Wall clock time and date at job start Mon Mar 30 2020 07:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 119.99915 * 2 1 4 4 H 1.48498 * 109.47207 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47004 * 300.00498 * 3 2 1 6 6 H 1.48501 * 109.46903 * 60.00188 * 3 2 1 7 7 C 1.37880 * 120.00520 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00289 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99418 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.50554 * 59.92393 * 9 7 2 11 11 C 1.53122 * 109.53669 * 299.82233 * 9 7 2 12 12 C 1.53119 * 109.15845 * 182.39157 * 11 9 7 13 13 C 1.53035 * 109.28236 * 57.65302 * 12 11 9 14 14 N 1.46847 * 109.52168 * 300.82026 * 13 12 11 15 15 C 1.46894 * 111.00153 * 185.84185 * 14 13 12 16 16 C 1.53005 * 109.47391 * 45.78736 * 15 14 13 17 17 C 1.52999 * 109.47288 * 180.02562 * 16 15 14 18 18 C 1.53004 * 109.46785 * 180.02562 * 17 16 15 19 19 H 1.09002 * 110.45859 * 54.29971 * 18 17 16 20 20 C 1.54508 * 110.51118 * 176.90320 * 18 17 16 21 21 C 1.54483 * 104.06393 * 118.77944 * 20 18 17 22 22 O 1.44424 * 104.80039 * 23.98041 * 21 20 18 23 23 C 1.44427 * 105.27650 * 319.48511 * 22 21 20 24 24 C 1.46846 * 111.20130 * 61.74173 * 14 13 12 25 25 H 0.96993 * 120.00493 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.51874 * 302.29197 * 11 9 7 27 27 H 1.08994 * 109.52165 * 62.48361 * 11 9 7 28 28 H 1.08995 * 109.50179 * 177.59779 * 12 11 9 29 29 H 1.09005 * 109.50125 * 297.66873 * 12 11 9 30 30 H 1.09002 * 109.46126 * 180.80712 * 13 12 11 31 31 H 1.09000 * 109.46005 * 60.83777 * 13 12 11 32 32 H 1.09006 * 109.46856 * 285.79027 * 15 14 13 33 33 H 1.08994 * 109.47717 * 165.78850 * 15 14 13 34 34 H 1.08995 * 109.46602 * 59.99893 * 16 15 14 35 35 H 1.09003 * 109.47061 * 300.00660 * 16 15 14 36 36 H 1.08996 * 109.47194 * 60.00158 * 17 16 15 37 37 H 1.08996 * 109.47165 * 299.99421 * 17 16 15 38 38 H 1.08999 * 110.51389 * 237.42673 * 20 18 17 39 39 H 1.09003 * 110.50922 * 359.97438 * 20 18 17 40 40 H 1.08995 * 110.36874 * 142.81279 * 21 20 18 41 41 H 1.08998 * 110.37268 * 265.03810 * 21 20 18 42 42 H 1.08999 * 110.37600 * 281.68204 * 23 22 21 43 43 H 1.09000 * 110.37247 * 159.34210 * 23 22 21 44 44 H 1.09001 * 109.45884 * 58.27180 * 24 14 13 45 45 H 1.08994 * 109.46523 * 178.24969 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6229 -2.5566 -0.8894 11 6 0.3741 -2.5840 1.2517 12 6 -0.3414 -3.9376 1.2733 13 6 0.6986 -5.0596 1.2358 14 7 1.5114 -4.9348 0.0191 15 6 2.4285 -6.0737 -0.1205 16 6 1.6713 -7.3748 0.1530 17 6 2.6267 -8.5611 0.0082 18 6 1.8692 -9.8621 0.2810 19 1 0.9892 -9.9319 -0.3584 20 6 2.7929 -11.0818 0.0655 21 6 2.8383 -11.7674 1.4491 22 8 1.6224 -11.3504 2.1076 23 6 1.4657 -9.9551 1.7693 24 6 2.2450 -3.6628 -0.0012 25 1 -0.4850 0.8399 0.0004 26 1 0.9978 -2.4875 2.1404 27 1 -0.3639 -1.7821 1.2346 28 1 -0.9343 -4.0213 2.1841 29 1 -0.9953 -4.0174 0.4049 30 1 0.1919 -6.0247 1.2366 31 1 1.3429 -4.9871 2.1120 32 1 3.2456 -5.9719 0.5938 33 1 2.8315 -6.0939 -1.1330 34 1 0.8542 -7.4766 -0.5612 35 1 1.2683 -7.3548 1.1656 36 1 3.4434 -8.4591 0.7226 37 1 3.0299 -8.5814 -1.0043 38 1 2.3696 -11.7545 -0.6804 39 1 3.7891 -10.7578 -0.2358 40 1 2.8557 -12.8512 1.3351 41 1 3.7102 -11.4316 2.0106 42 1 2.1260 -9.3399 2.3806 43 1 0.4286 -9.6469 1.9012 44 1 2.8820 -3.5969 0.8808 45 1 2.8613 -3.6134 -0.8988 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400951759.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:47 Heat of formation + Delta-G solvation = -68.682594 kcal Electronic energy + Delta-G solvation = -20790.247730 eV Core-core repulsion = 17806.398844 eV Total energy + Delta-G solvation = -2983.848886 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.76405 -38.36806 -35.39257 -33.55253 -31.97763 -30.68808 -29.83999 -28.69137 -25.39894 -24.99506 -23.43957 -22.31831 -21.75765 -20.44190 -20.09170 -18.58822 -16.67590 -16.42717 -15.94093 -15.79970 -15.04478 -14.89759 -14.54073 -14.07139 -13.81526 -13.34413 -13.07922 -12.98181 -12.72327 -12.39484 -12.33868 -12.00935 -11.70959 -11.59534 -11.24457 -11.05340 -10.96709 -10.92113 -10.80577 -10.70155 -10.49949 -10.39461 -10.04025 -9.97477 -9.78608 -9.43764 -8.98157 -8.66998 -8.28595 -7.60965 -5.95923 -4.01987 3.30550 3.38576 3.42234 3.73580 4.25103 4.40349 4.47041 4.57780 4.69007 4.83378 5.00348 5.04231 5.21508 5.26756 5.34156 5.42924 5.46451 5.51568 5.58208 5.66491 5.72621 5.74393 5.79653 5.84526 5.94026 6.00243 6.11131 6.26894 6.29032 6.35970 6.45878 6.54243 6.55068 6.74872 6.78205 7.00246 7.24706 7.43110 7.70858 7.77701 7.86908 8.11074 8.19764 8.50447 9.02443 9.62242 11.10143 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.047909 B = 0.003160 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.295260 B = 8859.519109 C = 9175.982808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.062 3.938 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.514 4.514 8 H 0.053 0.947 9 C 0.054 3.946 10 H 0.034 0.966 11 C -0.111 4.111 12 C -0.118 4.118 13 C 0.058 3.942 14 N -0.539 5.539 15 C 0.056 3.944 16 C -0.124 4.124 17 C -0.109 4.109 18 C -0.121 4.121 19 H 0.084 0.916 20 C -0.153 4.153 21 C 0.044 3.956 22 O -0.379 6.379 23 C 0.048 3.952 24 C 0.068 3.932 25 H 0.259 0.741 26 H 0.029 0.971 27 H 0.090 0.910 28 H 0.045 0.955 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.020 0.980 32 H 0.024 0.976 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.058 0.942 42 H 0.061 0.939 43 H 0.092 0.908 44 H 0.018 0.982 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.023 -19.767 1.522 20.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.553 4.553 8 H 0.072 0.928 9 C 0.036 3.964 10 H 0.052 0.948 11 C -0.149 4.149 12 C -0.156 4.156 13 C -0.070 4.070 14 N -0.264 5.264 15 C -0.073 4.073 16 C -0.161 4.161 17 C -0.147 4.147 18 C -0.140 4.140 19 H 0.103 0.897 20 C -0.190 4.190 21 C -0.033 4.033 22 O -0.298 6.298 23 C -0.029 4.029 24 C -0.059 4.059 25 H 0.069 0.931 26 H 0.047 0.953 27 H 0.108 0.892 28 H 0.064 0.936 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.038 0.962 32 H 0.042 0.958 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.106 0.894 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.110 0.890 44 H 0.036 0.964 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.421 -19.769 1.254 20.101 hybrid contribution 1.227 1.107 0.566 1.747 sum 4.648 -18.661 1.821 19.317 Atomic orbital electron populations 1.69900 1.05833 1.26185 1.50807 1.24940 0.94826 0.98946 0.95175 0.86580 0.80128 0.83996 0.77533 1.19875 1.21037 1.21111 1.21196 0.92845 0.90714 1.50509 0.92840 1.18666 0.92639 0.90298 0.94834 0.94796 1.21647 1.00006 0.94767 0.98442 1.21685 0.97253 0.96578 1.00098 1.22133 0.95727 0.98866 0.90275 1.62072 1.24261 1.02324 1.37710 1.22085 0.94148 0.90437 1.00599 1.21793 0.98721 0.93323 1.02310 1.21628 0.98090 0.92894 1.02082 1.22573 0.99123 0.94950 0.97317 0.89742 1.23024 1.00712 0.97236 0.98075 1.23395 0.88028 0.99993 0.91900 1.89118 1.42507 1.25290 1.72898 1.23568 1.02241 0.82962 0.94110 1.22302 0.96379 0.88596 0.98625 0.93128 0.95253 0.89172 0.93646 0.92139 0.91830 0.96174 0.95783 0.91318 0.91027 0.91631 0.91920 0.91429 0.90762 0.90331 0.89357 0.92396 0.92049 0.89006 0.96422 0.92402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.51 11.37 55.43 0.63 -24.88 16 2 C 0.06 1.73 5.31 -17.82 -0.09 1.64 16 3 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.51 -14.21 8.56 -34.44 -0.29 -14.51 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 9 C 0.05 1.38 2.26 -91.69 -0.21 1.17 16 10 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 11 C -0.11 -2.65 5.03 -26.61 -0.13 -2.78 16 12 C -0.12 -2.34 6.09 -26.65 -0.16 -2.50 16 13 C 0.06 1.02 4.85 -3.83 -0.02 1.00 16 14 N -0.54 -9.98 4.81 -234.67 -1.13 -11.11 16 15 C 0.06 0.82 5.27 -3.82 -0.02 0.79 16 16 C -0.12 -1.44 4.33 -26.73 -0.12 -1.56 16 17 C -0.11 -1.01 4.43 -26.73 -0.12 -1.13 16 18 C -0.12 -1.06 3.13 -89.05 -0.28 -1.34 16 19 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 20 C -0.15 -1.16 6.74 -25.16 -0.17 -1.33 16 21 C 0.04 0.36 7.63 37.94 0.29 0.65 16 22 O -0.38 -4.25 11.65 -35.23 -0.41 -4.66 16 23 C 0.05 0.46 6.43 37.94 0.24 0.71 16 24 C 0.07 1.47 4.65 -3.83 -0.02 1.45 16 25 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 26 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.09 2.41 6.17 -51.93 -0.32 2.09 16 28 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.06 0.96 5.81 -51.93 -0.30 0.66 16 31 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.02 0.36 8.08 -51.93 -0.42 -0.06 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.07 0.77 5.63 -51.93 -0.29 0.47 16 36 H 0.06 0.58 8.02 -51.93 -0.42 0.16 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.53 7.73 -51.93 -0.40 0.13 16 40 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.59 7.79 -51.93 -0.40 0.18 16 43 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.06 1.23 8.12 -51.93 -0.42 0.81 16 LS Contribution 340.76 15.07 5.14 5.14 Total: -1.00 -29.09 340.76 -10.33 -39.42 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -8.44 Total: -2.49 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: -1.10 Total: -17.74 kcal Atomic # 7 Polarization: -35.50 SS G_CDS: -0.50 Total: -35.99 kcal Atomic # 8 Polarization: -4.25 SS G_CDS: -0.41 Total: -4.66 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.09 -10.33 -39.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400951759.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.259 kcal (2) G-P(sol) polarization free energy of solvation -29.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds