Wall clock time and date at job start Mon Mar 30 2020 07:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99908 * 2 1 4 4 H 1.48497 * 109.47524 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46998 * 299.99937 * 3 2 1 6 6 H 1.48503 * 109.47187 * 59.99425 * 3 2 1 7 7 C 1.37879 * 120.00264 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99919 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99720 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.53902 * 300.09346 * 9 7 2 11 11 C 1.53124 * 109.50413 * 60.19389 * 9 7 2 12 12 C 1.53123 * 109.15980 * 177.59292 * 11 9 7 13 13 C 1.53036 * 109.27788 * 302.34618 * 12 11 9 14 14 N 1.46846 * 109.52384 * 59.18000 * 13 12 11 15 15 C 1.46903 * 110.99717 * 174.15896 * 14 13 12 16 16 C 1.53000 * 109.47039 * 66.04791 * 15 14 13 17 17 C 1.52996 * 109.46834 * 179.97438 * 16 15 14 18 18 C 1.53007 * 109.47133 * 179.97438 * 17 16 15 19 19 H 1.08994 * 110.43762 * 303.91625 * 18 17 16 20 20 C 1.54808 * 110.48712 * 181.21950 * 18 17 16 21 21 C 1.55002 * 102.08949 * 220.44380 * 20 18 17 22 22 O 1.44378 * 103.49080 * 37.03428 * 21 20 18 23 23 C 1.43751 * 106.97167 * 319.93056 * 22 21 20 24 24 C 1.46842 * 111.19700 * 298.25435 * 14 13 12 25 25 H 0.97003 * 120.00342 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.52368 * 57.68928 * 11 9 7 27 27 H 1.08997 * 109.52219 * 297.49804 * 11 9 7 28 28 H 1.09000 * 109.50367 * 182.40163 * 12 11 9 29 29 H 1.09006 * 109.50264 * 62.28502 * 12 11 9 30 30 H 1.08999 * 109.46075 * 179.19317 * 13 12 11 31 31 H 1.08994 * 109.46383 * 299.17045 * 13 12 11 32 32 H 1.09007 * 109.46443 * 186.04380 * 15 14 13 33 33 H 1.08994 * 109.47048 * 306.04358 * 15 14 13 34 34 H 1.08997 * 109.46962 * 299.99913 * 16 15 14 35 35 H 1.08997 * 109.47270 * 59.99434 * 16 15 14 36 36 H 1.08997 * 109.47588 * 299.99913 * 17 16 15 37 37 H 1.09006 * 109.47151 * 60.00391 * 17 16 15 38 38 H 1.08999 * 110.91276 * 338.64687 * 20 18 17 39 39 H 1.09000 * 110.90471 * 102.25272 * 20 18 17 40 40 H 1.08996 * 110.61876 * 278.52400 * 21 20 18 41 41 H 1.09008 * 110.61141 * 155.52768 * 21 20 18 42 42 H 1.08996 * 109.88126 * 267.09921 * 23 22 21 43 43 H 1.08996 * 109.87808 * 145.94077 * 23 22 21 44 44 H 1.09006 * 109.46447 * 181.75636 * 24 14 13 45 45 H 1.08991 * 109.46739 * 301.74021 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6224 -2.5571 0.8891 11 6 0.3746 -2.5834 -1.2522 12 6 -0.3409 -3.9370 -1.2748 13 6 0.6991 -5.0590 -1.2372 14 7 1.5113 -4.9348 -0.0202 15 6 2.4284 -6.0739 0.1192 16 6 3.4589 -6.0403 -1.0112 17 6 4.4144 -7.2263 -0.8656 18 6 5.4446 -7.1931 -1.9964 19 1 4.9459 -7.1843 -2.9655 20 6 6.4060 -8.4017 -1.8892 21 6 7.7731 -7.7614 -2.2406 22 8 7.6984 -6.4536 -1.6334 23 6 6.3643 -5.9650 -1.8520 24 6 2.2449 -3.6629 0.0010 25 1 -0.4851 0.8400 -0.0004 26 1 0.9987 -2.4865 -2.1406 27 1 -0.3634 -1.7815 -1.2351 28 1 -0.9335 -4.0203 -2.1859 29 1 -0.9947 -4.0176 -0.4062 30 1 0.1924 -6.0241 -1.2387 31 1 1.3438 -4.9860 -2.1130 32 1 2.9403 -6.0127 1.0796 33 1 1.8627 -7.0041 0.0676 34 1 2.9470 -6.1014 -1.9715 35 1 4.0245 -5.1100 -0.9596 36 1 4.9263 -7.1648 0.0947 37 1 3.8490 -8.1568 -0.9170 38 1 6.4137 -8.8040 -0.8762 39 1 6.1413 -9.1744 -2.6111 40 1 7.8910 -7.6769 -3.3209 41 1 8.5900 -8.3392 -1.8082 42 1 6.3326 -5.3691 -2.7641 43 1 6.0465 -5.3619 -1.0015 44 1 2.8610 -3.6139 0.8989 45 1 2.8822 -3.5964 -0.8807 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400951764.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:55 Heat of formation + Delta-G solvation = -70.056274 kcal Electronic energy + Delta-G solvation = -21135.870330 eV Core-core repulsion = 18151.961877 eV Total energy + Delta-G solvation = -2983.908453 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.71589 -38.46454 -35.25134 -33.51269 -32.01361 -30.51594 -29.83874 -28.55214 -25.36525 -24.91915 -23.56265 -22.27262 -21.45487 -20.65681 -20.38043 -18.24556 -16.86553 -16.42590 -16.13134 -15.14307 -15.02864 -14.81208 -14.36401 -14.04607 -14.02113 -13.25688 -13.10670 -12.95039 -12.57819 -12.38512 -12.27019 -11.93325 -11.70526 -11.53081 -11.36144 -11.03061 -10.93725 -10.88417 -10.80163 -10.72657 -10.60911 -10.28598 -9.98237 -9.78957 -9.78051 -9.43466 -8.99810 -8.66573 -8.27871 -7.55580 -5.94966 -4.00904 3.31590 3.39738 3.43653 3.79266 4.30700 4.43281 4.49350 4.66236 4.70146 4.96574 5.01373 5.10180 5.27596 5.30876 5.35213 5.47132 5.50326 5.58490 5.67161 5.71734 5.74531 5.77892 5.82418 5.92554 5.95843 6.06110 6.10126 6.19655 6.37693 6.40705 6.49459 6.56253 6.72465 6.75643 6.79604 7.01516 7.25024 7.43823 7.71319 7.78724 7.87828 8.11936 8.20623 8.51453 9.03621 9.63431 11.11099 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.019847 B = 0.004373 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.420922 B = 6401.739051 C = 7489.245507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.513 4.513 8 H 0.053 0.947 9 C 0.053 3.947 10 H 0.033 0.967 11 C -0.110 4.110 12 C -0.118 4.118 13 C 0.062 3.938 14 N -0.538 5.538 15 C 0.057 3.943 16 C -0.162 4.162 17 C -0.104 4.104 18 C -0.122 4.122 19 H 0.081 0.919 20 C -0.151 4.151 21 C 0.045 3.955 22 O -0.380 6.380 23 C 0.048 3.952 24 C 0.066 3.934 25 H 0.258 0.742 26 H 0.028 0.972 27 H 0.090 0.910 28 H 0.045 0.955 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.024 0.976 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.058 0.942 41 H 0.090 0.910 42 H 0.057 0.943 43 H 0.090 0.910 44 H 0.057 0.943 45 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.425 -16.429 -4.719 19.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.138 4.138 3 Si 0.717 3.283 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.552 4.552 8 H 0.072 0.928 9 C 0.034 3.966 10 H 0.051 0.949 11 C -0.148 4.148 12 C -0.156 4.156 13 C -0.066 4.066 14 N -0.260 5.260 15 C -0.072 4.072 16 C -0.201 4.201 17 C -0.142 4.142 18 C -0.141 4.141 19 H 0.099 0.901 20 C -0.189 4.189 21 C -0.032 4.032 22 O -0.299 6.299 23 C -0.029 4.029 24 C -0.061 4.061 25 H 0.068 0.932 26 H 0.047 0.953 27 H 0.108 0.892 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.042 0.958 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.076 0.924 41 H 0.108 0.892 42 H 0.076 0.924 43 H 0.108 0.892 44 H 0.075 0.925 45 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 8.106 -16.179 -4.195 18.576 hybrid contribution 0.817 0.815 -0.963 1.503 sum 8.923 -15.364 -5.158 18.500 Atomic orbital electron populations 1.69905 1.05835 1.26155 1.50858 1.24933 0.94811 0.98928 0.95177 0.86593 0.80171 0.84033 0.77528 1.19847 1.21122 1.21042 1.21194 0.92844 0.90703 1.50448 0.92830 1.18680 0.92691 0.90421 0.94776 0.94867 1.21643 0.99998 0.94698 0.98456 1.21688 0.97261 0.96600 1.00085 1.22020 0.95501 0.98478 0.90583 1.62217 1.23748 1.02602 1.37468 1.22182 0.92895 0.94589 0.97549 1.22364 0.98317 0.98723 1.00736 1.21561 0.96177 0.98842 0.97626 1.22596 0.96629 0.94460 1.00416 0.90068 1.23217 0.94918 0.97934 1.02843 1.23537 0.97774 0.84207 0.97690 1.88883 1.30517 1.32480 1.78033 1.23351 0.81580 0.96022 1.01943 1.22311 0.96462 0.88559 0.98736 0.93156 0.95267 0.89197 0.93673 0.92161 0.92676 0.95754 0.91249 0.91767 0.92008 0.91162 0.91564 0.91815 0.90314 0.90410 0.92406 0.89207 0.92430 0.89200 0.92460 0.95959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.52 11.36 55.43 0.63 -24.89 16 2 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 3 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.51 -14.15 8.56 -34.44 -0.29 -14.45 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 9 C 0.05 1.34 2.26 -91.69 -0.21 1.13 16 10 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 11 C -0.11 -2.62 5.03 -26.60 -0.13 -2.75 16 12 C -0.12 -2.34 6.09 -26.65 -0.16 -2.50 16 13 C 0.06 1.09 5.05 -3.83 -0.02 1.07 16 14 N -0.54 -9.87 4.86 -234.68 -1.14 -11.01 16 15 C 0.06 0.82 5.36 -3.82 -0.02 0.80 16 16 C -0.16 -2.10 4.34 -26.73 -0.12 -2.21 16 17 C -0.10 -1.08 4.44 -26.73 -0.12 -1.20 16 18 C -0.12 -1.21 3.09 -89.08 -0.27 -1.49 16 19 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 20 C -0.15 -1.26 6.71 -24.72 -0.17 -1.43 16 21 C 0.04 0.41 7.72 38.21 0.29 0.70 16 22 O -0.38 -4.86 11.52 -35.23 -0.41 -5.27 16 23 C 0.05 0.56 6.93 37.74 0.26 0.82 16 24 C 0.07 1.40 4.06 -3.83 -0.02 1.39 16 25 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 26 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.09 2.40 6.17 -51.93 -0.32 2.08 16 28 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.05 0.85 8.06 -51.93 -0.42 0.43 16 31 H 0.02 0.42 6.75 -51.93 -0.35 0.07 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.06 0.84 8.06 -51.93 -0.42 0.42 16 34 H 0.06 0.82 6.68 -51.93 -0.35 0.48 16 35 H 0.07 1.02 5.23 -51.93 -0.27 0.75 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.65 7.87 -51.93 -0.41 0.24 16 39 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.09 0.68 8.14 -51.92 -0.42 0.26 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.09 1.13 6.70 -51.93 -0.35 0.78 16 44 H 0.06 1.22 8.12 -51.93 -0.42 0.79 16 45 H 0.02 0.47 6.61 -51.93 -0.34 0.13 16 LS Contribution 337.54 15.07 5.09 5.09 Total: -1.00 -28.97 337.54 -10.18 -39.15 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -8.26 Total: -0.98 kcal Atomic # 6 Polarization: -17.40 SS G_CDS: -1.07 Total: -18.47 kcal Atomic # 7 Polarization: -35.39 SS G_CDS: -0.51 Total: -35.90 kcal Atomic # 8 Polarization: -4.86 SS G_CDS: -0.41 Total: -5.27 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.97 -10.18 -39.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400951764.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.907 kcal (2) G-P(sol) polarization free energy of solvation -28.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds