Wall clock time and date at job start Mon Mar 30 2020 07:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99717 * 2 1 4 4 H 1.48506 * 109.47319 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47208 * 299.99762 * 3 2 1 6 6 H 1.48501 * 109.47466 * 60.00241 * 3 2 1 7 7 C 1.37878 * 120.00378 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00245 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99652 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.53814 * 300.09697 * 9 7 2 11 11 C 1.53121 * 109.50216 * 60.19613 * 9 7 2 12 12 C 1.53127 * 109.15617 * 177.59316 * 11 9 7 13 13 C 1.53036 * 109.27700 * 302.34253 * 12 11 9 14 14 N 1.46847 * 109.52098 * 59.18704 * 13 12 11 15 15 C 1.46906 * 111.00012 * 174.15796 * 14 13 12 16 16 C 1.53001 * 109.46883 * 294.20734 * 15 14 13 17 17 C 1.52997 * 109.47200 * 179.97438 * 16 15 14 18 18 C 1.52990 * 109.47247 * 179.97438 * 17 16 15 19 19 H 1.09004 * 110.43584 * 56.09217 * 18 17 16 20 20 C 1.54818 * 110.60143 * 178.71173 * 18 17 16 21 21 C 1.55000 * 102.09030 * 139.61635 * 20 18 17 22 22 O 1.44382 * 103.48861 * 322.97548 * 21 20 18 23 23 C 1.43745 * 106.97554 * 40.06459 * 22 21 20 24 24 C 1.46853 * 111.19479 * 298.25066 * 14 13 12 25 25 H 0.96993 * 120.00282 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.52062 * 297.49739 * 11 9 7 27 27 H 1.09004 * 109.52418 * 57.69164 * 11 9 7 28 28 H 1.08999 * 109.50264 * 62.29105 * 12 11 9 29 29 H 1.09004 * 109.49808 * 182.36456 * 12 11 9 30 30 H 1.08989 * 109.46828 * 299.16644 * 13 12 11 31 31 H 1.09003 * 109.45843 * 179.19219 * 13 12 11 32 32 H 1.09001 * 109.47078 * 174.20685 * 15 14 13 33 33 H 1.09001 * 109.46753 * 54.20336 * 15 14 13 34 34 H 1.08995 * 109.47310 * 59.99642 * 16 15 14 35 35 H 1.08999 * 109.46853 * 299.99870 * 16 15 14 36 36 H 1.09007 * 109.46883 * 59.99435 * 17 16 15 37 37 H 1.09004 * 109.47198 * 300.00232 * 17 16 15 38 38 H 1.08996 * 110.90598 * 257.81304 * 20 18 17 39 39 H 1.09000 * 110.90531 * 21.42158 * 20 18 17 40 40 H 1.08999 * 110.61711 * 204.48002 * 21 20 18 41 41 H 1.08997 * 110.62057 * 81.47966 * 21 20 18 42 42 H 1.08998 * 109.87927 * 92.91125 * 23 22 21 43 43 H 1.08998 * 109.87870 * 213.90748 * 23 22 21 44 44 H 1.09001 * 109.45901 * 181.76552 * 24 14 13 45 45 H 1.08999 * 109.46001 * 301.73012 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 1 0.6224 -2.5579 0.8867 11 6 0.3747 -2.5823 -1.2545 12 6 -0.3408 -3.9359 -1.2783 13 6 0.6993 -5.0579 -1.2418 14 7 1.5114 -4.9348 -0.0245 15 6 2.4285 -6.0740 0.1140 16 6 1.6212 -7.3545 0.3364 17 6 2.5763 -8.5411 0.4800 18 6 1.7691 -9.8214 0.7031 19 1 1.0536 -9.9661 -0.1064 20 6 2.7100 -11.0452 0.8199 21 6 2.0475 -11.8562 1.9626 22 8 1.5740 -10.8366 2.8686 23 6 1.0435 -9.7718 2.0617 24 6 2.2450 -3.6628 -0.0022 25 1 -0.4850 0.8400 -0.0004 26 1 -0.3632 -1.7804 -1.2367 27 1 0.9989 -2.4846 -2.1429 28 1 -0.9946 -4.0172 -0.4099 29 1 -0.9338 -4.0180 -2.1892 30 1 1.3439 -4.9843 -2.1174 31 1 0.1925 -6.0230 -1.2441 32 1 3.0883 -5.9078 0.9656 33 1 3.0243 -6.1731 -0.7934 34 1 0.9614 -7.5206 -0.5151 35 1 1.0254 -7.2553 1.2438 36 1 3.2365 -8.3751 1.3314 37 1 3.1718 -8.6400 -0.4275 38 1 2.7207 -11.6175 -0.1077 39 1 3.7180 -10.7359 1.0962 40 1 2.7805 -12.4960 2.4542 41 1 1.2151 -12.4474 1.5811 42 1 -0.0270 -9.9155 1.9157 43 1 1.2258 -8.8130 2.5469 44 1 2.8611 -3.6147 0.8958 45 1 2.8825 -3.5957 -0.8838 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400951760.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:50 Heat of formation + Delta-G solvation = -71.113350 kcal Electronic energy + Delta-G solvation = -20719.545929 eV Core-core repulsion = 17735.591637 eV Total energy + Delta-G solvation = -2983.954291 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.73225 -38.29060 -35.36309 -33.53120 -31.99313 -30.70293 -29.84334 -28.69034 -25.44421 -24.94327 -23.32720 -22.15519 -21.68004 -20.51046 -20.16987 -18.56947 -16.90536 -16.43067 -16.16463 -15.21667 -15.08138 -14.95100 -14.55923 -13.99711 -13.67017 -13.35981 -13.15943 -12.90399 -12.66817 -12.36742 -12.34913 -12.06986 -11.66848 -11.52686 -11.39687 -10.96061 -10.95590 -10.92941 -10.81587 -10.67349 -10.52092 -10.38071 -10.00579 -9.83986 -9.81091 -9.44186 -8.97447 -8.67012 -8.28353 -7.61880 -5.95504 -4.01510 3.30981 3.38997 3.42705 3.74293 4.22803 4.37345 4.46729 4.65817 4.66273 4.93284 4.97461 5.10831 5.22949 5.30232 5.34631 5.44029 5.50029 5.53314 5.63794 5.70380 5.72279 5.78892 5.80150 5.90246 5.93357 6.02239 6.11249 6.26188 6.32703 6.42191 6.46289 6.54639 6.67205 6.74714 6.78483 7.00372 7.24947 7.43447 7.71135 7.78208 7.87415 8.11444 8.20110 8.50906 9.02913 9.62704 11.10572 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.040774 B = 0.003139 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.551842 B = 8918.403101 C = 9111.060839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.062 3.938 3 Si 0.890 3.110 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.514 4.514 8 H 0.053 0.947 9 C 0.054 3.946 10 H 0.034 0.966 11 C -0.111 4.111 12 C -0.118 4.118 13 C 0.062 3.938 14 N -0.539 5.539 15 C 0.055 3.945 16 C -0.118 4.118 17 C -0.109 4.109 18 C -0.121 4.121 19 H 0.082 0.918 20 C -0.152 4.152 21 C 0.045 3.955 22 O -0.381 6.381 23 C 0.048 3.952 24 C 0.068 3.932 25 H 0.259 0.741 26 H 0.090 0.910 27 H 0.029 0.971 28 H 0.060 0.940 29 H 0.045 0.955 30 H 0.020 0.980 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.023 0.977 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.058 0.942 42 H 0.057 0.943 43 H 0.091 0.909 44 H 0.058 0.942 45 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.837 -20.407 -0.621 20.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.552 4.552 8 H 0.072 0.928 9 C 0.036 3.964 10 H 0.052 0.948 11 C -0.149 4.149 12 C -0.156 4.156 13 C -0.066 4.066 14 N -0.264 5.264 15 C -0.073 4.073 16 C -0.156 4.156 17 C -0.147 4.147 18 C -0.140 4.140 19 H 0.100 0.900 20 C -0.190 4.190 21 C -0.032 4.032 22 O -0.300 6.300 23 C -0.029 4.029 24 C -0.059 4.059 25 H 0.069 0.931 26 H 0.108 0.892 27 H 0.047 0.953 28 H 0.079 0.921 29 H 0.063 0.937 30 H 0.038 0.962 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.041 0.959 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.108 0.892 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.109 0.891 44 H 0.076 0.924 45 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 2.378 -20.277 0.011 20.416 hybrid contribution 1.002 0.948 -1.078 1.751 sum 3.380 -19.329 -1.068 19.651 Atomic orbital electron populations 1.69903 1.05830 1.26177 1.50829 1.24940 0.94829 0.98948 0.95180 0.86579 0.80130 0.83992 0.77526 1.19874 1.21122 1.21034 1.21198 0.92850 0.90714 1.50480 0.92835 1.18666 0.92646 0.90309 0.94820 0.94772 1.21652 1.00013 0.94740 0.98463 1.21679 0.97227 0.96561 1.00093 1.22059 0.95717 0.98682 0.90173 1.62002 1.24343 1.02324 1.37687 1.22057 0.94443 0.90951 0.99847 1.21671 0.98168 0.93145 1.02583 1.21605 0.97969 0.93035 1.02075 1.22569 0.97736 0.95509 0.98156 0.89978 1.23223 1.00024 0.96408 0.99336 1.23536 0.97717 0.91413 0.90506 1.88879 1.80547 1.29785 1.30773 1.23349 0.97145 0.91642 0.90740 1.22302 0.96385 0.88589 0.98630 0.93136 0.89160 0.95251 0.92124 0.93663 0.96154 0.92276 0.91316 0.95865 0.92006 0.91016 0.91509 0.91834 0.90371 0.90301 0.89203 0.92384 0.92468 0.89111 0.92364 0.96467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.54 11.36 55.43 0.63 -24.91 16 2 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 3 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.51 -14.23 8.56 -34.44 -0.29 -14.52 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.05 1.38 2.26 -91.69 -0.21 1.17 16 10 H 0.03 0.96 8.14 -51.93 -0.42 0.54 16 11 C -0.11 -2.65 5.03 -26.60 -0.13 -2.79 16 12 C -0.12 -2.33 6.09 -26.65 -0.16 -2.49 16 13 C 0.06 1.09 5.29 -3.83 -0.02 1.07 16 14 N -0.54 -10.02 4.66 -234.67 -1.09 -11.11 16 15 C 0.06 0.82 4.96 -3.82 -0.02 0.80 16 16 C -0.12 -1.41 4.96 -26.73 -0.13 -1.54 16 17 C -0.11 -1.06 4.45 -26.74 -0.12 -1.18 16 18 C -0.12 -1.07 3.08 -89.09 -0.27 -1.34 16 19 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 20 C -0.15 -1.16 6.71 -24.72 -0.17 -1.33 16 21 C 0.04 0.37 7.72 38.21 0.29 0.66 16 22 O -0.38 -4.39 11.52 -35.23 -0.41 -4.80 16 23 C 0.05 0.49 6.92 37.73 0.26 0.75 16 24 C 0.07 1.47 4.68 -3.83 -0.02 1.45 16 25 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 26 H 0.09 2.41 6.16 -51.93 -0.32 2.09 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.91 6.21 -51.93 -0.32 0.59 16 32 H 0.07 1.01 7.99 -51.93 -0.41 0.60 16 33 H 0.02 0.34 8.12 -51.93 -0.42 -0.08 16 34 H 0.06 0.74 6.43 -51.93 -0.33 0.41 16 35 H 0.07 0.91 6.87 -51.93 -0.36 0.55 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.61 7.88 -51.93 -0.41 0.20 16 40 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.09 0.96 6.72 -51.93 -0.35 0.62 16 44 H 0.06 1.25 8.02 -51.93 -0.42 0.83 16 45 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 340.71 15.07 5.13 5.13 Total: -1.00 -29.10 340.71 -10.22 -39.32 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -8.38 Total: -2.36 kcal Atomic # 6 Polarization: -16.56 SS G_CDS: -1.09 Total: -17.65 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: -0.46 Total: -36.02 kcal Atomic # 8 Polarization: -4.39 SS G_CDS: -0.41 Total: -4.80 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.10 -10.22 -39.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400951760.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.791 kcal (2) G-P(sol) polarization free energy of solvation -29.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds