Wall clock time and date at job start Mon Mar 30 2020 07:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42901 * 110.01884 * 2 1 4 4 C 1.54476 * 109.89666 * 238.58794 * 2 1 3 5 5 C 1.54887 * 104.09894 * 264.07752 * 4 2 1 6 6 C 1.54886 * 102.91610 * 322.30217 * 5 4 2 7 7 C 1.53868 * 110.03629 * 121.39621 * 2 1 3 8 8 H 1.09006 * 110.07155 * 0.02732 * 7 2 1 9 9 N 1.46899 * 110.03317 * 238.61491 * 7 2 1 10 10 C 1.46845 * 111.00291 * 298.87841 * 9 7 2 11 11 C 1.53033 * 109.52220 * 185.83726 * 10 9 7 12 12 C 1.53114 * 109.28057 * 300.81705 * 11 10 9 13 13 C 1.53001 * 109.52667 * 177.55727 * 12 11 10 14 14 C 1.50702 * 109.46921 * 65.31743 * 13 12 11 15 15 H 1.08004 * 119.99523 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00454 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99606 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00092 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46889 * 60.00929 * 18 16 14 20 20 H 1.48501 * 109.46852 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47701 * 300.00485 * 18 16 14 22 22 C 1.53129 * 109.15898 * 57.65805 * 12 11 10 23 23 C 1.46855 * 110.99664 * 63.08655 * 9 7 2 24 24 H 1.08991 * 109.47032 * 298.60411 * 1 2 3 25 25 H 1.09002 * 109.47372 * 58.60350 * 1 2 3 26 26 H 1.09002 * 109.47055 * 178.60489 * 1 2 3 27 27 H 0.96698 * 114.00148 * 301.40306 * 3 2 1 28 28 H 1.08997 * 110.39953 * 145.49342 * 4 2 1 29 29 H 1.09006 * 110.66072 * 22.79254 * 4 2 1 30 30 H 1.09005 * 110.75372 * 203.89356 * 5 4 2 31 31 H 1.08999 * 110.75277 * 80.70850 * 5 4 2 32 32 H 1.09001 * 110.48480 * 156.53124 * 6 5 4 33 33 H 1.09002 * 110.48329 * 279.03970 * 6 5 4 34 34 H 1.08995 * 109.45921 * 305.85080 * 10 9 7 35 35 H 1.08997 * 109.46237 * 65.82340 * 10 9 7 36 36 H 1.09001 * 109.50233 * 180.87651 * 11 10 9 37 37 H 1.09008 * 109.50421 * 60.76212 * 11 10 9 38 38 H 1.08995 * 109.57865 * 297.71951 * 12 11 10 39 39 H 1.08997 * 109.47691 * 185.31545 * 13 12 11 40 40 H 1.08996 * 109.47473 * 305.32362 * 13 12 11 41 41 H 0.97004 * 119.99703 * 180.02562 * 17 16 14 42 42 H 1.08999 * 109.50326 * 182.40644 * 22 12 11 43 43 H 1.08996 * 109.53319 * 62.30414 * 22 12 11 44 44 H 1.08994 * 109.46092 * 294.17925 * 23 9 7 45 45 H 1.09003 * 109.46267 * 54.15553 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0192 1.3427 0.0000 4 6 2.0557 -0.7571 -1.2397 5 6 2.3299 -2.1897 -0.7187 6 6 2.8885 -1.9396 0.7041 7 6 2.0572 -0.7531 1.2339 8 1 1.2235 -1.1193 1.8331 9 7 2.9048 0.1346 2.0410 10 6 4.0691 0.5927 1.2723 11 6 5.0013 1.3932 2.1845 12 6 4.2409 2.5923 2.7576 13 6 5.1493 3.3624 3.7181 14 6 6.3005 3.9596 2.9505 15 1 6.3763 3.8057 1.8842 16 6 7.2564 4.7035 3.6093 17 7 7.1638 4.8913 4.9077 18 14 8.6837 5.4431 2.6579 19 1 8.1606 6.3687 1.6211 20 1 9.5654 6.1907 3.5901 21 1 9.4599 4.3577 2.0064 22 6 3.0066 2.0905 3.5123 23 6 2.1322 1.2698 2.5617 24 1 -0.3633 0.4920 0.9022 25 1 -0.3634 0.5354 -0.8772 26 1 -0.3633 -1.0274 -0.0250 27 1 1.7214 1.8698 -0.7540 28 1 2.9766 -0.3000 -1.6017 29 1 1.3024 -0.7751 -2.0274 30 1 3.0700 -2.6922 -1.3415 31 1 1.4070 -2.7680 -0.6752 32 1 2.7416 -2.8188 1.3316 33 1 3.9455 -1.6772 0.6582 34 1 4.6034 -0.2698 0.8740 35 1 3.7352 1.2248 0.4496 36 1 5.8577 1.7463 1.6100 37 1 5.3466 0.7577 3.0000 38 1 3.9292 3.2491 1.9456 39 1 4.5799 4.1589 4.1970 40 1 5.5336 2.6826 4.4786 41 1 7.8361 5.4150 5.3711 42 1 2.4378 2.9417 3.8864 43 1 3.3200 1.4661 4.3490 44 1 1.8074 1.8986 1.7328 45 1 1.2598 0.8991 3.0998 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399729487.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:55 Heat of formation + Delta-G solvation = -75.142269 kcal Electronic energy + Delta-G solvation = -22156.271722 eV Core-core repulsion = 19172.142724 eV Total energy + Delta-G solvation = -2984.128998 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.39689 -38.62049 -36.13160 -35.44574 -33.78703 -31.80035 -30.80068 -30.07002 -27.97583 -26.16003 -24.84389 -24.01277 -22.35645 -21.48645 -20.68448 -20.06843 -18.40212 -17.98989 -16.82471 -16.52037 -16.24772 -15.72989 -15.49770 -15.04306 -14.96726 -14.54031 -14.40571 -14.05153 -13.84533 -13.57455 -13.32369 -13.18604 -13.05283 -12.64212 -12.58019 -12.48501 -12.31124 -12.14959 -11.96913 -11.88397 -11.79779 -11.63780 -11.54327 -11.40139 -11.15226 -10.74832 -10.61386 -10.49473 -10.36344 -8.75051 -8.15650 -6.25607 1.39099 1.42865 1.50490 2.42869 2.95275 3.16828 3.53292 3.64138 3.76243 4.00723 4.17069 4.19677 4.26587 4.33602 4.42609 4.47867 4.55833 4.61301 4.72680 4.80004 4.86440 4.90552 4.93067 4.97885 5.02142 5.07476 5.12071 5.15047 5.21421 5.27812 5.29506 5.35411 5.41400 5.47721 5.50933 5.55054 5.55785 5.71865 5.86163 5.95089 6.31130 6.43067 6.48259 6.90068 6.94474 7.42434 8.96397 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.031363 B = 0.004586 C = 0.004408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.555307 B = 6103.988745 C = 6351.048838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.092 3.908 3 O -0.552 6.552 4 C -0.144 4.144 5 C -0.115 4.115 6 C -0.126 4.126 7 C 0.089 3.911 8 H 0.089 0.911 9 N -0.532 5.532 10 C 0.052 3.948 11 C -0.093 4.093 12 C -0.065 4.065 13 C 0.033 3.967 14 C -0.528 4.528 15 H 0.059 0.941 16 C -0.003 4.003 17 N -0.937 5.937 18 Si 0.963 3.037 19 H -0.266 1.266 20 H -0.284 1.284 21 H -0.267 1.267 22 C -0.107 4.107 23 C 0.061 3.939 24 H 0.052 0.948 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.375 0.625 28 H 0.064 0.936 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.048 0.952 37 H 0.034 0.966 38 H 0.047 0.953 39 H -0.017 1.017 40 H -0.018 1.018 41 H 0.262 0.738 42 H 0.053 0.947 43 H 0.041 0.959 44 H 0.076 0.924 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.715 -13.950 -14.293 24.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.050 3.950 3 O -0.361 6.361 4 C -0.182 4.182 5 C -0.153 4.153 6 C -0.164 4.164 7 C -0.020 4.020 8 H 0.107 0.893 9 N -0.255 5.255 10 C -0.074 4.074 11 C -0.131 4.131 12 C -0.083 4.083 13 C -0.004 4.004 14 C -0.566 4.566 15 H 0.077 0.923 16 C -0.200 4.200 17 N -0.578 5.578 18 Si 0.787 3.213 19 H -0.191 1.191 20 H -0.209 1.209 21 H -0.192 1.192 22 C -0.145 4.145 23 C -0.067 4.067 24 H 0.071 0.929 25 H 0.087 0.913 26 H 0.094 0.906 27 H 0.226 0.774 28 H 0.082 0.918 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.067 0.933 37 H 0.052 0.948 38 H 0.066 0.934 39 H 0.001 0.999 40 H 0.000 1.000 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.060 0.940 44 H 0.094 0.906 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.181 -14.335 -13.186 24.093 hybrid contribution 0.480 1.327 -0.768 1.607 sum -13.701 -13.008 -13.954 23.487 Atomic orbital electron populations 1.22425 0.94285 1.03181 1.02415 1.22822 0.93639 0.82488 0.96034 1.86842 1.74522 1.23921 1.50813 1.23064 1.01486 0.96379 0.97258 1.22386 1.01629 0.96215 0.95065 1.22597 0.99832 0.97033 0.96913 1.22606 0.95425 0.92785 0.91212 0.89314 1.61941 1.08365 1.18454 1.36779 1.22469 0.91061 0.98176 0.95724 1.21409 0.97562 0.95697 0.98383 1.20963 0.94604 0.95730 0.97021 1.19029 0.93813 0.93392 0.94152 1.21607 1.08793 1.31473 0.94742 0.92250 1.25989 1.01213 0.97037 0.95798 1.70116 1.36633 1.41459 1.09612 0.85539 0.78699 0.78676 0.78369 1.19109 1.20907 1.19217 1.21596 0.96396 0.98354 0.98131 1.22221 0.94501 0.92067 0.97876 0.92912 0.91295 0.90583 0.77438 0.91762 0.89908 0.90689 0.90002 0.90700 0.91578 0.91564 0.90264 0.93293 0.94758 0.93417 0.99898 0.99966 0.92964 0.92818 0.93969 0.90632 0.91902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.32 8.47 71.98 0.61 -1.71 16 2 C 0.09 1.63 0.87 -10.00 -0.01 1.62 16 3 O -0.55 -11.79 6.05 -148.98 -0.90 -12.70 16 4 C -0.14 -2.14 6.11 31.74 0.19 -1.95 16 5 C -0.12 -1.63 6.90 31.88 0.22 -1.41 16 6 C -0.13 -2.46 6.30 31.67 0.20 -2.26 16 7 C 0.09 1.97 2.70 45.64 0.12 2.09 16 8 H 0.09 1.87 7.67 -2.38 -0.02 1.86 16 9 N -0.53 -15.88 4.70 -866.90 -4.07 -19.95 16 10 C 0.05 1.70 4.80 86.32 0.41 2.12 16 11 C -0.09 -3.85 5.15 30.64 0.16 -3.69 16 12 C -0.06 -2.90 2.20 -10.71 -0.02 -2.93 16 13 C 0.03 1.88 4.45 29.85 0.13 2.01 16 14 C -0.53 -31.34 8.44 25.60 0.22 -31.13 16 15 H 0.06 3.38 7.08 -2.91 -0.02 3.36 16 16 C 0.00 -0.21 5.46 84.65 0.46 0.26 16 17 N -0.94 -59.57 13.29 21.45 0.28 -59.28 16 18 Si 0.96 45.85 29.54 68.60 2.03 47.88 16 19 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 20 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 21 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 22 C -0.11 -4.15 5.38 30.65 0.16 -3.99 16 23 C 0.06 1.88 5.05 86.32 0.44 2.32 16 24 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.37 5.50 9.07 -68.12 -0.62 4.88 16 28 H 0.06 1.13 8.08 -2.39 -0.02 1.11 16 29 H 0.08 0.95 7.85 -2.38 -0.02 0.93 16 30 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 31 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.07 1.53 5.40 -2.39 -0.01 1.52 16 34 H 0.07 2.02 5.57 -2.39 -0.01 2.00 16 35 H 0.08 2.55 5.00 -0.25 0.00 2.55 16 36 H 0.05 2.16 7.05 -2.39 -0.02 2.14 16 37 H 0.03 1.52 8.14 -2.38 -0.02 1.50 16 38 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 39 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 40 H -0.02 -1.12 8.14 -2.39 -0.02 -1.14 16 41 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 42 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 43 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.08 2.31 5.19 -2.39 -0.01 2.30 16 45 H 0.06 1.77 8.12 -2.39 -0.02 1.75 16 Total: -1.00 -68.96 329.28 0.98 -67.98 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: 0.35 Total: 14.72 kcal Atomic # 6 Polarization: -41.94 SS G_CDS: 3.30 Total: -38.65 kcal Atomic # 7 Polarization: -75.45 SS G_CDS: -3.79 Total: -79.23 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: -0.90 Total: -12.70 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -68.96 0.98 -67.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399729487.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.161 kcal (2) G-P(sol) polarization free energy of solvation -68.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds