Wall clock time and date at job start Mon Mar 30 2020 07:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99908 * 2 1 4 4 H 1.48497 * 109.47524 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46998 * 299.99937 * 3 2 1 6 6 H 1.48503 * 109.47187 * 59.99425 * 3 2 1 7 7 C 1.37879 * 120.00264 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99919 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99720 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.53902 * 300.09346 * 9 7 2 11 11 C 1.53124 * 109.50413 * 60.19389 * 9 7 2 12 12 C 1.53123 * 109.15980 * 177.59292 * 11 9 7 13 13 C 1.53036 * 109.27788 * 302.34618 * 12 11 9 14 14 N 1.46846 * 109.52384 * 59.18000 * 13 12 11 15 15 C 1.46903 * 110.99717 * 174.15896 * 14 13 12 16 16 C 1.53000 * 109.47039 * 66.04791 * 15 14 13 17 17 C 1.52996 * 109.46834 * 179.97438 * 16 15 14 18 18 C 1.53007 * 109.47133 * 179.97438 * 17 16 15 19 19 H 1.08994 * 110.43762 * 303.91625 * 18 17 16 20 20 C 1.54808 * 110.48712 * 181.21950 * 18 17 16 21 21 C 1.55002 * 102.08949 * 220.44380 * 20 18 17 22 22 O 1.44378 * 103.49080 * 37.03428 * 21 20 18 23 23 C 1.43751 * 106.97167 * 319.93056 * 22 21 20 24 24 C 1.46842 * 111.19700 * 298.25435 * 14 13 12 25 25 H 0.97003 * 120.00342 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.52368 * 57.68928 * 11 9 7 27 27 H 1.08997 * 109.52219 * 297.49804 * 11 9 7 28 28 H 1.09000 * 109.50367 * 182.40163 * 12 11 9 29 29 H 1.09006 * 109.50264 * 62.28502 * 12 11 9 30 30 H 1.08999 * 109.46075 * 179.19317 * 13 12 11 31 31 H 1.08994 * 109.46383 * 299.17045 * 13 12 11 32 32 H 1.09007 * 109.46443 * 186.04380 * 15 14 13 33 33 H 1.08994 * 109.47048 * 306.04358 * 15 14 13 34 34 H 1.08997 * 109.46962 * 299.99913 * 16 15 14 35 35 H 1.08997 * 109.47270 * 59.99434 * 16 15 14 36 36 H 1.08997 * 109.47588 * 299.99913 * 17 16 15 37 37 H 1.09006 * 109.47151 * 60.00391 * 17 16 15 38 38 H 1.08999 * 110.91276 * 338.64687 * 20 18 17 39 39 H 1.09000 * 110.90471 * 102.25272 * 20 18 17 40 40 H 1.08996 * 110.61876 * 278.52400 * 21 20 18 41 41 H 1.09008 * 110.61141 * 155.52768 * 21 20 18 42 42 H 1.08996 * 109.88126 * 267.09921 * 23 22 21 43 43 H 1.08996 * 109.87808 * 145.94077 * 23 22 21 44 44 H 1.09006 * 109.46447 * 181.75636 * 24 14 13 45 45 H 1.08991 * 109.46739 * 301.74021 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6224 -2.5571 0.8891 11 6 0.3746 -2.5834 -1.2522 12 6 -0.3409 -3.9370 -1.2748 13 6 0.6991 -5.0590 -1.2372 14 7 1.5113 -4.9348 -0.0202 15 6 2.4284 -6.0739 0.1192 16 6 3.4589 -6.0403 -1.0112 17 6 4.4144 -7.2263 -0.8656 18 6 5.4446 -7.1931 -1.9964 19 1 4.9459 -7.1843 -2.9655 20 6 6.4060 -8.4017 -1.8892 21 6 7.7731 -7.7614 -2.2406 22 8 7.6984 -6.4536 -1.6334 23 6 6.3643 -5.9650 -1.8520 24 6 2.2449 -3.6629 0.0010 25 1 -0.4851 0.8400 -0.0004 26 1 0.9987 -2.4865 -2.1406 27 1 -0.3634 -1.7815 -1.2351 28 1 -0.9335 -4.0203 -2.1859 29 1 -0.9947 -4.0176 -0.4062 30 1 0.1924 -6.0241 -1.2387 31 1 1.3438 -4.9860 -2.1130 32 1 2.9403 -6.0127 1.0796 33 1 1.8627 -7.0041 0.0676 34 1 2.9470 -6.1014 -1.9715 35 1 4.0245 -5.1100 -0.9596 36 1 4.9263 -7.1648 0.0947 37 1 3.8490 -8.1568 -0.9170 38 1 6.4137 -8.8040 -0.8762 39 1 6.1413 -9.1744 -2.6111 40 1 7.8910 -7.6769 -3.3209 41 1 8.5900 -8.3392 -1.8082 42 1 6.3326 -5.3691 -2.7641 43 1 6.0465 -5.3619 -1.0015 44 1 2.8610 -3.6139 0.8989 45 1 2.8822 -3.5964 -0.8807 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400951764.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:54 Heat of formation + Delta-G solvation = -87.407809 kcal Electronic energy + Delta-G solvation = -21136.622749 eV Core-core repulsion = 18151.961877 eV Total energy + Delta-G solvation = -2984.660872 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.60143 -39.91544 -36.55709 -35.06848 -33.57336 -31.67762 -31.50097 -29.56195 -26.94001 -26.54003 -24.67883 -23.32318 -23.08305 -22.05053 -21.20547 -19.90747 -18.43915 -17.65410 -17.08083 -16.75730 -16.19243 -15.95932 -15.85486 -15.44657 -15.28708 -14.76588 -14.48799 -14.12857 -13.94523 -13.66923 -13.58458 -13.35443 -12.90906 -12.88487 -12.71967 -12.58054 -12.47470 -12.20165 -11.94918 -11.81467 -11.73457 -11.69857 -11.58393 -11.34372 -11.22157 -10.82730 -10.64701 -10.64187 -10.37839 -9.00008 -8.08358 -6.22363 1.39044 1.40883 1.52214 2.42371 3.02440 3.18525 3.21282 3.56924 3.69739 3.91838 4.08195 4.18829 4.25096 4.27190 4.32691 4.38054 4.40423 4.46424 4.61176 4.67877 4.73026 4.75973 4.80771 4.84314 4.87636 4.91373 4.95805 5.02854 5.04665 5.06867 5.14179 5.20380 5.21171 5.34753 5.42684 5.44464 5.54215 5.63833 5.93086 5.98240 6.14711 6.23162 6.44120 6.48204 6.90958 7.45598 8.96511 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.019847 B = 0.004373 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.420922 B = 6401.739051 C = 7489.245507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.014 3.986 3 Si 0.953 3.047 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.049 0.951 9 C 0.050 3.950 10 H -0.006 1.006 11 C -0.103 4.103 12 C -0.113 4.113 13 C 0.067 3.933 14 N -0.551 5.551 15 C 0.057 3.943 16 C -0.154 4.154 17 C -0.095 4.095 18 C -0.119 4.119 19 H 0.088 0.912 20 C -0.144 4.144 21 C 0.036 3.964 22 O -0.409 6.409 23 C 0.043 3.957 24 C 0.084 3.916 25 H 0.260 0.740 26 H 0.021 0.979 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.048 0.952 30 H 0.088 0.912 31 H 0.030 0.970 32 H 0.068 0.932 33 H 0.089 0.911 34 H 0.062 0.938 35 H 0.047 0.953 36 H 0.062 0.938 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.100 0.900 40 H 0.067 0.933 41 H 0.104 0.896 42 H 0.054 0.946 43 H 0.073 0.927 44 H 0.049 0.951 45 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.086 -18.543 -5.585 21.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.184 4.184 3 Si 0.778 3.222 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.574 4.574 8 H 0.068 0.932 9 C 0.031 3.969 10 H 0.012 0.988 11 C -0.141 4.141 12 C -0.151 4.151 13 C -0.061 4.061 14 N -0.275 5.275 15 C -0.071 4.071 16 C -0.193 4.193 17 C -0.133 4.133 18 C -0.138 4.138 19 H 0.106 0.894 20 C -0.181 4.181 21 C -0.040 4.040 22 O -0.329 6.329 23 C -0.033 4.033 24 C -0.044 4.044 25 H 0.069 0.931 26 H 0.040 0.960 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.106 0.894 31 H 0.048 0.952 32 H 0.087 0.913 33 H 0.107 0.893 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.118 0.882 40 H 0.085 0.915 41 H 0.122 0.878 42 H 0.072 0.928 43 H 0.092 0.908 44 H 0.067 0.933 45 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 8.775 -18.315 -5.062 20.929 hybrid contribution 0.611 1.464 -0.675 1.724 sum 9.385 -16.850 -5.737 20.123 Atomic orbital electron populations 1.70045 1.07146 1.26966 1.51337 1.25708 0.95649 1.02269 0.94807 0.85593 0.79045 0.79868 0.77667 1.19301 1.20503 1.20566 1.21554 0.92901 0.92290 1.50636 0.93249 1.18617 0.93094 0.91507 0.93670 0.98811 1.21444 0.99026 0.96354 0.97283 1.21611 0.97692 0.95003 1.00773 1.22015 0.94878 0.98842 0.90358 1.62131 1.24642 1.02397 1.38280 1.22272 0.92934 0.93736 0.98133 1.22241 0.98131 0.98943 0.99963 1.21479 0.95799 0.98352 0.97651 1.22574 0.96423 0.94261 1.00523 0.89353 1.23202 0.93623 0.97565 1.03723 1.23790 0.98989 0.82931 0.98266 1.88850 1.30957 1.34367 1.78677 1.23358 0.82021 0.96942 1.01017 1.21919 0.95216 0.88990 0.98246 0.93080 0.95976 0.92578 0.91286 0.93304 0.89370 0.95198 0.91348 0.89276 0.91953 0.93422 0.91935 0.89818 0.90032 0.88178 0.91494 0.87755 0.92820 0.90834 0.93261 0.96141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.11 11.36 21.45 0.24 -53.86 16 2 C 0.01 0.81 5.30 84.66 0.45 1.26 16 3 Si 0.95 44.59 29.54 68.60 2.03 46.61 16 4 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 7 C -0.54 -30.42 8.56 25.60 0.22 -30.20 16 8 H 0.05 2.77 7.74 -2.91 -0.02 2.75 16 9 C 0.05 2.61 2.26 -11.48 -0.03 2.58 16 10 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 11 C -0.10 -5.02 5.03 30.68 0.15 -4.86 16 12 C -0.11 -4.37 6.09 30.65 0.19 -4.18 16 13 C 0.07 2.19 5.05 86.33 0.44 2.62 16 14 N -0.55 -19.62 4.86 -896.38 -4.35 -23.98 16 15 C 0.06 1.52 5.36 86.30 0.46 1.99 16 16 C -0.15 -3.69 4.34 30.59 0.13 -3.55 16 17 C -0.09 -1.72 4.44 30.60 0.14 -1.59 16 18 C -0.12 -2.09 3.09 -9.80 -0.03 -2.12 16 19 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 20 C -0.14 -1.97 6.71 31.90 0.21 -1.76 16 21 C 0.04 0.59 7.72 72.67 0.56 1.15 16 22 O -0.41 -10.18 11.52 -148.98 -1.72 -11.90 16 23 C 0.04 1.00 6.93 72.36 0.50 1.50 16 24 C 0.08 3.61 4.06 86.33 0.35 3.96 16 25 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 26 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.06 3.10 6.17 -2.39 -0.01 3.09 16 28 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 30 H 0.09 2.37 8.06 -2.39 -0.02 2.35 16 31 H 0.03 0.96 6.75 -2.39 -0.02 0.95 16 32 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 33 H 0.09 1.99 8.06 -2.39 -0.02 1.97 16 34 H 0.06 1.50 6.68 -2.39 -0.02 1.48 16 35 H 0.05 1.36 5.23 -2.39 -0.01 1.35 16 36 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 38 H 0.08 1.09 7.87 -2.39 -0.02 1.07 16 39 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.10 1.35 8.14 -2.38 -0.02 1.33 16 42 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.07 1.89 6.70 -2.39 -0.02 1.87 16 44 H 0.05 2.15 8.12 -2.38 -0.02 2.13 16 45 H 0.02 0.88 6.61 -2.39 -0.02 0.86 16 Total: -1.00 -64.27 337.54 0.87 -63.40 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: 0.93 Total: 12.94 kcal Atomic # 6 Polarization: -36.96 SS G_CDS: 3.75 Total: -33.21 kcal Atomic # 7 Polarization: -73.73 SS G_CDS: -4.11 Total: -77.84 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: -1.72 Total: -11.90 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Total: -64.27 0.87 -63.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400951764.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.010 kcal (2) G-P(sol) polarization free energy of solvation -64.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds