Wall clock time and date at job start Mon Mar 30 2020 07:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42906 * 110.01207 * 2 1 4 4 C 1.53871 * 110.03302 * 121.39036 * 2 1 3 5 5 C 1.54269 * 106.59930 * 119.28889 * 4 2 1 6 6 C 1.54888 * 104.19148 * 23.60748 * 5 4 2 7 7 C 1.54260 * 110.03095 * 238.56201 * 2 1 3 8 8 H 1.08991 * 110.48757 * 335.77815 * 7 2 1 9 9 N 1.46898 * 110.48756 * 98.42490 * 7 2 1 10 10 C 1.46849 * 110.99786 * 168.34779 * 9 7 2 11 11 C 1.53039 * 109.52085 * 185.83719 * 10 9 7 12 12 C 1.53125 * 109.28177 * 300.82608 * 11 10 9 13 13 C 1.52994 * 109.57577 * 177.59517 * 12 11 10 14 14 C 1.50693 * 109.47646 * 65.28016 * 13 12 11 15 15 H 1.07995 * 120.00105 * 0.02562 * 14 13 12 16 16 C 1.37881 * 120.00245 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99830 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00104 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47117 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.46905 * 120.00587 * 18 16 14 21 21 H 1.48497 * 109.47628 * 240.00291 * 18 16 14 22 22 C 1.53111 * 109.16014 * 57.65024 * 12 11 10 23 23 C 1.46846 * 111.00144 * 292.56062 * 9 7 2 24 24 H 1.09008 * 109.47245 * 300.05970 * 1 2 3 25 25 H 1.08991 * 109.47637 * 60.06011 * 1 2 3 26 26 H 1.08996 * 109.47020 * 180.02562 * 1 2 3 27 27 H 0.96700 * 113.99695 * 59.30327 * 3 2 1 28 28 H 1.09004 * 110.03146 * 238.56966 * 4 2 1 29 29 H 1.08994 * 110.03553 * 0.02562 * 4 2 1 30 30 H 1.08996 * 110.48820 * 142.28368 * 5 4 2 31 31 H 1.09001 * 110.48469 * 264.79916 * 5 4 2 32 32 H 1.09001 * 110.76194 * 80.37949 * 6 5 4 33 33 H 1.09008 * 110.75404 * 203.55975 * 6 5 4 34 34 H 1.08996 * 109.46648 * 305.85628 * 10 9 7 35 35 H 1.09004 * 109.46343 * 65.83013 * 10 9 7 36 36 H 1.08997 * 109.50328 * 180.88431 * 11 10 9 37 37 H 1.08997 * 109.50518 * 60.76570 * 11 10 9 38 38 H 1.09006 * 109.52048 * 297.74993 * 12 11 10 39 39 H 1.09001 * 109.47410 * 185.28445 * 13 12 11 40 40 H 1.09002 * 109.46913 * 305.28060 * 13 12 11 41 41 H 0.97001 * 119.99958 * 179.97438 * 17 16 14 42 42 H 1.09000 * 109.50298 * 182.40401 * 22 12 11 43 43 H 1.09002 * 109.50003 * 62.28906 * 22 12 11 44 44 H 1.08997 * 109.46166 * 294.17962 * 23 9 7 45 45 H 1.09002 * 109.46142 * 54.15271 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0190 1.3428 0.0000 4 6 2.0571 -0.7530 1.2340 5 6 2.8875 -1.9403 0.7044 6 6 3.3137 -1.5009 -0.7184 7 6 2.0584 -0.7559 -1.2365 8 1 1.3143 -1.4666 -1.5960 9 7 2.4239 0.1896 -2.2997 10 6 3.1783 -0.4827 -3.3653 11 6 3.6660 0.5546 -4.3793 12 6 2.4599 1.2913 -4.9687 13 6 2.9430 2.3711 -5.9391 14 6 3.6191 1.7208 -7.1184 15 1 3.6963 0.6449 -7.1708 16 6 4.1384 2.4993 -8.1310 17 7 4.0440 3.8095 -8.0673 18 14 4.9772 1.6932 -9.5924 19 1 4.9530 0.2178 -9.4252 20 1 4.2602 2.0614 -10.8397 21 1 6.3847 2.1594 -9.6747 22 6 1.6645 1.9419 -3.8337 23 6 1.2348 0.8644 -2.8355 24 1 -0.3634 0.5148 0.8895 25 1 -0.3634 0.5128 -0.8904 26 1 -0.3633 -1.0276 0.0005 27 1 1.7299 1.8666 0.7596 28 1 2.6867 -0.0945 1.8325 29 1 1.2230 -1.1188 1.8327 30 1 3.7638 -2.1030 1.3318 31 1 2.2779 -2.8428 0.6606 32 1 4.1710 -0.8292 -0.6749 33 1 3.5357 -2.3682 -1.3403 34 1 4.0354 -0.9991 -2.9332 35 1 2.5339 -1.2052 -3.8663 36 1 4.2124 0.0536 -5.1782 37 1 4.3215 1.2694 -3.8820 38 1 1.8241 0.5827 -5.4995 39 1 2.0908 2.9556 -6.2858 40 1 3.6503 3.0263 -5.4306 41 1 4.4097 4.3572 -8.7795 42 1 0.7811 2.4321 -4.2428 43 1 2.2886 2.6786 -3.3277 44 1 0.5995 0.1357 -3.3389 45 1 0.6805 1.3266 -2.0186 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399729488.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:57 Heat of formation + Delta-G solvation = -69.814869 kcal Electronic energy + Delta-G solvation = -21758.863541 eV Core-core repulsion = 18774.965556 eV Total energy + Delta-G solvation = -2983.897985 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.99304 -37.65371 -35.00473 -33.77296 -31.99413 -30.92577 -29.79659 -28.52043 -26.60180 -25.04185 -23.32449 -22.64440 -20.77861 -20.26974 -19.73587 -18.76447 -17.03464 -16.16233 -15.63298 -15.16441 -14.62511 -14.53388 -14.37686 -13.95125 -13.68161 -13.23239 -13.12234 -12.89953 -12.78974 -12.38851 -11.93428 -11.79718 -11.60332 -11.55423 -11.25859 -11.08575 -10.95975 -10.79662 -10.69031 -10.59372 -10.50814 -10.34925 -10.10460 -9.88000 -9.71599 -9.40498 -8.92922 -8.74046 -8.26181 -7.83090 -5.91022 -3.91976 3.35580 3.43020 3.46879 3.99419 4.32229 4.43554 4.49978 4.52879 4.81558 5.03877 5.12953 5.23965 5.33620 5.34730 5.44378 5.51428 5.57340 5.61194 5.67211 5.70953 5.79974 5.83657 5.86783 5.90773 5.97482 6.08731 6.10864 6.16924 6.23754 6.28853 6.45650 6.59659 6.74827 6.82280 7.12088 7.23822 7.32017 7.50865 7.60139 7.79193 7.84575 7.97259 8.11125 8.54460 9.15050 9.71064 11.20444 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.037091 B = 0.004151 C = 0.003911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.712191 B = 6744.394038 C = 7157.603873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.133 3.867 3 O -0.526 6.526 4 C -0.149 4.149 5 C -0.121 4.121 6 C -0.118 4.118 7 C 0.093 3.907 8 H 0.048 0.952 9 N -0.508 5.508 10 C 0.052 3.948 11 C -0.098 4.098 12 C -0.081 4.081 13 C 0.028 3.972 14 C -0.512 4.512 15 H 0.055 0.945 16 C 0.055 3.945 17 N -0.896 5.896 18 Si 0.887 3.113 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.285 1.285 22 C -0.109 4.109 23 C 0.061 3.939 24 H 0.057 0.943 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.362 0.638 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.021 0.979 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.048 0.952 39 H 0.013 0.987 40 H 0.017 0.983 41 H 0.258 0.742 42 H 0.055 0.945 43 H 0.066 0.934 44 H 0.017 0.983 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.024 -10.094 19.350 22.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.092 3.908 3 O -0.329 6.329 4 C -0.188 4.188 5 C -0.159 4.159 6 C -0.155 4.155 7 C -0.016 4.016 8 H 0.066 0.934 9 N -0.232 5.232 10 C -0.075 4.075 11 C -0.135 4.135 12 C -0.100 4.100 13 C -0.009 4.009 14 C -0.550 4.550 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.716 3.284 19 H -0.198 1.198 20 H -0.212 1.212 21 H -0.211 1.211 22 C -0.147 4.147 23 C -0.066 4.066 24 H 0.076 0.924 25 H 0.088 0.912 26 H 0.080 0.920 27 H 0.207 0.793 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.101 0.899 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.040 0.960 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.031 0.969 40 H 0.035 0.965 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.085 0.915 44 H 0.035 0.965 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.398 -9.781 18.886 21.943 hybrid contribution -0.420 -0.853 -0.700 1.181 sum -5.819 -10.635 18.185 21.855 Atomic orbital electron populations 1.22711 0.96221 1.02412 1.02714 1.21777 0.91493 0.83546 0.94032 1.86870 1.75312 1.22048 1.48689 1.22913 0.99867 0.98218 0.97755 1.22247 0.99522 0.97409 0.96747 1.22593 0.98268 0.99454 0.95233 1.22466 0.96063 0.92039 0.91070 0.93413 1.61870 1.22555 1.28349 1.10427 1.22261 0.96939 0.96124 0.92176 1.21520 0.98444 0.97232 0.96348 1.21225 0.95250 0.98474 0.95011 1.19117 0.95997 0.93028 0.92786 1.21310 1.36166 0.92942 1.04577 0.92711 1.25018 0.96441 0.94798 0.98275 1.69981 1.46556 1.03742 1.33355 0.86610 0.79299 0.79597 0.82928 1.19826 1.21171 1.21107 1.21650 0.99837 0.97365 0.95851 1.22176 0.90832 0.96256 0.97348 0.92401 0.91240 0.91953 0.79295 0.90792 0.91612 0.91470 0.91827 0.89883 0.91666 0.91531 0.96041 0.91174 0.91866 0.93346 0.96867 0.96501 0.93222 0.92600 0.91496 0.96474 0.90778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.70 8.28 37.16 0.31 -1.39 16 2 C 0.13 1.43 0.85 -89.51 -0.08 1.35 16 3 O -0.53 -6.46 11.20 -35.23 -0.39 -6.86 16 4 C -0.15 -1.31 6.26 -25.61 -0.16 -1.47 16 5 C -0.12 -1.08 6.83 -25.07 -0.17 -1.25 16 6 C -0.12 -1.33 4.91 -24.74 -0.12 -1.45 16 7 C 0.09 1.18 2.10 -66.06 -0.14 1.04 16 8 H 0.05 0.61 7.85 -51.93 -0.41 0.20 16 9 N -0.51 -7.95 3.87 -224.72 -0.87 -8.82 16 10 C 0.05 0.87 5.22 -3.83 -0.02 0.85 16 11 C -0.10 -1.95 5.15 -26.65 -0.14 -2.08 16 12 C -0.08 -1.74 2.20 -90.50 -0.20 -1.94 16 13 C 0.03 0.74 4.45 -27.89 -0.12 0.61 16 14 C -0.51 -14.65 8.45 -34.44 -0.29 -14.94 16 15 H 0.05 1.53 7.08 -52.49 -0.37 1.16 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.90 -27.52 13.29 55.43 0.74 -26.79 16 18 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 19 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 22 C -0.11 -2.05 5.38 -26.66 -0.14 -2.20 16 23 C 0.06 0.99 4.76 -3.84 -0.02 0.97 16 24 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 25 H 0.07 0.73 5.80 -51.93 -0.30 0.43 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.36 2.99 9.07 45.56 0.41 3.40 16 28 H 0.07 0.64 7.96 -51.93 -0.41 0.23 16 29 H 0.07 0.49 7.67 -51.93 -0.40 0.09 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 33 H 0.06 0.70 7.85 -51.92 -0.41 0.29 16 34 H 0.07 1.00 6.52 -51.93 -0.34 0.66 16 35 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 1.47 7.06 -51.93 -0.37 1.10 16 37 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 38 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 42 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 44 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 45 H 0.07 1.10 4.72 -51.93 -0.25 0.86 16 LS Contribution 335.21 15.07 5.05 5.05 Total: -1.00 -31.54 335.21 -9.35 -40.89 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -7.46 Total: -0.11 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: -1.39 Total: -20.40 kcal Atomic # 7 Polarization: -35.47 SS G_CDS: -0.13 Total: -35.61 kcal Atomic # 8 Polarization: -6.46 SS G_CDS: -0.39 Total: -6.86 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.54 -9.35 -40.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399729488.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.924 kcal (2) G-P(sol) polarization free energy of solvation -31.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds