Wall clock time and date at job start Mon Mar 30 2020 07:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 119.99915 * 2 1 4 4 H 1.48498 * 109.47207 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47004 * 300.00498 * 3 2 1 6 6 H 1.48501 * 109.46903 * 60.00188 * 3 2 1 7 7 C 1.37880 * 120.00520 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00289 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99418 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.50554 * 59.92393 * 9 7 2 11 11 C 1.53122 * 109.53669 * 299.82233 * 9 7 2 12 12 C 1.53119 * 109.15845 * 182.39157 * 11 9 7 13 13 C 1.53035 * 109.28236 * 57.65302 * 12 11 9 14 14 N 1.46847 * 109.52168 * 300.82026 * 13 12 11 15 15 C 1.46894 * 111.00153 * 185.84185 * 14 13 12 16 16 C 1.53005 * 109.47391 * 45.78736 * 15 14 13 17 17 C 1.52999 * 109.47288 * 180.02562 * 16 15 14 18 18 C 1.53004 * 109.46785 * 180.02562 * 17 16 15 19 19 H 1.09002 * 110.45859 * 54.29971 * 18 17 16 20 20 C 1.54508 * 110.51118 * 176.90320 * 18 17 16 21 21 C 1.54483 * 104.06393 * 118.77944 * 20 18 17 22 22 O 1.44424 * 104.80039 * 23.98041 * 21 20 18 23 23 C 1.44427 * 105.27650 * 319.48511 * 22 21 20 24 24 C 1.46846 * 111.20130 * 61.74173 * 14 13 12 25 25 H 0.96993 * 120.00493 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.51874 * 302.29197 * 11 9 7 27 27 H 1.08994 * 109.52165 * 62.48361 * 11 9 7 28 28 H 1.08995 * 109.50179 * 177.59779 * 12 11 9 29 29 H 1.09005 * 109.50125 * 297.66873 * 12 11 9 30 30 H 1.09002 * 109.46126 * 180.80712 * 13 12 11 31 31 H 1.09000 * 109.46005 * 60.83777 * 13 12 11 32 32 H 1.09006 * 109.46856 * 285.79027 * 15 14 13 33 33 H 1.08994 * 109.47717 * 165.78850 * 15 14 13 34 34 H 1.08995 * 109.46602 * 59.99893 * 16 15 14 35 35 H 1.09003 * 109.47061 * 300.00660 * 16 15 14 36 36 H 1.08996 * 109.47194 * 60.00158 * 17 16 15 37 37 H 1.08996 * 109.47165 * 299.99421 * 17 16 15 38 38 H 1.08999 * 110.51389 * 237.42673 * 20 18 17 39 39 H 1.09003 * 110.50922 * 359.97438 * 20 18 17 40 40 H 1.08995 * 110.36874 * 142.81279 * 21 20 18 41 41 H 1.08998 * 110.37268 * 265.03810 * 21 20 18 42 42 H 1.08999 * 110.37600 * 281.68204 * 23 22 21 43 43 H 1.09000 * 110.37247 * 159.34210 * 23 22 21 44 44 H 1.09001 * 109.45884 * 58.27180 * 24 14 13 45 45 H 1.08994 * 109.46523 * 178.24969 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6229 -2.5566 -0.8894 11 6 0.3741 -2.5840 1.2517 12 6 -0.3414 -3.9376 1.2733 13 6 0.6986 -5.0596 1.2358 14 7 1.5114 -4.9348 0.0191 15 6 2.4285 -6.0737 -0.1205 16 6 1.6713 -7.3748 0.1530 17 6 2.6267 -8.5611 0.0082 18 6 1.8692 -9.8621 0.2810 19 1 0.9892 -9.9319 -0.3584 20 6 2.7929 -11.0818 0.0655 21 6 2.8383 -11.7674 1.4491 22 8 1.6224 -11.3504 2.1076 23 6 1.4657 -9.9551 1.7693 24 6 2.2450 -3.6628 -0.0012 25 1 -0.4850 0.8399 0.0004 26 1 0.9978 -2.4875 2.1404 27 1 -0.3639 -1.7821 1.2346 28 1 -0.9343 -4.0213 2.1841 29 1 -0.9953 -4.0174 0.4049 30 1 0.1919 -6.0247 1.2366 31 1 1.3429 -4.9871 2.1120 32 1 3.2456 -5.9719 0.5938 33 1 2.8315 -6.0939 -1.1330 34 1 0.8542 -7.4766 -0.5612 35 1 1.2683 -7.3548 1.1656 36 1 3.4434 -8.4591 0.7226 37 1 3.0299 -8.5814 -1.0043 38 1 2.3696 -11.7545 -0.6804 39 1 3.7891 -10.7578 -0.2358 40 1 2.8557 -12.8512 1.3351 41 1 3.7102 -11.4316 2.0106 42 1 2.1260 -9.3399 2.3806 43 1 0.4286 -9.6469 1.9012 44 1 2.8820 -3.5969 0.8808 45 1 2.8613 -3.6134 -0.8988 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400951759.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:46 Heat of formation + Delta-G solvation = -85.839233 kcal Electronic energy + Delta-G solvation = -20790.991698 eV Core-core repulsion = 17806.398844 eV Total energy + Delta-G solvation = -2984.592854 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.51512 -39.85289 -36.61408 -35.07673 -33.54607 -31.91916 -31.35495 -29.62420 -26.97122 -26.48511 -24.47981 -23.43107 -23.33436 -21.42152 -21.12718 -20.33967 -18.42284 -17.36433 -17.01352 -16.62884 -16.55312 -16.14979 -15.84431 -15.54554 -14.95276 -14.84387 -14.42637 -14.28280 -14.07353 -13.65588 -13.48527 -13.18744 -13.11669 -12.86847 -12.72762 -12.54255 -12.33741 -12.20531 -12.00716 -11.80822 -11.71421 -11.57981 -11.46403 -11.34388 -11.21292 -10.77893 -10.72888 -10.64620 -10.37130 -9.09165 -8.08529 -6.22876 1.39708 1.41219 1.52711 2.42289 3.04402 3.15308 3.18308 3.66129 3.79720 3.92634 4.09924 4.18604 4.19644 4.29503 4.34304 4.37397 4.43830 4.51520 4.60975 4.67567 4.73652 4.74590 4.81262 4.87208 4.87820 4.90953 4.96729 4.99672 5.03450 5.10760 5.15334 5.19876 5.24181 5.36445 5.41662 5.45871 5.52648 5.63320 5.88402 5.97290 6.13168 6.21777 6.41254 6.46614 6.90217 7.45082 8.96370 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.047909 B = 0.003160 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.295260 B = 8859.519109 C = 9175.982808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.013 3.987 3 Si 0.955 3.045 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.050 0.950 9 C 0.052 3.948 10 H -0.004 1.004 11 C -0.104 4.104 12 C -0.113 4.113 13 C 0.062 3.938 14 N -0.551 5.551 15 C 0.055 3.945 16 C -0.115 4.115 17 C -0.100 4.100 18 C -0.117 4.117 19 H 0.084 0.916 20 C -0.149 4.149 21 C 0.037 3.963 22 O -0.405 6.405 23 C 0.044 3.956 24 C 0.082 3.918 25 H 0.260 0.740 26 H 0.021 0.979 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.050 0.950 30 H 0.097 0.903 31 H 0.022 0.978 32 H 0.026 0.974 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.100 0.900 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.092 0.908 44 H 0.013 0.987 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.973 -21.197 1.711 21.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.186 4.186 3 Si 0.781 3.219 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.575 4.575 8 H 0.069 0.931 9 C 0.033 3.967 10 H 0.014 0.986 11 C -0.143 4.143 12 C -0.151 4.151 13 C -0.065 4.065 14 N -0.275 5.275 15 C -0.072 4.072 16 C -0.153 4.153 17 C -0.138 4.138 18 C -0.136 4.136 19 H 0.102 0.898 20 C -0.187 4.187 21 C -0.039 4.039 22 O -0.325 6.325 23 C -0.033 4.033 24 C -0.046 4.046 25 H 0.069 0.931 26 H 0.040 0.960 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.069 0.931 30 H 0.115 0.885 31 H 0.040 0.960 32 H 0.045 0.955 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.108 0.892 40 H 0.119 0.881 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.110 0.890 44 H 0.031 0.969 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.379 -21.218 1.442 21.713 hybrid contribution 0.918 1.532 0.495 1.854 sum 5.298 -19.686 1.937 20.478 Atomic orbital electron populations 1.70041 1.07187 1.27025 1.51266 1.25738 0.95683 1.02379 0.94780 0.85555 0.79064 0.79694 0.77628 1.19157 1.20560 1.20587 1.21561 0.92962 0.92245 1.50736 0.93123 1.18590 0.93007 0.91345 0.93729 0.98582 1.21462 0.99077 0.96412 0.97309 1.21612 0.97667 0.94943 1.00843 1.22142 0.95129 0.99323 0.89924 1.62002 1.24993 1.02144 1.38392 1.22185 0.93917 0.90194 1.00934 1.21713 0.98792 0.92505 1.02263 1.21539 0.97582 0.91992 1.02665 1.22520 0.99317 0.95127 0.96655 0.89806 1.23018 1.01088 0.96696 0.97857 1.23585 0.87288 1.00919 0.92129 1.89090 1.43819 1.25972 1.73578 1.23638 1.02377 0.82545 0.94727 1.21966 0.95273 0.89149 0.98230 0.93051 0.96045 0.92466 0.91294 0.93131 0.88534 0.95967 0.95531 0.91001 0.91288 0.91399 0.91520 0.90710 0.90101 0.89191 0.88148 0.91784 0.92010 0.88989 0.96899 0.92689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.94 11.37 21.45 0.24 -53.70 16 2 C 0.01 0.73 5.31 84.66 0.45 1.17 16 3 Si 0.95 44.21 29.54 68.60 2.03 46.24 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 7 C -0.54 -30.34 8.56 25.60 0.22 -30.12 16 8 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 9 C 0.05 2.71 2.26 -11.49 -0.03 2.69 16 10 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 11 C -0.10 -5.11 5.03 30.67 0.15 -4.96 16 12 C -0.11 -4.39 6.09 30.65 0.19 -4.20 16 13 C 0.06 2.07 4.85 86.33 0.42 2.49 16 14 N -0.55 -19.79 4.81 -896.37 -4.31 -24.09 16 15 C 0.06 1.51 5.27 86.31 0.46 1.96 16 16 C -0.12 -2.38 4.33 30.60 0.13 -2.24 16 17 C -0.10 -1.58 4.43 30.60 0.14 -1.44 16 18 C -0.12 -1.77 3.13 -9.78 -0.03 -1.80 16 19 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 20 C -0.15 -1.87 6.74 31.61 0.21 -1.66 16 21 C 0.04 0.53 7.63 72.49 0.55 1.09 16 22 O -0.41 -8.45 11.65 -148.98 -1.74 -10.18 16 23 C 0.04 0.76 6.43 72.49 0.47 1.23 16 24 C 0.08 3.53 4.65 86.33 0.40 3.93 16 25 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 26 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.06 3.16 6.17 -2.39 -0.01 3.15 16 28 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.05 2.05 8.14 -2.38 -0.02 2.04 16 30 H 0.10 2.62 5.81 -2.39 -0.01 2.61 16 31 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.03 0.73 8.08 -2.38 -0.02 0.71 16 33 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.07 1.38 5.63 -2.39 -0.01 1.37 16 36 H 0.07 1.03 8.02 -2.39 -0.02 1.01 16 37 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.09 0.93 7.73 -2.39 -0.02 0.92 16 40 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.06 1.06 7.79 -2.39 -0.02 1.04 16 43 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 45 H 0.05 2.36 8.12 -2.39 -0.02 2.34 16 Total: -1.00 -63.52 340.76 0.87 -62.65 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: 0.92 Total: 10.95 kcal Atomic # 6 Polarization: -35.59 SS G_CDS: 3.73 Total: -31.86 kcal Atomic # 7 Polarization: -73.73 SS G_CDS: -4.06 Total: -77.79 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: -1.74 Total: -10.18 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -63.52 0.87 -62.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400951759.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.191 kcal (2) G-P(sol) polarization free energy of solvation -63.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds