Wall clock time and date at job start Mon Mar 30 2020 07:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42906 * 110.01207 * 2 1 4 4 C 1.53871 * 110.03302 * 121.39036 * 2 1 3 5 5 C 1.54269 * 106.59930 * 119.28889 * 4 2 1 6 6 C 1.54888 * 104.19148 * 23.60748 * 5 4 2 7 7 C 1.54260 * 110.03095 * 238.56201 * 2 1 3 8 8 H 1.08991 * 110.48757 * 335.77815 * 7 2 1 9 9 N 1.46898 * 110.48756 * 98.42490 * 7 2 1 10 10 C 1.46849 * 110.99786 * 168.34779 * 9 7 2 11 11 C 1.53039 * 109.52085 * 185.83719 * 10 9 7 12 12 C 1.53125 * 109.28177 * 300.82608 * 11 10 9 13 13 C 1.52994 * 109.57577 * 177.59517 * 12 11 10 14 14 C 1.50693 * 109.47646 * 65.28016 * 13 12 11 15 15 H 1.07995 * 120.00105 * 0.02562 * 14 13 12 16 16 C 1.37881 * 120.00245 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99830 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00104 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47117 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.46905 * 120.00587 * 18 16 14 21 21 H 1.48497 * 109.47628 * 240.00291 * 18 16 14 22 22 C 1.53111 * 109.16014 * 57.65024 * 12 11 10 23 23 C 1.46846 * 111.00144 * 292.56062 * 9 7 2 24 24 H 1.09008 * 109.47245 * 300.05970 * 1 2 3 25 25 H 1.08991 * 109.47637 * 60.06011 * 1 2 3 26 26 H 1.08996 * 109.47020 * 180.02562 * 1 2 3 27 27 H 0.96700 * 113.99695 * 59.30327 * 3 2 1 28 28 H 1.09004 * 110.03146 * 238.56966 * 4 2 1 29 29 H 1.08994 * 110.03553 * 0.02562 * 4 2 1 30 30 H 1.08996 * 110.48820 * 142.28368 * 5 4 2 31 31 H 1.09001 * 110.48469 * 264.79916 * 5 4 2 32 32 H 1.09001 * 110.76194 * 80.37949 * 6 5 4 33 33 H 1.09008 * 110.75404 * 203.55975 * 6 5 4 34 34 H 1.08996 * 109.46648 * 305.85628 * 10 9 7 35 35 H 1.09004 * 109.46343 * 65.83013 * 10 9 7 36 36 H 1.08997 * 109.50328 * 180.88431 * 11 10 9 37 37 H 1.08997 * 109.50518 * 60.76570 * 11 10 9 38 38 H 1.09006 * 109.52048 * 297.74993 * 12 11 10 39 39 H 1.09001 * 109.47410 * 185.28445 * 13 12 11 40 40 H 1.09002 * 109.46913 * 305.28060 * 13 12 11 41 41 H 0.97001 * 119.99958 * 179.97438 * 17 16 14 42 42 H 1.09000 * 109.50298 * 182.40401 * 22 12 11 43 43 H 1.09002 * 109.50003 * 62.28906 * 22 12 11 44 44 H 1.08997 * 109.46166 * 294.17962 * 23 9 7 45 45 H 1.09002 * 109.46142 * 54.15271 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0190 1.3428 0.0000 4 6 2.0571 -0.7530 1.2340 5 6 2.8875 -1.9403 0.7044 6 6 3.3137 -1.5009 -0.7184 7 6 2.0584 -0.7559 -1.2365 8 1 1.3143 -1.4666 -1.5960 9 7 2.4239 0.1896 -2.2997 10 6 3.1783 -0.4827 -3.3653 11 6 3.6660 0.5546 -4.3793 12 6 2.4599 1.2913 -4.9687 13 6 2.9430 2.3711 -5.9391 14 6 3.6191 1.7208 -7.1184 15 1 3.6963 0.6449 -7.1708 16 6 4.1384 2.4993 -8.1310 17 7 4.0440 3.8095 -8.0673 18 14 4.9772 1.6932 -9.5924 19 1 4.9530 0.2178 -9.4252 20 1 4.2602 2.0614 -10.8397 21 1 6.3847 2.1594 -9.6747 22 6 1.6645 1.9419 -3.8337 23 6 1.2348 0.8644 -2.8355 24 1 -0.3634 0.5148 0.8895 25 1 -0.3634 0.5128 -0.8904 26 1 -0.3633 -1.0276 0.0005 27 1 1.7299 1.8666 0.7596 28 1 2.6867 -0.0945 1.8325 29 1 1.2230 -1.1188 1.8327 30 1 3.7638 -2.1030 1.3318 31 1 2.2779 -2.8428 0.6606 32 1 4.1710 -0.8292 -0.6749 33 1 3.5357 -2.3682 -1.3403 34 1 4.0354 -0.9991 -2.9332 35 1 2.5339 -1.2052 -3.8663 36 1 4.2124 0.0536 -5.1782 37 1 4.3215 1.2694 -3.8820 38 1 1.8241 0.5827 -5.4995 39 1 2.0908 2.9556 -6.2858 40 1 3.6503 3.0263 -5.4306 41 1 4.4097 4.3572 -8.7795 42 1 0.7811 2.4321 -4.2428 43 1 2.2886 2.6786 -3.3277 44 1 0.5995 0.1357 -3.3389 45 1 0.6805 1.3266 -2.0186 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399729488.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:57 Heat of formation + Delta-G solvation = -90.479531 kcal Electronic energy + Delta-G solvation = -21759.759628 eV Core-core repulsion = 18774.965556 eV Total energy + Delta-G solvation = -2984.794072 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.00697 -38.97331 -36.11987 -35.34490 -33.86242 -32.05144 -30.90342 -30.09789 -27.91935 -26.20518 -24.94631 -24.02830 -22.37208 -21.23143 -20.66224 -20.40051 -18.43260 -17.99842 -16.62179 -16.42730 -16.12585 -15.71123 -15.47882 -15.20846 -14.90797 -14.66563 -14.49778 -14.21947 -14.03719 -13.69938 -13.45183 -13.15923 -12.90969 -12.73378 -12.62605 -12.42908 -12.37336 -12.30777 -12.04002 -11.91315 -11.89339 -11.69926 -11.40001 -11.30244 -11.13780 -10.82811 -10.72123 -10.52282 -10.50071 -9.05111 -8.16937 -6.26869 1.39190 1.39630 1.52836 2.41986 2.93159 3.15931 3.47060 3.65348 3.69202 3.99471 4.09075 4.11365 4.13992 4.33970 4.36287 4.42442 4.43679 4.52321 4.58627 4.64108 4.74403 4.77144 4.85742 4.87330 4.99091 4.99913 5.04724 5.09995 5.13651 5.17599 5.22562 5.27785 5.33540 5.39370 5.45307 5.47250 5.48654 5.58084 5.81620 5.89773 6.26985 6.31560 6.37778 6.89143 7.14807 7.41435 8.95432 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.037091 B = 0.004151 C = 0.003911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.712191 B = 6744.394038 C = 7157.603873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.131 3.869 3 O -0.554 6.554 4 C -0.144 4.144 5 C -0.116 4.116 6 C -0.119 4.119 7 C 0.084 3.916 8 H 0.053 0.947 9 N -0.520 5.520 10 C 0.063 3.937 11 C -0.091 4.091 12 C -0.073 4.073 13 C 0.035 3.965 14 C -0.529 4.529 15 H 0.060 0.940 16 C -0.003 4.003 17 N -0.936 5.936 18 Si 0.963 3.037 19 H -0.261 1.261 20 H -0.279 1.279 21 H -0.279 1.279 22 C -0.104 4.104 23 C 0.072 3.928 24 H 0.075 0.925 25 H 0.053 0.947 26 H 0.072 0.928 27 H 0.378 0.622 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.026 0.974 36 H 0.056 0.944 37 H 0.044 0.956 38 H 0.046 0.954 39 H -0.015 1.015 40 H -0.015 1.015 41 H 0.262 0.738 42 H 0.057 0.943 43 H 0.050 0.950 44 H 0.021 0.979 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.483 -12.292 20.654 24.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.090 3.910 3 O -0.359 6.359 4 C -0.182 4.182 5 C -0.154 4.154 6 C -0.156 4.156 7 C -0.024 4.024 8 H 0.071 0.929 9 N -0.244 5.244 10 C -0.065 4.065 11 C -0.129 4.129 12 C -0.092 4.092 13 C -0.003 4.003 14 C -0.567 4.567 15 H 0.078 0.922 16 C -0.200 4.200 17 N -0.577 5.577 18 Si 0.787 3.213 19 H -0.185 1.185 20 H -0.204 1.204 21 H -0.205 1.205 22 C -0.142 4.142 23 C -0.056 4.056 24 H 0.094 0.906 25 H 0.072 0.928 26 H 0.091 0.909 27 H 0.225 0.775 28 H 0.092 0.908 29 H 0.104 0.896 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.044 0.956 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.003 0.997 40 H 0.004 0.996 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.040 0.960 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.869 -11.990 20.218 24.227 hybrid contribution -0.278 -0.103 -1.087 1.127 sum -6.147 -12.093 19.131 23.452 Atomic orbital electron populations 1.22665 0.95024 1.03148 1.02839 1.21849 0.92356 0.83013 0.93802 1.86813 1.75955 1.23091 1.50083 1.22869 1.00477 0.97851 0.96955 1.22251 1.00159 0.97968 0.95051 1.22581 0.96951 0.99037 0.97074 1.22677 0.97021 0.92012 0.90735 0.92900 1.61821 1.22479 1.29556 1.10561 1.22096 0.97829 0.94826 0.91743 1.21387 0.97241 0.97517 0.96792 1.21077 0.96209 0.97015 0.94911 1.18999 0.94066 0.93705 0.93482 1.21668 1.36357 0.93330 1.05319 0.92185 1.25979 0.97089 0.95342 1.01581 1.70121 1.47558 1.05419 1.34608 0.85434 0.78055 0.79047 0.78727 1.18519 1.20448 1.20463 1.21554 0.99115 0.97946 0.95546 1.22048 0.91121 0.95427 0.96965 0.90596 0.92785 0.90888 0.77455 0.90756 0.89621 0.90587 0.90398 0.91862 0.91192 0.89909 0.95568 0.92567 0.93686 0.93579 0.99687 0.99612 0.92936 0.92457 0.93138 0.96038 0.89193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.80 8.28 71.98 0.60 -2.21 16 2 C 0.13 2.49 0.85 -10.07 -0.01 2.48 16 3 O -0.55 -12.72 11.20 -148.98 -1.67 -14.39 16 4 C -0.14 -2.06 6.26 31.32 0.20 -1.86 16 5 C -0.12 -1.72 6.83 31.67 0.22 -1.50 16 6 C -0.12 -2.44 4.91 31.89 0.16 -2.28 16 7 C 0.08 1.96 2.10 45.99 0.10 2.06 16 8 H 0.05 1.20 7.85 -2.39 -0.02 1.18 16 9 N -0.52 -15.77 3.87 -864.87 -3.35 -19.12 16 10 C 0.06 2.02 5.22 86.33 0.45 2.47 16 11 C -0.09 -3.72 5.15 30.65 0.16 -3.56 16 12 C -0.07 -3.26 2.20 -10.72 -0.02 -3.29 16 13 C 0.03 1.93 4.45 29.84 0.13 2.06 16 14 C -0.53 -31.05 8.45 25.60 0.22 -30.83 16 15 H 0.06 3.39 7.08 -2.91 -0.02 3.37 16 16 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 17 N -0.94 -59.00 13.29 21.45 0.28 -58.71 16 18 Si 0.96 45.59 29.54 68.60 2.03 47.62 16 19 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 20 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 21 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 22 C -0.10 -3.99 5.38 30.64 0.16 -3.82 16 23 C 0.07 2.25 4.76 86.32 0.41 2.66 16 24 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 25 H 0.05 1.01 5.80 -2.39 -0.01 1.00 16 26 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.38 5.58 9.07 -74.06 -0.67 4.91 16 28 H 0.07 1.08 7.96 -2.38 -0.02 1.06 16 29 H 0.09 0.91 7.67 -2.39 -0.02 0.90 16 30 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.06 1.56 8.10 -2.39 -0.02 1.54 16 33 H 0.07 1.34 7.85 -2.38 -0.02 1.32 16 34 H 0.08 2.40 6.52 -2.39 -0.02 2.39 16 35 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.06 2.40 7.06 -2.39 -0.02 2.38 16 37 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 39 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 40 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 41 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 42 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 44 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.09 2.56 4.72 -2.39 -0.01 2.55 16 Total: -1.00 -69.29 335.21 0.79 -68.50 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: 0.27 Total: 13.44 kcal Atomic # 6 Polarization: -40.56 SS G_CDS: 3.22 Total: -37.33 kcal Atomic # 7 Polarization: -74.77 SS G_CDS: -3.06 Total: -77.83 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: -1.67 Total: -14.39 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -69.29 0.79 -68.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399729488.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.981 kcal (2) G-P(sol) polarization free energy of solvation -69.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds