Wall clock time and date at job start Mon Mar 30 2020 07:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00195 * 2 1 4 4 H 1.48496 * 109.47343 * 89.99575 * 3 2 1 5 5 H 1.48499 * 109.47104 * 210.00166 * 3 2 1 6 6 H 1.48503 * 109.46931 * 329.99865 * 3 2 1 7 7 C 1.37877 * 119.99691 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99908 * 343.15422 * 7 2 1 9 9 C 1.50698 * 119.99773 * 163.15833 * 7 2 1 10 10 C 1.53123 * 109.52260 * 294.19237 * 9 7 2 11 11 C 1.53035 * 109.27906 * 182.44156 * 10 9 7 12 12 N 1.46848 * 109.52229 * 59.18071 * 11 10 9 13 13 C 1.46908 * 110.99929 * 174.16291 * 12 11 10 14 14 C 1.53004 * 109.46652 * 294.20514 * 13 12 11 15 15 C 1.52996 * 109.47015 * 179.97438 * 14 13 12 16 16 C 1.52998 * 109.47465 * 180.02562 * 15 14 13 17 17 H 1.09000 * 110.75071 * 57.01946 * 16 15 14 18 18 C 1.55308 * 110.85052 * 180.71737 * 16 15 14 19 19 C 1.54944 * 100.94069 * 152.32003 * 18 16 15 20 20 O 1.43643 * 105.13894 * 323.55822 * 19 18 16 21 21 C 1.43237 * 109.97327 * 24.42488 * 20 19 18 22 22 C 1.46846 * 111.19568 * 298.25140 * 12 11 10 23 23 C 1.53036 * 109.51967 * 61.74901 * 22 12 11 24 24 H 0.97000 * 120.00330 * 174.74350 * 1 2 3 25 25 H 1.09007 * 109.52709 * 54.37907 * 9 7 2 26 26 H 1.09001 * 109.50019 * 302.38400 * 10 9 7 27 27 H 1.09001 * 109.50311 * 62.49742 * 10 9 7 28 28 H 1.09003 * 109.46605 * 299.16119 * 11 10 9 29 29 H 1.08997 * 109.46455 * 179.19200 * 11 10 9 30 30 H 1.08998 * 109.47195 * 54.20338 * 13 12 11 31 31 H 1.08995 * 109.47153 * 174.20830 * 13 12 11 32 32 H 1.08993 * 109.47469 * 300.00202 * 14 13 12 33 33 H 1.09005 * 109.47102 * 60.00410 * 14 13 12 34 34 H 1.09004 * 109.47556 * 300.00720 * 15 14 13 35 35 H 1.09008 * 109.47253 * 59.99721 * 15 14 13 36 36 H 1.08997 * 111.12191 * 270.24284 * 18 16 15 37 37 H 1.09003 * 111.12571 * 34.40438 * 18 16 15 38 38 H 1.09000 * 110.30883 * 204.63617 * 19 18 16 39 39 H 1.09000 * 110.30934 * 82.47151 * 19 18 16 40 40 H 1.09001 * 109.83170 * 238.78007 * 21 20 19 41 41 H 1.08987 * 109.83000 * 117.80499 * 21 20 19 42 42 H 1.08997 * 109.46611 * 301.73054 * 22 12 11 43 43 H 1.09007 * 109.46329 * 181.75760 * 22 12 11 44 44 H 1.09006 * 109.50357 * 180.87482 * 23 22 12 45 45 H 1.09001 * 109.50538 * 60.76001 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 1.4000 5 1 3.5467 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4992 -2.1092 0.2720 9 6 3.4630 -1.2223 -0.3776 10 6 3.6169 -0.8380 -1.8518 11 6 5.0930 -0.9275 -2.2458 12 7 5.5778 -2.2959 -2.0249 13 6 6.9514 -2.4543 -2.5213 14 6 6.9645 -2.2989 -4.0434 15 6 8.3951 -2.4633 -4.5604 16 6 8.4085 -2.3072 -6.0823 17 1 7.9915 -1.3437 -6.3755 18 6 9.8454 -2.4864 -6.6438 19 6 9.5407 -3.0077 -8.0707 20 8 8.3863 -3.8498 -7.9239 21 6 7.6451 -3.4654 -6.7601 22 6 5.4840 -2.6702 -0.6080 23 6 4.0196 -2.6328 -0.1652 24 1 -0.4851 -0.8365 -0.0770 25 1 4.0141 -0.5158 0.2433 26 1 3.0335 -1.5215 -2.4688 27 1 3.2615 0.1815 -2.0012 28 1 5.6739 -0.2338 -1.6379 29 1 5.2042 -0.6684 -3.2987 30 1 7.5898 -1.6933 -2.0728 31 1 7.3225 -3.4437 -2.2539 32 1 6.3260 -3.0599 -4.4919 33 1 6.5934 -1.3095 -4.3108 34 1 9.0334 -1.7020 -4.1118 35 1 8.7667 -3.4525 -4.2929 36 1 10.3753 -1.5345 -6.6780 37 1 10.4034 -3.2240 -6.0669 38 1 10.3839 -3.5844 -8.4509 39 1 9.3192 -2.1751 -8.7384 40 1 7.5692 -4.3094 -6.0745 41 1 6.6487 -3.1320 -7.0497 42 1 6.0630 -1.9683 -0.0078 43 1 5.8791 -3.6769 -0.4713 44 1 3.9518 -2.8956 0.8906 45 1 3.4425 -3.3445 -0.7556 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400934341.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:16 Heat of formation + Delta-G solvation = -70.908801 kcal Electronic energy + Delta-G solvation = -20769.434045 eV Core-core repulsion = 17785.488624 eV Total energy + Delta-G solvation = -2983.945421 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.78767 -38.55728 -35.56031 -33.76303 -32.00282 -30.77904 -30.14134 -28.99243 -26.24530 -24.36584 -22.84284 -22.51037 -21.61106 -20.65124 -20.33897 -18.68697 -17.46434 -17.10428 -16.27016 -15.46892 -15.32382 -14.85428 -14.37888 -13.86756 -13.84775 -13.56800 -13.35789 -13.33174 -12.85508 -12.77565 -12.31893 -12.00245 -11.89224 -11.75060 -11.52489 -11.37682 -11.08851 -10.91858 -10.77490 -10.62958 -10.52429 -10.48364 -10.02569 -9.76914 -9.70656 -9.52336 -9.25729 -8.67473 -8.21003 -7.90767 -6.36973 -3.99478 3.43361 3.44609 3.61181 3.61557 4.07522 4.22493 4.47340 4.54995 4.60223 4.86115 4.90968 4.99209 5.06711 5.21507 5.30863 5.36553 5.41175 5.43943 5.54765 5.55778 5.61300 5.65738 5.68561 5.72575 5.77996 5.89683 5.95144 5.97995 6.14674 6.16222 6.23457 6.34160 6.47419 6.51725 6.73431 6.81074 6.91380 7.05559 7.31999 7.49071 7.61088 7.70641 8.24803 8.44534 8.97096 9.68085 10.99936 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.031955 B = 0.003424 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.015809 B = 8176.001774 C = 8387.531976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.030 3.970 3 Si 1.043 2.957 4 H -0.288 1.288 5 H -0.272 1.272 6 H -0.288 1.288 7 C -0.594 4.594 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.112 4.112 11 C 0.053 3.947 12 N -0.535 5.535 13 C 0.056 3.944 14 C -0.119 4.119 15 C -0.106 4.106 16 C -0.121 4.121 17 H 0.085 0.915 18 C -0.153 4.153 19 C 0.050 3.950 20 O -0.388 6.388 21 C 0.054 3.946 22 C 0.058 3.942 23 C -0.097 4.097 24 H 0.267 0.733 25 H 0.015 0.985 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.022 0.978 29 H 0.062 0.938 30 H 0.026 0.974 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.059 0.941 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.024 0.976 43 H 0.060 0.940 44 H 0.053 0.947 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.707 -4.072 -11.644 24.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.175 4.175 3 Si 0.872 3.128 4 H -0.215 1.215 5 H -0.198 1.198 6 H -0.214 1.214 7 C -0.632 4.632 8 H 0.072 0.928 9 C 0.001 3.999 10 C -0.150 4.150 11 C -0.074 4.074 12 N -0.260 5.260 13 C -0.073 4.073 14 C -0.157 4.157 15 C -0.144 4.144 16 C -0.140 4.140 17 H 0.104 0.896 18 C -0.191 4.191 19 C -0.026 4.026 20 O -0.308 6.308 21 C -0.023 4.023 22 C -0.070 4.070 23 C -0.135 4.135 24 H 0.077 0.923 25 H 0.033 0.967 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.040 0.960 29 H 0.081 0.919 30 H 0.044 0.956 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.077 0.923 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.042 0.958 43 H 0.079 0.921 44 H 0.072 0.928 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 20.129 -2.914 -11.965 23.597 hybrid contribution 0.731 -0.883 0.589 1.289 sum 20.860 -3.797 -11.376 24.062 Atomic orbital electron populations 1.70794 1.07207 1.30426 1.46157 1.25748 0.96116 1.02416 0.93182 0.84102 0.75832 0.75861 0.77020 1.21544 1.19752 1.21418 1.22018 0.94403 0.96150 1.50617 0.92767 1.19043 0.97075 0.92143 0.91610 1.22031 0.91994 1.00839 1.00103 1.22263 0.98218 0.87443 0.99475 1.61938 1.20082 1.25557 1.18447 1.22068 0.89873 1.00404 0.94923 1.21655 0.95855 1.02797 0.95377 1.21526 0.97696 1.02197 0.93022 1.22759 0.95146 0.99632 0.96462 0.89642 1.23337 0.97168 1.02315 0.96283 1.23352 0.88549 0.94213 0.96519 1.88399 1.38783 1.57382 1.46200 1.23273 0.95214 0.96926 0.86853 1.22166 0.98972 0.98751 0.87105 1.21516 0.92528 1.00079 0.99377 0.92272 0.96666 0.92114 0.92560 0.95960 0.91919 0.95589 0.91378 0.90930 0.91687 0.91652 0.91591 0.89988 0.90254 0.89940 0.92300 0.90891 0.91242 0.95797 0.92142 0.92799 0.92242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.35 13.70 55.43 0.76 -27.59 16 2 C 0.03 0.86 5.35 -17.82 -0.10 0.77 16 3 Si 1.04 25.36 26.31 -169.99 -4.47 20.89 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.27 -6.04 5.50 56.52 0.31 -5.73 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.59 -16.83 8.83 -34.44 -0.30 -17.14 16 8 H 0.05 1.66 7.99 -52.49 -0.42 1.24 16 9 C 0.02 0.49 1.71 -91.65 -0.16 0.33 16 10 C -0.11 -2.44 4.81 -26.65 -0.13 -2.57 16 11 C 0.05 0.96 5.29 -3.83 -0.02 0.94 16 12 N -0.54 -8.90 4.66 -234.66 -1.09 -10.00 16 13 C 0.06 0.72 4.96 -3.82 -0.02 0.70 16 14 C -0.12 -1.31 4.99 -26.73 -0.13 -1.44 16 15 C -0.11 -0.91 4.60 -26.73 -0.12 -1.03 16 16 C -0.12 -1.00 3.03 -88.67 -0.27 -1.27 16 17 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 18 C -0.15 -1.08 6.62 -24.48 -0.16 -1.24 16 19 C 0.05 0.40 7.78 38.18 0.30 0.70 16 20 O -0.39 -4.34 11.36 -35.23 -0.40 -4.74 16 21 C 0.05 0.52 6.57 37.88 0.25 0.77 16 22 C 0.06 0.99 5.46 -3.83 -0.02 0.97 16 23 C -0.10 -2.01 5.32 -26.65 -0.14 -2.15 16 24 H 0.27 8.29 8.73 -40.82 -0.36 7.94 16 25 H 0.02 0.37 6.71 -51.93 -0.35 0.02 16 26 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 27 H 0.06 1.27 5.10 -51.93 -0.27 1.01 16 28 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 1.01 6.21 -51.93 -0.32 0.69 16 30 H 0.03 0.33 8.12 -51.93 -0.42 -0.09 16 31 H 0.07 0.81 7.99 -51.93 -0.41 0.40 16 32 H 0.07 0.84 7.48 -51.93 -0.39 0.46 16 33 H 0.06 0.75 6.43 -51.93 -0.33 0.42 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.55 8.07 -51.92 -0.42 0.13 16 36 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.54 8.04 -51.93 -0.42 0.12 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.71 7.73 -51.93 -0.40 0.30 16 41 H 0.07 0.68 8.14 -51.94 -0.42 0.26 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 0.92 8.02 -51.93 -0.42 0.50 16 44 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 337.24 15.07 5.08 5.08 Total: -1.00 -30.76 337.24 -9.61 -40.37 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -8.46 Total: -2.34 kcal Atomic # 6 Polarization: -20.64 SS G_CDS: -1.03 Total: -21.67 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: -0.33 Total: -37.59 kcal Atomic # 8 Polarization: -4.34 SS G_CDS: -0.40 Total: -4.74 kcal Atomic # 14 Polarization: 25.36 SS G_CDS: -4.47 Total: 20.89 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.76 -9.61 -40.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400934341.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.535 kcal (2) G-P(sol) polarization free energy of solvation -30.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds