Wall clock time and date at job start Mon Mar 30 2020 07:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46982 * 2 1 4 4 C 1.50690 * 109.47084 * 239.99835 * 2 1 3 5 5 H 1.08005 * 119.99710 * 239.99726 * 4 2 1 6 6 C 1.37876 * 120.00510 * 59.99933 * 4 2 1 7 7 N 1.31518 * 119.99589 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00335 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47227 * 59.99933 * 8 6 4 10 10 H 1.48506 * 109.46961 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46926 * 299.99724 * 8 6 4 12 12 C 1.53006 * 109.46974 * 119.99741 * 2 1 3 13 13 N 1.46504 * 109.46883 * 299.99861 * 12 2 1 14 14 C 1.34776 * 119.99735 * 179.97438 * 13 12 2 15 15 O 1.21282 * 119.99940 * 0.02562 * 14 13 12 16 16 C 1.50698 * 120.00035 * 179.97438 * 14 13 12 17 17 C 1.53006 * 109.47184 * 180.02562 * 16 14 13 18 18 C 1.53779 * 113.61588 * 274.13988 * 17 16 14 19 19 C 1.53951 * 87.01779 * 220.04774 * 18 17 16 20 20 C 1.53003 * 113.53561 * 270.81057 * 19 18 17 21 21 C 1.53001 * 113.74006 * 139.94772 * 19 18 17 22 22 C 1.53771 * 87.11252 * 25.36423 * 19 18 17 23 23 H 1.09004 * 109.47059 * 299.99867 * 1 2 3 24 24 H 1.08992 * 109.47060 * 60.00351 * 1 2 3 25 25 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.46716 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.46668 * 300.00213 * 3 2 1 28 28 H 1.09000 * 109.47360 * 59.99707 * 3 2 1 29 29 H 0.96997 * 119.99752 * 179.97438 * 7 6 4 30 30 H 1.08998 * 109.46509 * 180.02562 * 12 2 1 31 31 H 1.08993 * 109.46955 * 59.99927 * 12 2 1 32 32 H 0.96998 * 120.00303 * 0.02562 * 13 12 2 33 33 H 1.09001 * 109.46665 * 60.00498 * 16 14 13 34 34 H 1.08993 * 109.47304 * 300.00054 * 16 14 13 35 35 H 1.09006 * 112.84599 * 45.33780 * 17 16 14 36 36 H 1.08999 * 113.61559 * 334.56813 * 18 17 16 37 37 H 1.09002 * 113.60988 * 105.46679 * 18 17 16 38 38 H 1.09003 * 109.46962 * 157.49986 * 20 19 18 39 39 H 1.09004 * 109.47046 * 277.49440 * 20 19 18 40 40 H 1.08991 * 109.47184 * 37.49730 * 20 19 18 41 41 H 1.09000 * 109.46978 * 322.39458 * 21 19 18 42 42 H 1.09001 * 109.47256 * 82.40293 * 21 19 18 43 43 H 1.09007 * 109.46902 * 202.39981 * 21 19 18 44 44 H 1.09006 * 113.61359 * 220.08710 * 22 19 18 45 45 H 1.09000 * 113.61519 * 89.18865 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9427 0.8295 -2.6034 8 14 2.3214 -1.1206 -4.0078 9 1 1.8259 -2.5204 -4.0075 10 1 1.8269 -0.4201 -5.2204 11 1 3.8064 -1.1211 -4.0080 12 6 2.0400 -0.7212 1.2493 13 7 1.5516 -0.0305 2.4455 14 6 1.8768 -0.4912 3.6696 15 8 2.5740 -1.4773 3.7809 16 6 1.3749 0.2196 4.9000 17 6 1.8848 -0.5017 6.1493 18 6 0.9902 -1.6708 6.5939 19 6 1.2412 -1.2074 8.0404 20 6 2.4776 -1.8426 8.6797 21 6 0.0030 -1.2855 8.9358 22 6 1.4972 0.1951 7.4642 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 3.1299 1.4425 0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9564 0.8899 29 1 0.7087 1.1611 -3.4844 30 1 3.1300 -0.7208 1.2495 31 1 1.6767 -1.7488 1.2494 32 1 0.9937 0.7580 2.3564 33 1 0.2849 0.2204 4.8999 34 1 1.7391 1.2469 4.9000 35 1 2.9420 -0.7599 6.0871 36 1 -0.0480 -1.5711 6.2774 37 1 1.4099 -2.6515 6.3695 38 1 2.8271 -1.2135 9.4984 39 1 2.2213 -2.8299 9.0640 40 1 3.2652 -1.9369 7.9322 41 1 -0.8793 -1.0038 8.3611 42 1 -0.1142 -2.3041 9.3058 43 1 0.1204 -0.6041 9.7785 44 1 2.3256 0.7187 7.9416 45 1 0.5979 0.8060 7.3861 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458039810.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:52 Heat of formation + Delta-G solvation = -48.596887 kcal Electronic energy + Delta-G solvation = -20819.039421 eV Core-core repulsion = 17836.061517 eV Total energy + Delta-G solvation = -2982.977904 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.14427 -38.73257 -36.29910 -33.21625 -32.26997 -30.81795 -28.15612 -27.55641 -25.74577 -25.71955 -25.50483 -24.63858 -21.24892 -19.70276 -18.73944 -18.36420 -16.82239 -15.79778 -15.51008 -15.16918 -14.84121 -14.56382 -14.24894 -14.15710 -13.53950 -13.18945 -12.87458 -12.84285 -12.74155 -12.20815 -12.14240 -11.92782 -11.90276 -11.47196 -11.34115 -11.17684 -10.84670 -10.79861 -10.72255 -10.59426 -10.37268 -10.19926 -10.09209 -10.02123 -9.62247 -9.48359 -9.14636 -8.78105 -8.42577 -8.26499 -6.01550 -4.11664 3.15752 3.30392 3.34545 3.38125 3.82461 4.37968 4.40961 4.54530 4.60511 4.77819 5.05740 5.25040 5.28566 5.29336 5.45719 5.46129 5.58155 5.64465 5.68726 5.74888 5.77692 5.84253 5.85930 5.90186 6.11723 6.14832 6.27003 6.35496 6.40429 6.52460 6.55299 6.80997 6.83268 6.95482 7.02991 7.08994 7.36906 7.56469 7.69877 8.01741 8.10324 8.19659 8.39790 8.79264 8.89551 9.54090 10.99838 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.046574 B = 0.003297 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.054624 B = 8490.351208 C = 8671.363624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.056 3.944 3 C -0.130 4.130 4 C -0.507 4.507 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.893 3.107 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.132 3.868 13 N -0.720 5.720 14 C 0.503 3.497 15 O -0.553 6.553 16 C -0.133 4.133 17 C -0.090 4.090 18 C -0.123 4.123 19 C -0.092 4.092 20 C -0.128 4.128 21 C -0.134 4.134 22 C -0.129 4.129 23 H 0.006 0.994 24 H 0.085 0.915 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.085 0.915 28 H 0.006 0.994 29 H 0.260 0.740 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.397 0.603 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.054 0.946 39 H 0.055 0.945 40 H 0.060 0.940 41 H 0.055 0.945 42 H 0.053 0.947 43 H 0.053 0.947 44 H 0.065 0.935 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.991 0.879 18.690 18.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.055 3.945 3 C -0.188 4.188 4 C -0.546 4.546 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.009 3.991 13 N -0.371 5.371 14 C 0.289 3.711 15 O -0.432 6.432 16 C -0.173 4.173 17 C -0.108 4.108 18 C -0.161 4.161 19 C -0.092 4.092 20 C -0.185 4.185 21 C -0.191 4.191 22 C -0.167 4.167 23 H 0.025 0.975 24 H 0.104 0.896 25 H 0.045 0.955 26 H 0.045 0.955 27 H 0.104 0.896 28 H 0.025 0.975 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.232 0.768 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.116 0.884 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.084 0.916 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.572 0.284 18.592 18.660 hybrid contribution 0.014 -0.036 -1.012 1.013 sum -1.558 0.248 17.580 17.650 Atomic orbital electron populations 1.21826 0.97802 0.99126 1.00047 1.18344 0.92761 0.92734 0.90618 1.21827 0.98552 0.98385 1.00056 1.20967 1.31502 1.12111 0.89972 0.92523 1.24880 0.94856 0.94928 0.98835 1.69796 1.36647 1.22774 1.23309 0.86632 0.79241 0.79806 0.82177 1.20273 1.21319 1.20284 1.21677 0.98016 0.95737 0.83642 1.46358 1.52748 1.31792 1.06186 1.20616 0.80716 0.84904 0.84910 1.90647 1.38688 1.26790 1.87044 1.21694 1.02068 1.00470 0.93104 1.22234 1.00791 0.96104 0.91703 1.23127 0.99610 0.98991 0.94324 1.21803 0.95824 0.96736 0.94845 1.21593 0.96539 1.00074 1.00342 1.21723 0.96779 1.01432 0.99211 1.23135 1.01356 0.95802 0.96368 0.97505 0.89620 0.95503 0.95489 0.89623 0.97493 0.92962 0.92908 0.92906 0.76834 0.89321 0.89234 0.88394 0.90424 0.91260 0.92664 0.92583 0.92121 0.92620 0.92818 0.92828 0.91609 0.90127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 2 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 3 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 4 C -0.51 -13.41 8.01 -34.45 -0.28 -13.69 16 5 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 6 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 7 N -0.89 -23.73 9.35 55.43 0.52 -23.21 16 8 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 9 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 C 0.13 2.85 4.50 -4.04 -0.02 2.83 16 13 N -0.72 -12.85 4.96 -60.29 -0.30 -13.15 16 14 C 0.50 8.60 7.83 -10.99 -0.09 8.52 16 15 O -0.55 -11.48 15.79 5.56 0.09 -11.39 16 16 C -0.13 -1.63 5.52 -27.88 -0.15 -1.78 16 17 C -0.09 -1.06 2.76 -89.81 -0.25 -1.30 16 18 C -0.12 -1.41 6.76 -25.83 -0.17 -1.59 16 19 C -0.09 -0.87 1.39 -153.61 -0.21 -1.09 16 20 C -0.13 -1.16 9.07 37.16 0.34 -0.82 16 21 C -0.13 -1.10 9.20 37.16 0.34 -0.76 16 22 C -0.13 -1.21 6.79 -25.93 -0.18 -1.39 16 23 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 24 H 0.09 2.14 6.07 -51.93 -0.32 1.83 16 25 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.09 2.14 6.07 -51.93 -0.32 1.83 16 28 H 0.01 0.12 6.86 -51.93 -0.36 -0.23 16 29 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 30 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.40 6.36 6.16 -40.82 -0.25 6.11 16 33 H 0.09 0.95 7.88 -51.93 -0.41 0.54 16 34 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.10 1.33 7.25 -51.93 -0.38 0.95 16 36 H 0.08 0.86 7.75 -51.93 -0.40 0.45 16 37 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 38 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.60 7.34 -51.93 -0.38 0.22 16 41 H 0.05 0.45 7.96 -51.93 -0.41 0.03 16 42 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.05 0.40 8.14 -51.92 -0.42 -0.03 16 44 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 45 H 0.08 0.69 8.06 -51.93 -0.42 0.27 16 LS Contribution 348.39 15.07 5.25 5.25 Total: -1.00 -28.28 348.39 -7.88 -36.16 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -8.18 Total: 4.01 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: -0.24 Total: -13.49 kcal Atomic # 7 Polarization: -36.58 SS G_CDS: 0.22 Total: -36.37 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.09 Total: -11.39 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -28.28 -7.88 -36.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458039810.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.432 kcal (2) G-P(sol) polarization free energy of solvation -28.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds