Wall clock time and date at job start Mon Mar 30 2020 07:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00195 * 2 1 4 4 H 1.48496 * 109.47343 * 89.99575 * 3 2 1 5 5 H 1.48499 * 109.47104 * 210.00166 * 3 2 1 6 6 H 1.48503 * 109.46931 * 329.99865 * 3 2 1 7 7 C 1.37877 * 119.99691 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99908 * 343.15422 * 7 2 1 9 9 C 1.50698 * 119.99773 * 163.15833 * 7 2 1 10 10 C 1.53123 * 109.52260 * 294.19237 * 9 7 2 11 11 C 1.53035 * 109.27906 * 182.44156 * 10 9 7 12 12 N 1.46848 * 109.52229 * 59.18071 * 11 10 9 13 13 C 1.46908 * 110.99929 * 174.16291 * 12 11 10 14 14 C 1.53004 * 109.46652 * 294.20514 * 13 12 11 15 15 C 1.52996 * 109.47015 * 179.97438 * 14 13 12 16 16 C 1.52998 * 109.47465 * 180.02562 * 15 14 13 17 17 H 1.09000 * 110.75071 * 57.01946 * 16 15 14 18 18 C 1.55308 * 110.85052 * 180.71737 * 16 15 14 19 19 C 1.54944 * 100.94069 * 152.32003 * 18 16 15 20 20 O 1.43643 * 105.13894 * 323.55822 * 19 18 16 21 21 C 1.43237 * 109.97327 * 24.42488 * 20 19 18 22 22 C 1.46846 * 111.19568 * 298.25140 * 12 11 10 23 23 C 1.53036 * 109.51967 * 61.74901 * 22 12 11 24 24 H 0.97000 * 120.00330 * 174.74350 * 1 2 3 25 25 H 1.09007 * 109.52709 * 54.37907 * 9 7 2 26 26 H 1.09001 * 109.50019 * 302.38400 * 10 9 7 27 27 H 1.09001 * 109.50311 * 62.49742 * 10 9 7 28 28 H 1.09003 * 109.46605 * 299.16119 * 11 10 9 29 29 H 1.08997 * 109.46455 * 179.19200 * 11 10 9 30 30 H 1.08998 * 109.47195 * 54.20338 * 13 12 11 31 31 H 1.08995 * 109.47153 * 174.20830 * 13 12 11 32 32 H 1.08993 * 109.47469 * 300.00202 * 14 13 12 33 33 H 1.09005 * 109.47102 * 60.00410 * 14 13 12 34 34 H 1.09004 * 109.47556 * 300.00720 * 15 14 13 35 35 H 1.09008 * 109.47253 * 59.99721 * 15 14 13 36 36 H 1.08997 * 111.12191 * 270.24284 * 18 16 15 37 37 H 1.09003 * 111.12571 * 34.40438 * 18 16 15 38 38 H 1.09000 * 110.30883 * 204.63617 * 19 18 16 39 39 H 1.09000 * 110.30934 * 82.47151 * 19 18 16 40 40 H 1.09001 * 109.83170 * 238.78007 * 21 20 19 41 41 H 1.08987 * 109.83000 * 117.80499 * 21 20 19 42 42 H 1.08997 * 109.46611 * 301.73054 * 22 12 11 43 43 H 1.09007 * 109.46329 * 181.75760 * 22 12 11 44 44 H 1.09006 * 109.50357 * 180.87482 * 23 22 12 45 45 H 1.09001 * 109.50538 * 60.76001 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 1.4000 5 1 3.5467 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4992 -2.1092 0.2720 9 6 3.4630 -1.2223 -0.3776 10 6 3.6169 -0.8380 -1.8518 11 6 5.0930 -0.9275 -2.2458 12 7 5.5778 -2.2959 -2.0249 13 6 6.9514 -2.4543 -2.5213 14 6 6.9645 -2.2989 -4.0434 15 6 8.3951 -2.4633 -4.5604 16 6 8.4085 -2.3072 -6.0823 17 1 7.9915 -1.3437 -6.3755 18 6 9.8454 -2.4864 -6.6438 19 6 9.5407 -3.0077 -8.0707 20 8 8.3863 -3.8498 -7.9239 21 6 7.6451 -3.4654 -6.7601 22 6 5.4840 -2.6702 -0.6080 23 6 4.0196 -2.6328 -0.1652 24 1 -0.4851 -0.8365 -0.0770 25 1 4.0141 -0.5158 0.2433 26 1 3.0335 -1.5215 -2.4688 27 1 3.2615 0.1815 -2.0012 28 1 5.6739 -0.2338 -1.6379 29 1 5.2042 -0.6684 -3.2987 30 1 7.5898 -1.6933 -2.0728 31 1 7.3225 -3.4437 -2.2539 32 1 6.3260 -3.0599 -4.4919 33 1 6.5934 -1.3095 -4.3108 34 1 9.0334 -1.7020 -4.1118 35 1 8.7667 -3.4525 -4.2929 36 1 10.3753 -1.5345 -6.6780 37 1 10.4034 -3.2240 -6.0669 38 1 10.3839 -3.5844 -8.4509 39 1 9.3192 -2.1751 -8.7384 40 1 7.5692 -4.3094 -6.0745 41 1 6.6487 -3.1320 -7.0497 42 1 6.0630 -1.9683 -0.0078 43 1 5.8791 -3.6769 -0.4713 44 1 3.9518 -2.8956 0.8906 45 1 3.4425 -3.3445 -0.7556 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400934341.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:15 Heat of formation + Delta-G solvation = -90.767976 kcal Electronic energy + Delta-G solvation = -20770.295204 eV Core-core repulsion = 17785.488624 eV Total energy + Delta-G solvation = -2984.806580 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.50561 -39.93512 -36.71064 -35.24263 -33.67614 -31.89425 -31.56616 -29.88978 -27.68578 -25.60978 -24.10349 -23.66585 -22.90000 -21.66448 -21.16515 -20.38884 -19.66529 -17.77446 -17.12409 -16.65715 -16.24657 -15.78331 -15.73020 -15.47968 -15.18274 -15.04407 -14.64319 -14.22163 -14.05942 -13.99061 -13.68847 -13.36114 -13.10934 -12.95552 -12.53888 -12.48282 -12.28979 -12.13853 -12.03736 -11.84694 -11.61950 -11.52194 -11.43447 -11.40433 -11.23321 -11.00416 -10.66818 -10.48369 -10.44193 -9.17418 -8.70117 -6.33942 1.46376 1.52004 1.71118 2.51505 2.93749 3.03800 3.07397 3.54433 3.73739 3.95921 4.06930 4.11660 4.17270 4.27064 4.30288 4.31944 4.36702 4.46317 4.51823 4.65265 4.67582 4.72926 4.77690 4.80256 4.84005 4.86814 4.89881 4.96205 4.97263 4.99381 5.03486 5.07443 5.19958 5.26395 5.33793 5.41691 5.46903 5.53569 5.76658 6.04206 6.06917 6.17313 6.22560 6.33645 6.60030 7.43110 8.64800 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.031955 B = 0.003424 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.015809 B = 8176.001774 C = 8387.531976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.024 4.024 3 Si 1.085 2.915 4 H -0.276 1.276 5 H -0.236 1.236 6 H -0.288 1.288 7 C -0.599 4.599 8 H 0.011 0.989 9 C 0.016 3.984 10 C -0.109 4.109 11 C 0.063 3.937 12 N -0.550 5.550 13 C 0.057 3.943 14 C -0.114 4.114 15 C -0.097 4.097 16 C -0.118 4.118 17 H 0.086 0.914 18 C -0.146 4.146 19 C 0.041 3.959 20 O -0.416 6.416 21 C 0.049 3.951 22 C 0.066 3.934 23 C -0.095 4.095 24 H 0.251 0.749 25 H 0.020 0.980 26 H 0.038 0.962 27 H 0.048 0.952 28 H 0.029 0.971 29 H 0.084 0.916 30 H 0.036 0.964 31 H 0.081 0.919 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.099 0.901 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.061 0.939 42 H 0.033 0.967 43 H 0.085 0.915 44 H 0.050 0.950 45 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.490 -3.147 -12.269 27.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.221 4.221 3 Si 0.906 3.094 4 H -0.202 1.202 5 H -0.160 1.160 6 H -0.214 1.214 7 C -0.637 4.637 8 H 0.030 0.970 9 C -0.003 4.003 10 C -0.147 4.147 11 C -0.065 4.065 12 N -0.275 5.275 13 C -0.070 4.070 14 C -0.152 4.152 15 C -0.134 4.134 16 C -0.137 4.137 17 H 0.104 0.896 18 C -0.183 4.183 19 C -0.035 4.035 20 O -0.336 6.336 21 C -0.027 4.027 22 C -0.061 4.061 23 C -0.133 4.133 24 H 0.059 0.941 25 H 0.039 0.961 26 H 0.057 0.943 27 H 0.067 0.933 28 H 0.048 0.952 29 H 0.102 0.898 30 H 0.054 0.946 31 H 0.099 0.901 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.118 0.882 37 H 0.102 0.898 38 H 0.112 0.888 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.080 0.920 42 H 0.051 0.949 43 H 0.103 0.897 44 H 0.069 0.931 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 23.937 -2.023 -12.595 27.124 hybrid contribution -0.518 -1.304 0.779 1.605 sum 23.419 -3.327 -11.816 26.441 Atomic orbital electron populations 1.70932 1.08556 1.29440 1.49197 1.27283 0.96049 1.06501 0.92257 0.83606 0.76133 0.71463 0.78161 1.20158 1.15955 1.21411 1.22300 0.97089 0.94490 1.49819 0.97019 1.19052 0.93896 0.94333 0.92986 1.21870 0.95125 0.99661 0.98079 1.22103 0.94975 0.88577 1.00849 1.61890 1.22900 1.24672 1.18051 1.22164 0.87565 1.01487 0.95812 1.21604 0.97322 1.02122 0.94169 1.21436 0.96142 1.02933 0.92935 1.22721 0.95808 0.98891 0.96231 0.89560 1.23322 0.96410 1.03287 0.95313 1.23568 0.88008 0.94357 0.97528 1.88369 1.39967 1.58460 1.46787 1.23314 0.95147 0.97510 0.86735 1.22041 0.95851 1.00575 0.87678 1.21421 0.95208 0.97548 0.99131 0.94073 0.96143 0.94273 0.93313 0.95245 0.89783 0.94555 0.90071 0.92004 0.92181 0.90464 0.91032 0.88242 0.89778 0.88766 0.91752 0.91156 0.92029 0.94904 0.89658 0.93085 0.94216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.94 13.70 21.45 0.29 -60.64 16 2 C -0.02 -1.43 5.35 84.65 0.45 -0.97 16 3 Si 1.09 50.51 26.31 68.60 1.81 52.31 16 4 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 5 H -0.24 -9.54 5.50 99.48 0.55 -9.00 16 6 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 7 C -0.60 -35.04 8.83 25.60 0.23 -34.81 16 8 H 0.01 0.75 7.99 -2.91 -0.02 0.72 16 9 C 0.02 0.78 1.71 -11.46 -0.02 0.76 16 10 C -0.11 -4.66 4.81 30.65 0.15 -4.51 16 11 C 0.06 2.06 5.29 86.32 0.46 2.52 16 12 N -0.55 -16.66 4.66 -896.34 -4.17 -20.83 16 13 C 0.06 1.24 4.96 86.30 0.43 1.67 16 14 C -0.11 -2.15 4.99 30.59 0.15 -2.00 16 15 C -0.10 -1.31 4.60 30.59 0.14 -1.17 16 16 C -0.12 -1.64 3.03 -9.53 -0.03 -1.67 16 17 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 18 C -0.15 -1.61 6.62 32.05 0.21 -1.40 16 19 C 0.04 0.58 7.78 72.65 0.56 1.14 16 20 O -0.42 -8.83 11.36 -148.98 -1.69 -10.53 16 21 C 0.05 0.90 6.57 72.45 0.48 1.37 16 22 C 0.07 2.09 5.46 86.33 0.47 2.56 16 23 C -0.10 -3.89 5.32 30.65 0.16 -3.73 16 24 H 0.25 16.45 8.73 -92.71 -0.81 15.64 16 25 H 0.02 0.95 6.71 -2.38 -0.02 0.94 16 26 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.05 2.12 5.10 -2.39 -0.01 2.11 16 28 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.08 2.42 6.21 -2.39 -0.01 2.41 16 30 H 0.04 0.75 8.12 -2.39 -0.02 0.73 16 31 H 0.08 1.59 7.99 -2.39 -0.02 1.57 16 32 H 0.06 1.30 7.48 -2.39 -0.02 1.29 16 33 H 0.06 1.19 6.43 -2.38 -0.02 1.18 16 34 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 35 H 0.07 0.92 8.07 -2.38 -0.02 0.90 16 36 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.08 0.86 8.04 -2.39 -0.02 0.85 16 38 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.07 1.28 7.73 -2.39 -0.02 1.26 16 41 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.09 2.29 8.02 -2.38 -0.02 2.27 16 44 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 45 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -68.80 337.24 0.80 -68.00 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: 0.72 Total: 11.93 kcal Atomic # 6 Polarization: -44.09 SS G_CDS: 3.84 Total: -40.25 kcal Atomic # 7 Polarization: -77.59 SS G_CDS: -3.88 Total: -81.47 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: -1.69 Total: -10.53 kcal Atomic # 14 Polarization: 50.51 SS G_CDS: 1.81 Total: 52.31 kcal Total: -68.80 0.80 -68.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400934341.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.770 kcal (2) G-P(sol) polarization free energy of solvation -68.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds