Wall clock time and date at job start Mon Mar 30 2020 07:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86793 * 119.99714 * 2 1 4 4 H 1.48504 * 109.47536 * 269.99894 * 3 2 1 5 5 H 1.48495 * 109.47455 * 30.00231 * 3 2 1 6 6 H 1.48505 * 109.46927 * 149.99973 * 3 2 1 7 7 C 1.37878 * 120.00064 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99635 * 359.97438 * 7 2 1 9 9 C 1.50690 * 119.99952 * 180.02562 * 7 2 1 10 10 C 1.53120 * 109.52530 * 179.97438 * 9 7 2 11 11 C 1.53041 * 109.28182 * 177.55452 * 10 9 7 12 12 N 1.46849 * 109.52442 * 300.82868 * 11 10 9 13 13 C 1.46901 * 110.99649 * 185.83742 * 12 11 10 14 14 C 1.53000 * 109.46769 * 169.99929 * 13 12 11 15 15 C 1.53001 * 109.46886 * 180.02562 * 14 13 12 16 16 C 1.53000 * 109.46886 * 180.02562 * 15 14 13 17 17 H 1.08995 * 110.43676 * 303.90203 * 16 15 14 18 18 C 1.54813 * 110.48514 * 181.21573 * 16 15 14 19 19 C 1.54989 * 102.09341 * 220.43925 * 18 16 15 20 20 O 1.44382 * 103.48933 * 37.02530 * 19 18 16 21 21 C 1.43745 * 106.97485 * 319.93900 * 20 19 18 22 22 C 1.46839 * 111.20047 * 61.73811 * 12 11 10 23 23 C 1.53034 * 109.52552 * 298.25821 * 22 12 11 24 24 H 0.96995 * 120.00385 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.52684 * 59.87198 * 9 7 2 26 26 H 1.09005 * 109.50142 * 57.62235 * 10 9 7 27 27 H 1.08998 * 109.50777 * 297.50132 * 10 9 7 28 28 H 1.08991 * 109.46218 * 180.80508 * 11 10 9 29 29 H 1.09001 * 109.45364 * 60.83790 * 11 10 9 30 30 H 1.09002 * 109.47401 * 49.99636 * 13 12 11 31 31 H 1.09001 * 109.46874 * 289.99649 * 13 12 11 32 32 H 1.09001 * 109.47194 * 299.99524 * 14 13 12 33 33 H 1.08992 * 109.47399 * 59.99697 * 14 13 12 34 34 H 1.09001 * 109.47109 * 299.99380 * 15 14 13 35 35 H 1.09002 * 109.47508 * 59.99571 * 15 14 13 36 36 H 1.08999 * 110.90921 * 338.64264 * 18 16 15 37 37 H 1.09010 * 110.90844 * 102.24277 * 18 16 15 38 38 H 1.09001 * 110.62276 * 278.52229 * 19 18 16 39 39 H 1.09001 * 110.75534 * 155.59031 * 19 18 16 40 40 H 1.08996 * 109.87294 * 267.08669 * 21 20 19 41 41 H 1.08997 * 110.00111 * 146.00509 * 21 20 19 42 42 H 1.09006 * 109.46266 * 58.27078 * 22 12 11 43 43 H 1.09002 * 109.46276 * 178.24270 * 22 12 11 44 44 H 1.09006 * 109.50444 * 299.24199 * 23 22 12 45 45 H 1.09003 * 109.50687 * 179.12283 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0233 -2.6372 -0.0001 11 6 5.5525 -2.6310 -0.0611 12 7 5.9923 -1.9366 -1.2780 13 6 7.4492 -2.0314 -1.4407 14 6 7.8415 -1.5211 -2.8287 15 6 9.3588 -1.6205 -2.9985 16 6 9.7512 -1.1096 -4.3863 17 1 9.2149 -1.6592 -5.1598 18 6 11.2806 -1.2282 -4.5948 19 6 11.6116 0.0952 -5.3306 20 8 10.7331 1.0562 -4.7066 21 6 9.4699 0.4008 -4.5045 22 6 5.5529 -0.5355 -1.2780 23 6 4.0238 -0.4790 -1.2533 24 1 -0.4850 0.8400 -0.0004 25 1 3.8755 -0.6790 0.8891 26 1 3.6267 -3.1638 -0.8681 27 1 3.6975 -3.1390 0.9110 28 1 5.9194 -3.6572 -0.0758 29 1 5.9487 -2.1162 0.8142 30 1 7.7598 -3.0708 -1.3345 31 1 7.9401 -1.4259 -0.6788 32 1 7.3506 -2.1267 -3.5906 33 1 7.5309 -0.4818 -2.9349 34 1 9.8501 -1.0152 -2.2367 35 1 9.6690 -2.6600 -2.8925 36 1 11.8006 -1.2821 -3.6384 37 1 11.5228 -2.0901 -5.2168 38 1 11.3915 0.0083 -6.3946 39 1 12.6546 0.3722 -5.1770 40 1 8.8140 0.5904 -5.3541 41 1 9.0039 0.7638 -3.5884 42 1 5.9491 -0.0305 -0.3969 43 1 5.9202 -0.0397 -2.1765 44 1 3.6270 -0.9717 -2.1411 45 1 3.6982 0.5612 -1.2376 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400934344.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:18 Heat of formation + Delta-G solvation = -83.264582 kcal Electronic energy + Delta-G solvation = -20886.825769 eV Core-core repulsion = 17902.344561 eV Total energy + Delta-G solvation = -2984.481208 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.52981 -39.95636 -36.69878 -35.16996 -33.68366 -31.95963 -31.58306 -29.87677 -27.88306 -25.75763 -24.23691 -23.87207 -22.99995 -21.62403 -21.11071 -20.45631 -18.83634 -17.67405 -17.30521 -16.91669 -16.22152 -16.10746 -15.85255 -15.51419 -15.23514 -14.85495 -14.75107 -14.34717 -14.18910 -13.76541 -13.49592 -13.37734 -13.25733 -13.12224 -12.70034 -12.45534 -12.22838 -12.14072 -12.03327 -11.99795 -11.69752 -11.60008 -11.54325 -11.37922 -11.21535 -10.96127 -10.76053 -10.61158 -10.59374 -9.18900 -8.30450 -6.33254 1.28215 1.33101 1.43741 2.31301 2.96808 3.04885 3.06106 3.61180 3.74730 3.94834 4.02302 4.09524 4.18507 4.26492 4.28924 4.32559 4.39530 4.44193 4.50317 4.62007 4.68045 4.68726 4.75032 4.80794 4.81358 4.84037 4.89420 4.92495 4.99037 5.00208 5.04077 5.08005 5.19690 5.24174 5.28403 5.40186 5.47478 5.52878 5.67796 5.77992 5.95766 6.19693 6.32087 6.32875 6.73942 7.31948 8.86840 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.028237 B = 0.003795 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.377970 B = 7376.476890 C = 8115.334543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.009 3.991 3 Si 0.951 3.049 4 H -0.265 1.265 5 H -0.299 1.299 6 H -0.250 1.250 7 C -0.516 4.516 8 H 0.032 0.968 9 C 0.011 3.989 10 C -0.093 4.093 11 C 0.065 3.935 12 N -0.545 5.545 13 C 0.056 3.944 14 C -0.115 4.115 15 C -0.099 4.099 16 C -0.119 4.119 17 H 0.091 0.909 18 C -0.146 4.146 19 C 0.037 3.963 20 O -0.409 6.409 21 C 0.042 3.958 22 C 0.062 3.938 23 C -0.114 4.114 24 H 0.265 0.735 25 H 0.015 0.985 26 H 0.050 0.950 27 H 0.055 0.945 28 H 0.091 0.909 29 H 0.028 0.972 30 H 0.086 0.914 31 H 0.030 0.970 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.097 0.903 38 H 0.067 0.933 39 H 0.102 0.898 40 H 0.057 0.943 41 H 0.079 0.921 42 H 0.024 0.976 43 H 0.085 0.915 44 H 0.055 0.945 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.052 -3.037 -8.941 27.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.187 4.187 3 Si 0.778 3.222 4 H -0.191 1.191 5 H -0.226 1.226 6 H -0.175 1.175 7 C -0.554 4.554 8 H 0.050 0.950 9 C -0.008 4.008 10 C -0.131 4.131 11 C -0.063 4.063 12 N -0.270 5.270 13 C -0.071 4.071 14 C -0.152 4.152 15 C -0.137 4.137 16 C -0.137 4.137 17 H 0.109 0.891 18 C -0.183 4.183 19 C -0.039 4.039 20 O -0.329 6.329 21 C -0.034 4.034 22 C -0.066 4.066 23 C -0.152 4.152 24 H 0.074 0.926 25 H 0.033 0.967 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.109 0.891 29 H 0.047 0.953 30 H 0.104 0.896 31 H 0.049 0.951 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.116 0.884 38 H 0.085 0.915 39 H 0.120 0.880 40 H 0.076 0.924 41 H 0.097 0.903 42 H 0.042 0.958 43 H 0.103 0.897 44 H 0.074 0.926 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 25.736 -2.964 -9.275 27.516 hybrid contribution -0.445 1.088 0.743 1.390 sum 25.291 -1.876 -8.532 26.757 Atomic orbital electron populations 1.70057 1.08195 1.27941 1.53130 1.25903 0.95429 1.03030 0.94369 0.85807 0.78931 0.78739 0.78727 1.19091 1.22644 1.17461 1.21423 0.91704 0.92842 1.49458 0.94986 1.19155 0.93372 0.94727 0.93531 1.21402 0.94436 0.96652 1.00617 1.22074 0.95053 0.99087 0.90081 1.61901 1.13288 1.13630 1.38140 1.22177 0.86008 1.01780 0.97125 1.21627 0.95913 1.01205 0.96484 1.21513 0.94624 1.02133 0.95430 1.22555 0.96934 0.95255 0.98974 0.89086 1.23204 0.94610 0.98550 1.01964 1.23761 0.95320 0.87851 0.96976 1.88845 1.24146 1.38345 1.81593 1.23394 0.86078 0.92580 1.01374 1.22084 0.94887 0.89286 1.00356 1.21865 0.94737 0.98502 1.00053 0.92620 0.96683 0.93086 0.92632 0.89106 0.95350 0.89568 0.95150 0.91308 0.92554 0.92032 0.90198 0.90215 0.88409 0.91519 0.88022 0.92426 0.90254 0.95774 0.89699 0.92610 0.94590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.00 13.96 21.45 0.30 -60.70 16 2 C 0.01 0.55 5.45 84.65 0.46 1.01 16 3 Si 0.95 46.23 24.36 68.60 1.67 47.91 16 4 H -0.26 -12.22 6.89 99.48 0.69 -11.53 16 5 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 6 H -0.25 -11.37 6.53 99.48 0.65 -10.72 16 7 C -0.52 -30.23 9.14 25.60 0.23 -30.00 16 8 H 0.03 2.07 7.99 -2.91 -0.02 2.04 16 9 C 0.01 0.52 1.75 -11.46 -0.02 0.50 16 10 C -0.09 -3.71 5.32 30.65 0.16 -3.55 16 11 C 0.06 2.01 5.46 86.33 0.47 2.48 16 12 N -0.54 -16.33 4.66 -896.37 -4.17 -20.50 16 13 C 0.06 1.24 4.96 86.30 0.43 1.67 16 14 C -0.11 -2.16 4.96 30.59 0.15 -2.01 16 15 C -0.10 -1.42 4.44 30.59 0.14 -1.28 16 16 C -0.12 -1.65 3.08 -9.80 -0.03 -1.68 16 17 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 18 C -0.15 -1.64 6.71 31.89 0.21 -1.43 16 19 C 0.04 0.51 7.72 72.66 0.56 1.07 16 20 O -0.41 -8.71 11.52 -148.98 -1.72 -10.43 16 21 C 0.04 0.77 6.93 72.35 0.50 1.27 16 22 C 0.06 2.07 5.29 86.33 0.46 2.52 16 23 C -0.11 -4.86 4.84 30.65 0.15 -4.71 16 24 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 25 H 0.02 0.73 7.19 -2.39 -0.02 0.71 16 26 H 0.05 2.13 8.14 -2.38 -0.02 2.11 16 27 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.09 2.34 8.01 -2.39 -0.02 2.32 16 29 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.09 1.64 7.99 -2.39 -0.02 1.62 16 31 H 0.03 0.67 8.12 -2.39 -0.02 0.65 16 32 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.06 1.16 5.15 -2.39 -0.01 1.15 16 34 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.08 0.96 8.14 -2.39 -0.02 0.95 16 36 H 0.08 0.89 7.87 -2.39 -0.02 0.87 16 37 H 0.10 0.75 8.14 -2.38 -0.02 0.73 16 38 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.08 1.53 6.70 -2.39 -0.02 1.52 16 42 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 43 H 0.08 2.50 6.21 -2.39 -0.01 2.49 16 44 H 0.06 2.49 8.14 -2.38 -0.02 2.47 16 45 H 0.04 1.60 3.38 -2.39 -0.01 1.59 16 Total: -1.00 -68.26 333.86 0.81 -67.46 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: 0.85 Total: 10.42 kcal Atomic # 6 Polarization: -38.02 SS G_CDS: 3.88 Total: -34.14 kcal Atomic # 7 Polarization: -77.33 SS G_CDS: -3.87 Total: -81.21 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: -1.72 Total: -10.43 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 1.67 Total: 47.91 kcal Total: -68.26 0.81 -67.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400934344.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.808 kcal (2) G-P(sol) polarization free energy of solvation -68.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds