Wall clock time and date at job start Mon Mar 30 2020 07:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99717 * 2 1 4 4 H 1.48506 * 109.47319 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47208 * 299.99762 * 3 2 1 6 6 H 1.48501 * 109.47466 * 60.00241 * 3 2 1 7 7 C 1.37878 * 120.00378 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00245 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99652 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.53814 * 300.09697 * 9 7 2 11 11 C 1.53121 * 109.50216 * 60.19613 * 9 7 2 12 12 C 1.53127 * 109.15617 * 177.59316 * 11 9 7 13 13 C 1.53036 * 109.27700 * 302.34253 * 12 11 9 14 14 N 1.46847 * 109.52098 * 59.18704 * 13 12 11 15 15 C 1.46906 * 111.00012 * 174.15796 * 14 13 12 16 16 C 1.53001 * 109.46883 * 294.20734 * 15 14 13 17 17 C 1.52997 * 109.47200 * 179.97438 * 16 15 14 18 18 C 1.52990 * 109.47247 * 179.97438 * 17 16 15 19 19 H 1.09004 * 110.43584 * 56.09217 * 18 17 16 20 20 C 1.54818 * 110.60143 * 178.71173 * 18 17 16 21 21 C 1.55000 * 102.09030 * 139.61635 * 20 18 17 22 22 O 1.44382 * 103.48861 * 322.97548 * 21 20 18 23 23 C 1.43745 * 106.97554 * 40.06459 * 22 21 20 24 24 C 1.46853 * 111.19479 * 298.25066 * 14 13 12 25 25 H 0.96993 * 120.00282 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.52062 * 297.49739 * 11 9 7 27 27 H 1.09004 * 109.52418 * 57.69164 * 11 9 7 28 28 H 1.08999 * 109.50264 * 62.29105 * 12 11 9 29 29 H 1.09004 * 109.49808 * 182.36456 * 12 11 9 30 30 H 1.08989 * 109.46828 * 299.16644 * 13 12 11 31 31 H 1.09003 * 109.45843 * 179.19219 * 13 12 11 32 32 H 1.09001 * 109.47078 * 174.20685 * 15 14 13 33 33 H 1.09001 * 109.46753 * 54.20336 * 15 14 13 34 34 H 1.08995 * 109.47310 * 59.99642 * 16 15 14 35 35 H 1.08999 * 109.46853 * 299.99870 * 16 15 14 36 36 H 1.09007 * 109.46883 * 59.99435 * 17 16 15 37 37 H 1.09004 * 109.47198 * 300.00232 * 17 16 15 38 38 H 1.08996 * 110.90598 * 257.81304 * 20 18 17 39 39 H 1.09000 * 110.90531 * 21.42158 * 20 18 17 40 40 H 1.08999 * 110.61711 * 204.48002 * 21 20 18 41 41 H 1.08997 * 110.62057 * 81.47966 * 21 20 18 42 42 H 1.08998 * 109.87927 * 92.91125 * 23 22 21 43 43 H 1.08998 * 109.87870 * 213.90748 * 23 22 21 44 44 H 1.09001 * 109.45901 * 181.76552 * 24 14 13 45 45 H 1.08999 * 109.46001 * 301.73012 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 1 0.6224 -2.5579 0.8867 11 6 0.3747 -2.5823 -1.2545 12 6 -0.3408 -3.9359 -1.2783 13 6 0.6993 -5.0579 -1.2418 14 7 1.5114 -4.9348 -0.0245 15 6 2.4285 -6.0740 0.1140 16 6 1.6212 -7.3545 0.3364 17 6 2.5763 -8.5411 0.4800 18 6 1.7691 -9.8214 0.7031 19 1 1.0536 -9.9661 -0.1064 20 6 2.7100 -11.0452 0.8199 21 6 2.0475 -11.8562 1.9626 22 8 1.5740 -10.8366 2.8686 23 6 1.0435 -9.7718 2.0617 24 6 2.2450 -3.6628 -0.0022 25 1 -0.4850 0.8400 -0.0004 26 1 -0.3632 -1.7804 -1.2367 27 1 0.9989 -2.4846 -2.1429 28 1 -0.9946 -4.0172 -0.4099 29 1 -0.9338 -4.0180 -2.1892 30 1 1.3439 -4.9843 -2.1174 31 1 0.1925 -6.0230 -1.2441 32 1 3.0883 -5.9078 0.9656 33 1 3.0243 -6.1731 -0.7934 34 1 0.9614 -7.5206 -0.5151 35 1 1.0254 -7.2553 1.2438 36 1 3.2365 -8.3751 1.3314 37 1 3.1718 -8.6400 -0.4275 38 1 2.7207 -11.6175 -0.1077 39 1 3.7180 -10.7359 1.0962 40 1 2.7805 -12.4960 2.4542 41 1 1.2151 -12.4474 1.5811 42 1 -0.0270 -9.9155 1.9157 43 1 1.2258 -8.8130 2.5469 44 1 2.8611 -3.6147 0.8958 45 1 2.8825 -3.5957 -0.8838 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400951760.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:49 Heat of formation + Delta-G solvation = -88.197175 kcal Electronic energy + Delta-G solvation = -20720.286739 eV Core-core repulsion = 17735.591637 eV Total energy + Delta-G solvation = -2984.695102 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.48957 -39.81322 -36.57692 -35.09479 -33.54146 -31.86934 -31.46053 -29.63750 -26.94353 -26.53337 -24.39431 -23.39851 -23.15546 -21.60270 -21.06986 -20.35273 -18.42692 -17.61137 -17.04488 -16.72214 -16.31651 -16.13712 -15.83373 -15.44024 -14.99892 -14.72930 -14.52929 -14.21735 -13.92551 -13.71209 -13.52651 -13.37961 -12.92475 -12.85239 -12.67792 -12.53655 -12.43201 -12.22843 -11.96787 -11.81191 -11.68620 -11.59987 -11.53610 -11.35464 -11.27842 -10.76320 -10.65484 -10.57908 -10.37491 -9.10729 -8.08552 -6.22845 1.39636 1.41168 1.52647 2.42272 3.05263 3.11446 3.18262 3.63702 3.75092 3.97177 4.11093 4.18550 4.24633 4.29638 4.32569 4.39076 4.45523 4.54772 4.62207 4.63340 4.75710 4.76968 4.81838 4.84911 4.90723 4.92248 4.98984 5.00164 5.04561 5.07994 5.13785 5.19597 5.24110 5.38874 5.43914 5.46598 5.53221 5.63425 5.97277 5.98511 6.13068 6.21900 6.41275 6.46691 6.90187 7.45076 8.96346 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.040774 B = 0.003139 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.551842 B = 8918.403101 C = 9111.060839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.013 3.987 3 Si 0.955 3.045 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.050 0.950 9 C 0.052 3.948 10 H -0.004 1.004 11 C -0.104 4.104 12 C -0.112 4.112 13 C 0.066 3.934 14 N -0.551 5.551 15 C 0.055 3.945 16 C -0.108 4.108 17 C -0.101 4.101 18 C -0.117 4.117 19 H 0.093 0.907 20 C -0.147 4.147 21 C 0.038 3.962 22 O -0.409 6.409 23 C 0.044 3.956 24 C 0.081 3.919 25 H 0.260 0.740 26 H 0.057 0.943 27 H 0.021 0.979 28 H 0.050 0.950 29 H 0.069 0.931 30 H 0.023 0.977 31 H 0.092 0.908 32 H 0.066 0.934 33 H 0.031 0.969 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.074 0.926 38 H 0.097 0.903 39 H 0.077 0.923 40 H 0.101 0.899 41 H 0.069 0.931 42 H 0.061 0.939 43 H 0.079 0.921 44 H 0.054 0.946 45 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.564 -22.098 -1.610 22.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.186 4.186 3 Si 0.781 3.219 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.575 4.575 8 H 0.069 0.931 9 C 0.033 3.967 10 H 0.014 0.986 11 C -0.143 4.143 12 C -0.150 4.150 13 C -0.062 4.062 14 N -0.275 5.275 15 C -0.072 4.072 16 C -0.146 4.146 17 C -0.139 4.139 18 C -0.136 4.136 19 H 0.111 0.889 20 C -0.185 4.185 21 C -0.038 4.038 22 O -0.329 6.329 23 C -0.033 4.033 24 C -0.046 4.046 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.040 0.960 28 H 0.068 0.932 29 H 0.088 0.912 30 H 0.041 0.959 31 H 0.110 0.890 32 H 0.085 0.915 33 H 0.049 0.951 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.116 0.884 39 H 0.095 0.905 40 H 0.119 0.881 41 H 0.087 0.913 42 H 0.079 0.921 43 H 0.097 0.903 44 H 0.072 0.928 45 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges 3.113 -21.990 -0.979 22.231 hybrid contribution 0.756 1.452 -0.736 1.795 sum 3.869 -20.537 -1.715 20.969 Atomic orbital electron populations 1.70043 1.07176 1.27020 1.51272 1.25736 0.95688 1.02372 0.94781 0.85556 0.79054 0.79697 0.77633 1.19183 1.20537 1.20590 1.21561 0.92958 0.92256 1.50730 0.93143 1.18588 0.93006 0.91329 0.93741 0.98619 1.21465 0.99083 0.96413 0.97306 1.21599 0.97610 0.94880 1.00862 1.22064 0.95127 0.99181 0.89807 1.61949 1.25042 1.02081 1.38440 1.22156 0.94347 0.90616 1.00121 1.21587 0.98203 0.92422 1.02404 1.21518 0.97507 0.92467 1.02366 1.22539 0.97969 0.95482 0.97561 0.88876 1.23215 0.99456 0.95842 0.99961 1.23754 0.98478 0.91096 0.90471 1.88847 1.80883 1.30792 1.32401 1.23392 0.97585 0.90997 0.91324 1.21967 0.95291 0.89165 0.98210 0.93052 0.92443 0.95976 0.93159 0.91217 0.95854 0.88959 0.91537 0.95080 0.91307 0.91877 0.92054 0.90763 0.88402 0.90462 0.88079 0.91298 0.92107 0.90283 0.92779 0.96867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.02 11.36 21.45 0.24 -53.78 16 2 C 0.01 0.73 5.30 84.65 0.45 1.18 16 3 Si 0.95 44.35 29.54 68.60 2.03 46.37 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 7 C -0.54 -30.43 8.56 25.60 0.22 -30.21 16 8 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 9 C 0.05 2.73 2.26 -11.49 -0.03 2.70 16 10 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 11 C -0.10 -5.11 5.03 30.68 0.15 -4.96 16 12 C -0.11 -4.33 6.09 30.65 0.19 -4.15 16 13 C 0.07 2.19 5.29 86.33 0.46 2.65 16 14 N -0.55 -19.91 4.66 -896.34 -4.17 -24.08 16 15 C 0.06 1.54 4.96 86.30 0.43 1.97 16 16 C -0.11 -2.34 4.96 30.59 0.15 -2.19 16 17 C -0.10 -1.71 4.45 30.59 0.14 -1.57 16 18 C -0.12 -1.76 3.08 -9.81 -0.03 -1.79 16 19 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 20 C -0.15 -1.84 6.71 31.90 0.21 -1.63 16 21 C 0.04 0.55 7.72 72.67 0.56 1.11 16 22 O -0.41 -9.01 11.52 -148.98 -1.72 -10.73 16 23 C 0.04 0.83 6.92 72.35 0.50 1.33 16 24 C 0.08 3.54 4.68 86.32 0.40 3.95 16 25 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 26 H 0.06 3.17 6.16 -2.39 -0.01 3.16 16 27 H 0.02 1.07 8.14 -2.38 -0.02 1.05 16 28 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.09 2.51 6.21 -2.39 -0.01 2.50 16 32 H 0.07 1.88 7.99 -2.39 -0.02 1.86 16 33 H 0.03 0.83 8.12 -2.39 -0.02 0.81 16 34 H 0.07 1.41 6.43 -2.39 -0.02 1.39 16 35 H 0.06 1.49 6.87 -2.39 -0.02 1.48 16 36 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 37 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 38 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.08 1.00 7.88 -2.39 -0.02 0.98 16 40 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.08 1.65 6.72 -2.39 -0.02 1.63 16 44 H 0.05 2.35 8.02 -2.39 -0.02 2.33 16 45 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 Total: -1.00 -63.85 340.71 1.11 -62.74 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: 0.92 Total: 11.09 kcal Atomic # 6 Polarization: -35.43 SS G_CDS: 3.81 Total: -31.62 kcal Atomic # 7 Polarization: -73.93 SS G_CDS: -3.93 Total: -77.86 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: -1.72 Total: -10.73 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.37 kcal Total: -63.85 1.11 -62.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400951760.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.453 kcal (2) G-P(sol) polarization free energy of solvation -63.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds