 14 6 6.3005 3.9596 2.9505 15 1 6.3763 3.8057 1.8842 16 6 7.2564 4.7035 3.6093 17 7 7.1638 4.8913 4.9077 18 14 8.6837 5.4431 2.6579 19 1 8.1606 6.3687 1.6211 20 1 9.5654 6.1907 3.5901 21 1 9.4599 4.3577 2.0064 22 6 3.0066 2.0905 3.5123 23 6 2.1322 1.2698 2.5617 24 1 -0.3633 0.4920 0.9022 25 1 -0.3634 0.5354 -0.8772 26 1 -0.3633 -1.0274 -0.0250 27 1 1.7214 1.8698 -0.7540 28 1 2.9766 -0.3000 -1.6017 29 1 1.3024 -0.7751 -2.0274 30 1 3.0700 -2.6922 -1.3415 31 1 1.4070 -2.7680 -0.6752 32 1 2.7416 -2.8188 1.3316 33 1 3.9455 -1.6772 0.6582 34 1 4.6034 -0.2698 0.8740 35 1 3.7352 1.2248 0.4496 36 1 5.8577 1.7463 1.6100 37 1 5.3466 0.7577 3.0000 38 1 3.9292 3.2491 1.9456 39 1 4.5799 4.1589 4.1970 40 1 5.5336 2.6826 4.4786 41 1 7.8361 5.4150 5.3711 42 1 2.4378 2.9417 3.8864 43 1 3.3200 1.4661 4.3490 44 1 1.8074 1.8986 1.7328 45 1 1.2598 0.8991 3.0998 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399729487.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:55 Heat of formation + Delta-G solvation = -54.834778 kcal Electronic energy + Delta-G solvation = -22155.391123 eV Core-core repulsion = 19172.142724 eV Total energy + Delta-G solvation = -2983.248400 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.40095 -37.22719 -35.23588 -33.69512 -31.92401 -30.64448 -29.75466 -28.50495 -26.66638 -24.95807 -23.24392 -22.60032 -20.76385 -20.64392 -19.47355 -18.64190 -17.07491 -16.14238 -15.75219 -15.36131 -14.61673 -14.60972 -14.39750 -13.92001 -13.42695 -13.20147 -13.00462 -12.85249 -12.70710 -12.24212 -11.86017 -11.73079 -11.62706 -11.48329 -11.21365 -11.13217 -10.94717 -10.82685 -10.69647 -10.60085 -10.50170 -10.37334 -10.10215 -9.75398 -9.46784 -9.25413 -8.83940 -8.71673 -8.22484 -7.57365 -5.87980 -3.88659 3.39504 3.43657 3.46158 3.89903 4.36809 4.41383 4.55143 4.69257 4.77383 5.03631 5.11424 5.21023 5.35791 5.46589 5.48067 5.55765 5.61566 5.67729 5.70258 5.77893 5.81996 5.86512 5.92594 6.07467 6.07757 6.15672 6.21661 6.32068 6.39589 6.55355 6.69000 6.80501 6.87454 6.91337 7.20399 7.34494 7.40097 7.54906 7.71775 7.73341 7.82907 8.02352 8.14920 8.58535 9.18125 9.73966 11.23521 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.031363 B = 0.004586 C = 0.004408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.555307 B = 6103.988745 C = 6351.048838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.090 3.910 3 O -0.529 6.529 4 C -0.149 4.149 5 C -0.122 4.122 6 C -0.125 4.125 7 C 0.096 3.904 8 H 0.083 0.917 9 N -0.519 5.519 10 C 0.038 3.962 11 C -0.098 4.098 12 C -0.075 4.075 13 C 0.027 3.973 14 C -0.510 4.510 15 H 0.054 0.946 16 C 0.055 3.945 17 N -0.898 5.898 18 Si 0.888 3.112 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.278 1.278 22 C -0.111 4.111 23 C 0.050 3.950 24 H 0.062 0.938 25 H 0.054 0.946 26 H 0.063 0.937 27 H 0.359 0.641 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.055 0.945 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.053 0.947 38 H 0.051 0.949 39 H 0.012 0.988 40 H 0.014 0.986 41 H 0.259 0.741 42 H 0.053 0.947 43 H 0.057 0.943 44 H 0.070 0.930 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.725 -12.954 -11.792 22.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.047 3.953 3 O -0.336 6.336 4 C -0.187 4.187 5 C -0.160 4.160 6 C -0.163 4.163 7 C -0.014 4.014 8 H 0.101 0.899 9 N -0.242 5.242 10 C -0.088 4.088 11 C -0.136 4.136 12 C -0.094 4.094 13 C -0.010 4.010 14 C -0.549 4.549 15 H 0.072 0.928 16 C -0.145 4.145 17 N -0.538 5.538 18 Si 0.716 3.284 19 H -0.204 1.204 20 H -0.214 1.214 21 H -0.204 1.204 22 C -0.148 4.148 23 C -0.077 4.077 24 H 0.081 0.919 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.208 0.792 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.102 0.898 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.030 0.970 40 H 0.033 0.967 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.075 0.925 44 H 0.087 0.913 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -13.169 -13.326 -10.662 21.557 hybrid contribution 0.192 1.029 -1.606 1.917 sum -12.977 -12.297 -12.268 21.683 Atomic orbital electron populations 1.22485 0.95813 1.02288 1.02268 1.22886 0.92608 0.83178 0.96585 1.86984 1.73930 1.23004 1.49633 1.23112 1.01520 0.96638 0.97430 1.22393 1.00789 0.96118 0.96709 1.22607 1.01062 0.97380 0.95222 1.22461 0.95553 0.92907 0.90520 0.89888 1.62018 1.07950 1.18565 1.35636 1.22668 0.91208 0.98232 0.96733 1.21514 0.97298 0.96196 0.98576 1.21143 0.94272 0.95728 0.98214 1.19130 0.93401 0.94454 0.94032 1.21245 1.08051 1.31251 0.94309 0.92815 1.25016 0.98074 0.96650 0.94808 1.69966 1.35409 1.40680 1.07729 0.86729 0.82623 0.79315 0.79730 1.20403 1.21432 1.20350 1.21663 0.97065 0.98031 0.98085 1.22353 0.94990 0.91974 0.98394 0.91858 0.92673 0.91794 0.79212 0.90618 0.91793 0.91431 0.91659 0.91286 0.89811 0.92678 0.90811 0.91570 0.92804 0.93048 0.97005 0.96748 0.93163 0.92785 0.92456 0.91258 0.93458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.48 8.47 37.16 0.31 -1.17 16 2 C 0.09 0.92 0.87 -89.39 -0.08 0.84 16 3 O -0.53 -6.24 6.05 -35.23 -0.21 -6.45 16 4 C -0.15 -1.35 6.11 -24.96 -0.15 -1.50 16 5 C -0.12 -1.06 6.90 -24.74 -0.17 -1.24 16 6 C -0.13 -1.36 6.30 -25.07 -0.16 -1.51 16 7 C 0.10 1.16 2.70 -66.60 -0.18 0.98 16 8 H 0.08 0.99 7.67 -51.93 -0.40 0.59 16 9 N -0.52 -8.01 4.70 -225.36 -1.06 -9.07 16 10 C 0.04 0.63 4.80 -3.84 -0.02 0.61 16 11 C -0.10 -1.99 5.15 -26.66 -0.14 -2.12 16 12 C -0.07 -1.63 2.20 -90.49 -0.20 -1.83 16 13 C 0.03 0.72 4.45 -27.88 -0.12 0.60 16 14 C -0.51 -14.73 8.44 -34.44 -0.29 -15.02 16 15 H 0.05 1.51 7.08 -52.48 -0.37 1.14 16 16 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -27.76 13.29 55.43 0.74 -27.02 16 18 Si 0.89 22.18 29.54 -169.99 -5.02 17.16 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 C -0.11 -2.10 5.38 -26.65 -0.14 -2.25 16 23 C 0.05 0.80 5.05 -3.83 -0.02 0.78 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.36 3.08 9.07 49.18 0.45 3.53 16 28 H 0.08 0.76 8.08 -51.93 -0.42 0.34 16 29 H 0.06 0.50 7.85 -51.93 -0.41 0.09 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.08 1.03 5.40 -51.93 -0.28 0.75 16 34 H 0.06 0.86 5.57 -51.93 -0.29 0.57 16 35 H 0.07 1.23 5.00 -48.56 -0.24 0.99 16 36 H 0.07 1.42 7.05 -51.93 -0.37 1.06 16 37 H 0.05 1.15 8.14 -51.92 -0.42 0.73 16 38 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 42 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 43 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.07 1.11 5.19 -51.93 -0.27 0.84 16 45 H 0.05 0.71 8.12 -51.93 -0.42 0.28 16 LS Contribution 329.28 15.07 4.96 4.96 Total: -1.00 -31.22 329.28 -9.28 -40.49 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -7.23 Total: 1.23 kcal Atomic # 6 Polarization: -19.85 SS G_CDS: -1.45 Total: -21.31 kcal Atomic # 7 Polarization: -35.77 SS G_CDS: -0.32 Total: -36.09 kcal Atomic # 8 Polarization: -6.24 SS G_CDS: -0.21 Total: -6.45 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.22 -9.28 -40.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399729487.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.342 kcal (2) G-P(sol) polarization free energy of solvation -31.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds