Wall clock time and date at job start Mon Mar 30 2020 07:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86793 * 119.99714 * 2 1 4 4 H 1.48504 * 109.47536 * 269.99894 * 3 2 1 5 5 H 1.48495 * 109.47455 * 30.00231 * 3 2 1 6 6 H 1.48505 * 109.46927 * 149.99973 * 3 2 1 7 7 C 1.37878 * 120.00064 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99635 * 359.97438 * 7 2 1 9 9 C 1.50690 * 119.99952 * 180.02562 * 7 2 1 10 10 C 1.53120 * 109.52530 * 179.97438 * 9 7 2 11 11 C 1.53041 * 109.28182 * 177.55452 * 10 9 7 12 12 N 1.46849 * 109.52442 * 300.82868 * 11 10 9 13 13 C 1.46901 * 110.99649 * 185.83742 * 12 11 10 14 14 C 1.53000 * 109.46769 * 169.99929 * 13 12 11 15 15 C 1.53001 * 109.46886 * 180.02562 * 14 13 12 16 16 C 1.53000 * 109.46886 * 180.02562 * 15 14 13 17 17 H 1.08995 * 110.43676 * 303.90203 * 16 15 14 18 18 C 1.54813 * 110.48514 * 181.21573 * 16 15 14 19 19 C 1.54989 * 102.09341 * 220.43925 * 18 16 15 20 20 O 1.44382 * 103.48933 * 37.02530 * 19 18 16 21 21 C 1.43745 * 106.97485 * 319.93900 * 20 19 18 22 22 C 1.46839 * 111.20047 * 61.73811 * 12 11 10 23 23 C 1.53034 * 109.52552 * 298.25821 * 22 12 11 24 24 H 0.96995 * 120.00385 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.52684 * 59.87198 * 9 7 2 26 26 H 1.09005 * 109.50142 * 57.62235 * 10 9 7 27 27 H 1.08998 * 109.50777 * 297.50132 * 10 9 7 28 28 H 1.08991 * 109.46218 * 180.80508 * 11 10 9 29 29 H 1.09001 * 109.45364 * 60.83790 * 11 10 9 30 30 H 1.09002 * 109.47401 * 49.99636 * 13 12 11 31 31 H 1.09001 * 109.46874 * 289.99649 * 13 12 11 32 32 H 1.09001 * 109.47194 * 299.99524 * 14 13 12 33 33 H 1.08992 * 109.47399 * 59.99697 * 14 13 12 34 34 H 1.09001 * 109.47109 * 299.99380 * 15 14 13 35 35 H 1.09002 * 109.47508 * 59.99571 * 15 14 13 36 36 H 1.08999 * 110.90921 * 338.64264 * 18 16 15 37 37 H 1.09010 * 110.90844 * 102.24277 * 18 16 15 38 38 H 1.09001 * 110.62276 * 278.52229 * 19 18 16 39 39 H 1.09001 * 110.75534 * 155.59031 * 19 18 16 40 40 H 1.08996 * 109.87294 * 267.08669 * 21 20 19 41 41 H 1.08997 * 110.00111 * 146.00509 * 21 20 19 42 42 H 1.09006 * 109.46266 * 58.27078 * 22 12 11 43 43 H 1.09002 * 109.46276 * 178.24270 * 22 12 11 44 44 H 1.09006 * 109.50444 * 299.24199 * 23 22 12 45 45 H 1.09003 * 109.50687 * 179.12283 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0233 -2.6372 -0.0001 11 6 5.5525 -2.6310 -0.0611 12 7 5.9923 -1.9366 -1.2780 13 6 7.4492 -2.0314 -1.4407 14 6 7.8415 -1.5211 -2.8287 15 6 9.3588 -1.6205 -2.9985 16 6 9.7512 -1.1096 -4.3863 17 1 9.2149 -1.6592 -5.1598 18 6 11.2806 -1.2282 -4.5948 19 6 11.6116 0.0952 -5.3306 20 8 10.7331 1.0562 -4.7066 21 6 9.4699 0.4008 -4.5045 22 6 5.5529 -0.5355 -1.2780 23 6 4.0238 -0.4790 -1.2533 24 1 -0.4850 0.8400 -0.0004 25 1 3.8755 -0.6790 0.8891 26 1 3.6267 -3.1638 -0.8681 27 1 3.6975 -3.1390 0.9110 28 1 5.9194 -3.6572 -0.0758 29 1 5.9487 -2.1162 0.8142 30 1 7.7598 -3.0708 -1.3345 31 1 7.9401 -1.4259 -0.6788 32 1 7.3506 -2.1267 -3.5906 33 1 7.5309 -0.4818 -2.9349 34 1 9.8501 -1.0152 -2.2367 35 1 9.6690 -2.6600 -2.8925 36 1 11.8006 -1.2821 -3.6384 37 1 11.5228 -2.0901 -5.2168 38 1 11.3915 0.0083 -6.3946 39 1 12.6546 0.3722 -5.1770 40 1 8.8140 0.5904 -5.3541 41 1 9.0039 0.7638 -3.5884 42 1 5.9491 -0.0305 -0.3969 43 1 5.9202 -0.0397 -2.1765 44 1 3.6270 -0.9717 -2.1411 45 1 3.6982 0.5612 -1.2376 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400934344.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:18 Heat of formation + Delta-G solvation = -62.923353 kcal Electronic energy + Delta-G solvation = -20885.943708 eV Core-core repulsion = 17902.344561 eV Total energy + Delta-G solvation = -2983.599146 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.80780 -38.58787 -35.54801 -33.73708 -31.96020 -30.81885 -30.19229 -28.97527 -26.38690 -24.57398 -23.04036 -22.60082 -21.73483 -20.58025 -20.36724 -18.79899 -16.98362 -16.67024 -16.35695 -15.67349 -15.20842 -15.15094 -14.44556 -14.18364 -13.88647 -13.50060 -13.22799 -13.09698 -12.91751 -12.74709 -12.37485 -12.23760 -11.78159 -11.70183 -11.64444 -11.34063 -11.21862 -10.96972 -10.85375 -10.68588 -10.55090 -10.48340 -10.03503 -9.90263 -9.85263 -9.57208 -9.03475 -8.88580 -8.48413 -7.91781 -6.03326 -4.01428 3.29067 3.39323 3.41525 3.68167 4.09279 4.27501 4.44232 4.48282 4.59468 4.87460 4.89283 4.95712 5.15536 5.21282 5.27523 5.36654 5.38680 5.42899 5.53731 5.55426 5.61739 5.65058 5.69775 5.72429 5.79423 5.86936 5.94016 5.94830 6.12819 6.14297 6.22063 6.30275 6.40664 6.48566 6.61056 6.77662 6.87383 6.96737 7.25804 7.47048 7.56480 7.68125 7.83056 8.57868 9.01425 9.59898 11.10289 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.028237 B = 0.003795 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.377970 B = 7376.476890 C = 8115.334543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.068 3.932 3 Si 0.887 3.113 4 H -0.279 1.279 5 H -0.298 1.298 6 H -0.268 1.268 7 C -0.509 4.509 8 H 0.073 0.927 9 C 0.013 3.987 10 C -0.096 4.096 11 C 0.057 3.943 12 N -0.535 5.535 13 C 0.055 3.945 14 C -0.120 4.120 15 C -0.108 4.108 16 C -0.121 4.121 17 H 0.084 0.916 18 C -0.152 4.152 19 C 0.045 3.955 20 O -0.381 6.381 21 C 0.047 3.953 22 C 0.054 3.946 23 C -0.116 4.116 24 H 0.263 0.737 25 H 0.021 0.979 26 H 0.063 0.937 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.024 0.976 30 H 0.069 0.931 31 H 0.026 0.974 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.059 0.941 39 H 0.090 0.910 40 H 0.058 0.942 41 H 0.088 0.912 42 H 0.023 0.977 43 H 0.064 0.936 44 H 0.068 0.932 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.714 -2.953 -8.342 24.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.133 4.133 3 Si 0.718 3.282 4 H -0.206 1.206 5 H -0.226 1.226 6 H -0.193 1.193 7 C -0.547 4.547 8 H 0.091 0.909 9 C -0.006 4.006 10 C -0.134 4.134 11 C -0.071 4.071 12 N -0.259 5.259 13 C -0.073 4.073 14 C -0.158 4.158 15 C -0.146 4.146 16 C -0.140 4.140 17 H 0.103 0.897 18 C -0.189 4.189 19 C -0.032 4.032 20 O -0.300 6.300 21 C -0.029 4.029 22 C -0.074 4.074 23 C -0.154 4.154 24 H 0.072 0.928 25 H 0.039 0.961 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.042 0.958 30 H 0.087 0.913 31 H 0.045 0.955 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.077 0.923 39 H 0.108 0.892 40 H 0.077 0.923 41 H 0.106 0.894 42 H 0.041 0.959 43 H 0.082 0.918 44 H 0.087 0.913 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 22.367 -2.860 -8.669 24.158 hybrid contribution 0.652 1.160 0.565 1.446 sum 23.019 -1.700 -8.104 24.463 Atomic orbital electron populations 1.69905 1.06270 1.26819 1.51254 1.25030 0.94674 0.99008 0.94625 0.86847 0.79797 0.83690 0.77882 1.20555 1.22604 1.19286 1.21072 0.88901 0.94392 1.50338 0.90882 1.19181 0.96600 0.92031 0.92797 1.21494 0.91415 0.99265 1.01222 1.22174 0.98125 0.97203 0.89558 1.61930 1.10659 1.14852 1.38484 1.22070 0.88661 1.00469 0.96071 1.21680 0.94411 1.01976 0.97685 1.21600 0.96392 1.01346 0.95276 1.22576 0.95905 0.96494 0.99040 0.89727 1.23216 0.95710 0.98380 1.01627 1.23542 0.95167 0.87939 0.96547 1.88878 1.23296 1.36712 1.81101 1.23340 0.86362 0.91447 1.01785 1.22231 0.98127 0.87824 0.99222 1.22011 0.91517 0.99861 1.01982 0.92764 0.96135 0.91821 0.92438 0.91942 0.95752 0.91271 0.95549 0.90943 0.91706 0.91776 0.91548 0.90348 0.90264 0.92321 0.89173 0.92345 0.89425 0.95871 0.91796 0.91297 0.93493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.02 13.96 55.43 0.77 -27.25 16 2 C 0.07 1.97 5.45 -17.82 -0.10 1.88 16 3 Si 0.89 22.31 24.36 -169.99 -4.14 18.17 16 4 H -0.28 -6.80 6.89 56.52 0.39 -6.41 16 5 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 6 H -0.27 -6.48 6.53 56.52 0.37 -6.11 16 7 C -0.51 -14.44 9.14 -34.44 -0.31 -14.76 16 8 H 0.07 2.24 7.99 -52.48 -0.42 1.82 16 9 C 0.01 0.30 1.75 -91.65 -0.16 0.14 16 10 C -0.10 -1.94 5.32 -26.65 -0.14 -2.08 16 11 C 0.06 0.96 5.46 -3.83 -0.02 0.94 16 12 N -0.53 -8.78 4.66 -234.67 -1.09 -9.88 16 13 C 0.06 0.71 4.96 -3.82 -0.02 0.69 16 14 C -0.12 -1.31 4.96 -26.73 -0.13 -1.45 16 15 C -0.11 -0.95 4.44 -26.73 -0.12 -1.07 16 16 C -0.12 -1.01 3.08 -89.09 -0.27 -1.28 16 17 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 18 C -0.15 -1.08 6.71 -24.73 -0.17 -1.25 16 19 C 0.04 0.35 7.72 38.21 0.29 0.65 16 20 O -0.38 -4.31 11.52 -35.23 -0.41 -4.72 16 21 C 0.05 0.47 6.93 37.73 0.26 0.73 16 22 C 0.05 0.96 5.29 -3.84 -0.02 0.94 16 23 C -0.12 -2.54 4.84 -26.65 -0.13 -2.67 16 24 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 25 H 0.02 0.51 7.19 -51.93 -0.37 0.13 16 26 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 27 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.06 0.92 8.01 -51.93 -0.42 0.50 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.81 7.99 -51.93 -0.41 0.40 16 31 H 0.03 0.34 8.12 -51.93 -0.42 -0.08 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 0.76 5.15 -51.93 -0.27 0.49 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.08 0.56 7.87 -51.93 -0.41 0.15 16 37 H 0.08 0.45 8.14 -51.92 -0.42 0.03 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.09 0.90 6.70 -51.93 -0.35 0.56 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.06 1.03 6.21 -51.93 -0.32 0.71 16 44 H 0.07 1.55 8.14 -51.93 -0.42 1.12 16 45 H 0.05 1.08 3.38 -51.93 -0.18 0.91 16 LS Contribution 333.86 15.07 5.03 5.03 Total: -1.00 -30.90 333.86 -9.12 -40.02 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -8.24 Total: -2.80 kcal Atomic # 6 Polarization: -17.54 SS G_CDS: -1.04 Total: -18.58 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: -0.32 Total: -37.12 kcal Atomic # 8 Polarization: -4.31 SS G_CDS: -0.41 Total: -4.72 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.14 Total: 18.17 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.90 -9.12 -40.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400934344.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.908 kcal (2) G-P(sol) polarization free energy of solvation -30.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds