Wall clock time and date at job start Mon Mar 30 2020 07:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46982 * 2 1 4 4 C 1.50690 * 109.47084 * 239.99835 * 2 1 3 5 5 H 1.08005 * 119.99710 * 239.99726 * 4 2 1 6 6 C 1.37876 * 120.00510 * 59.99933 * 4 2 1 7 7 N 1.31518 * 119.99589 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00335 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47227 * 59.99933 * 8 6 4 10 10 H 1.48506 * 109.46961 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46926 * 299.99724 * 8 6 4 12 12 C 1.53006 * 109.46974 * 119.99741 * 2 1 3 13 13 N 1.46504 * 109.46883 * 299.99861 * 12 2 1 14 14 C 1.34776 * 119.99735 * 179.97438 * 13 12 2 15 15 O 1.21282 * 119.99940 * 0.02562 * 14 13 12 16 16 C 1.50698 * 120.00035 * 179.97438 * 14 13 12 17 17 C 1.53006 * 109.47184 * 180.02562 * 16 14 13 18 18 C 1.53779 * 113.61588 * 274.13988 * 17 16 14 19 19 C 1.53951 * 87.01779 * 220.04774 * 18 17 16 20 20 C 1.53003 * 113.53561 * 270.81057 * 19 18 17 21 21 C 1.53001 * 113.74006 * 139.94772 * 19 18 17 22 22 C 1.53771 * 87.11252 * 25.36423 * 19 18 17 23 23 H 1.09004 * 109.47059 * 299.99867 * 1 2 3 24 24 H 1.08992 * 109.47060 * 60.00351 * 1 2 3 25 25 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.46716 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.46668 * 300.00213 * 3 2 1 28 28 H 1.09000 * 109.47360 * 59.99707 * 3 2 1 29 29 H 0.96997 * 119.99752 * 179.97438 * 7 6 4 30 30 H 1.08998 * 109.46509 * 180.02562 * 12 2 1 31 31 H 1.08993 * 109.46955 * 59.99927 * 12 2 1 32 32 H 0.96998 * 120.00303 * 0.02562 * 13 12 2 33 33 H 1.09001 * 109.46665 * 60.00498 * 16 14 13 34 34 H 1.08993 * 109.47304 * 300.00054 * 16 14 13 35 35 H 1.09006 * 112.84599 * 45.33780 * 17 16 14 36 36 H 1.08999 * 113.61559 * 334.56813 * 18 17 16 37 37 H 1.09002 * 113.60988 * 105.46679 * 18 17 16 38 38 H 1.09003 * 109.46962 * 157.49986 * 20 19 18 39 39 H 1.09004 * 109.47046 * 277.49440 * 20 19 18 40 40 H 1.08991 * 109.47184 * 37.49730 * 20 19 18 41 41 H 1.09000 * 109.46978 * 322.39458 * 21 19 18 42 42 H 1.09001 * 109.47256 * 82.40293 * 21 19 18 43 43 H 1.09007 * 109.46902 * 202.39981 * 21 19 18 44 44 H 1.09006 * 113.61359 * 220.08710 * 22 19 18 45 45 H 1.09000 * 113.61519 * 89.18865 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9427 0.8295 -2.6034 8 14 2.3214 -1.1206 -4.0078 9 1 1.8259 -2.5204 -4.0075 10 1 1.8269 -0.4201 -5.2204 11 1 3.8064 -1.1211 -4.0080 12 6 2.0400 -0.7212 1.2493 13 7 1.5516 -0.0305 2.4455 14 6 1.8768 -0.4912 3.6696 15 8 2.5740 -1.4773 3.7809 16 6 1.3749 0.2196 4.9000 17 6 1.8848 -0.5017 6.1493 18 6 0.9902 -1.6708 6.5939 19 6 1.2412 -1.2074 8.0404 20 6 2.4776 -1.8426 8.6797 21 6 0.0030 -1.2855 8.9358 22 6 1.4972 0.1951 7.4642 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 3.1299 1.4425 0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9564 0.8899 29 1 0.7087 1.1611 -3.4844 30 1 3.1300 -0.7208 1.2495 31 1 1.6767 -1.7488 1.2494 32 1 0.9937 0.7580 2.3564 33 1 0.2849 0.2204 4.8999 34 1 1.7391 1.2469 4.9000 35 1 2.9420 -0.7599 6.0871 36 1 -0.0480 -1.5711 6.2774 37 1 1.4099 -2.6515 6.3695 38 1 2.8271 -1.2135 9.4984 39 1 2.2213 -2.8299 9.0640 40 1 3.2652 -1.9369 7.9322 41 1 -0.8793 -1.0038 8.3611 42 1 -0.1142 -2.3041 9.3058 43 1 0.1204 -0.6041 9.7785 44 1 2.3256 0.7187 7.9416 45 1 0.5979 0.8060 7.3861 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458039810.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:52 Heat of formation + Delta-G solvation = -63.374026 kcal Electronic energy + Delta-G solvation = -20819.680206 eV Core-core repulsion = 17836.061517 eV Total energy + Delta-G solvation = -2983.618689 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.19200 -39.99734 -38.05462 -34.95081 -33.30569 -32.54330 -29.19248 -28.24418 -27.56567 -27.39745 -26.55984 -26.34383 -22.40560 -20.94627 -20.55523 -19.17360 -18.28401 -17.61431 -16.78065 -16.62160 -16.41726 -15.83310 -15.19524 -15.15265 -14.85139 -14.68432 -14.48335 -14.04912 -13.89531 -13.54653 -13.25831 -13.09660 -13.05603 -12.78925 -12.64928 -12.64078 -12.62927 -12.24841 -12.23592 -12.13994 -11.65271 -11.48704 -11.40979 -11.26783 -10.94527 -10.84312 -10.74659 -10.56763 -10.40279 -9.88796 -8.03234 -6.19218 1.43048 1.44054 1.50855 1.79550 2.37447 2.53511 3.20072 3.60734 3.70440 3.79067 3.87343 4.11807 4.33104 4.45612 4.46799 4.51110 4.63741 4.71010 4.74642 4.81706 4.83470 4.92319 4.95551 5.01029 5.04247 5.05760 5.07169 5.08216 5.12827 5.19256 5.22406 5.33053 5.36654 5.39589 5.62904 5.63674 5.66022 5.67013 5.72487 6.15130 6.21574 6.43140 6.75725 6.84991 7.42167 7.48525 8.95438 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.046574 B = 0.003297 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.054624 B = 8490.351208 C = 8671.363624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.052 3.948 3 C -0.120 4.120 4 C -0.533 4.533 5 H 0.042 0.958 6 C 0.029 3.971 7 N -0.899 5.899 8 Si 0.944 3.056 9 H -0.277 1.277 10 H -0.281 1.281 11 H -0.277 1.277 12 C 0.148 3.852 13 N -0.715 5.715 14 C 0.499 3.501 15 O -0.594 6.594 16 C -0.122 4.122 17 C -0.097 4.097 18 C -0.131 4.131 19 C -0.089 4.089 20 C -0.129 4.129 21 C -0.132 4.132 22 C -0.115 4.115 23 H 0.039 0.961 24 H 0.062 0.938 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.062 0.938 28 H 0.039 0.961 29 H 0.261 0.739 30 H 0.033 0.967 31 H 0.033 0.967 32 H 0.409 0.591 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.042 0.958 38 H 0.068 0.932 39 H 0.057 0.943 40 H 0.043 0.957 41 H 0.059 0.941 42 H 0.053 0.947 43 H 0.065 0.935 44 H 0.073 0.927 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.010 2.208 20.326 20.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.051 3.949 3 C -0.178 4.178 4 C -0.572 4.572 5 H 0.060 0.940 6 C -0.171 4.171 7 N -0.537 5.537 8 Si 0.771 3.229 9 H -0.203 1.203 10 H -0.206 1.206 11 H -0.203 1.203 12 C 0.024 3.976 13 N -0.366 5.366 14 C 0.288 3.712 15 O -0.476 6.476 16 C -0.162 4.162 17 C -0.116 4.116 18 C -0.168 4.168 19 C -0.089 4.089 20 C -0.187 4.187 21 C -0.189 4.189 22 C -0.152 4.152 23 H 0.058 0.942 24 H 0.081 0.919 25 H 0.035 0.965 26 H 0.035 0.965 27 H 0.081 0.919 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.246 0.754 33 H 0.132 0.868 34 H 0.134 0.866 35 H 0.091 0.909 36 H 0.103 0.897 37 H 0.061 0.939 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.062 0.938 41 H 0.078 0.922 42 H 0.072 0.928 43 H 0.084 0.916 44 H 0.092 0.908 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.607 1.637 20.241 20.474 hybrid contribution 0.356 -0.492 -1.508 1.626 sum -2.250 1.145 18.733 18.902 Atomic orbital electron populations 1.21666 0.97060 0.98568 1.00492 1.18342 0.93280 0.93032 0.90230 1.21669 0.97826 0.97824 1.00504 1.21276 1.31857 1.12231 0.91790 0.93959 1.25446 0.95109 0.95599 1.00926 1.69896 1.36872 1.23249 1.23701 0.85831 0.78621 0.78836 0.79611 1.20289 1.20639 1.20304 1.21203 0.96710 0.94948 0.84745 1.46210 1.52985 1.31999 1.05446 1.21554 0.79582 0.84357 0.85753 1.90637 1.40505 1.28836 1.87598 1.21752 1.03437 1.00935 0.90055 1.22217 0.99440 0.96969 0.92958 1.23189 0.99675 0.97653 0.96303 1.21801 0.96503 0.96664 0.93904 1.21605 0.96115 1.00644 1.00304 1.21706 0.96025 1.01858 0.99308 1.23092 1.02286 0.95703 0.94092 0.94226 0.91869 0.96512 0.96476 0.91869 0.94211 0.92966 0.94832 0.94859 0.75399 0.86765 0.86623 0.90899 0.89730 0.93880 0.91256 0.92347 0.93753 0.92188 0.92824 0.91612 0.90806 0.88304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.34 8.08 71.98 0.58 -4.76 16 2 C 0.05 2.42 0.50 -52.93 -0.03 2.39 16 3 C -0.12 -5.36 8.08 71.98 0.58 -4.78 16 4 C -0.53 -28.64 8.01 25.60 0.21 -28.43 16 5 H 0.04 2.33 7.74 -2.91 -0.02 2.30 16 6 C 0.03 1.55 5.15 84.65 0.44 1.98 16 7 N -0.90 -48.10 9.35 21.45 0.20 -47.90 16 8 Si 0.94 42.92 29.54 68.60 2.03 44.95 16 9 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 10 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 12 C 0.15 6.44 4.50 86.38 0.39 6.83 16 13 N -0.71 -24.52 4.96 -463.05 -2.30 -26.82 16 14 C 0.50 16.55 7.83 87.66 0.69 17.23 16 15 O -0.59 -25.05 15.79 -3.04 -0.05 -25.10 16 16 C -0.12 -2.65 5.52 29.85 0.16 -2.48 16 17 C -0.10 -2.14 2.76 -10.27 -0.03 -2.17 16 18 C -0.13 -2.87 6.76 31.18 0.21 -2.66 16 19 C -0.09 -1.51 1.39 -51.60 -0.07 -1.58 16 20 C -0.13 -2.20 9.07 71.98 0.65 -1.55 16 21 C -0.13 -1.80 9.20 71.98 0.66 -1.14 16 22 C -0.11 -1.79 6.79 31.12 0.21 -1.58 16 23 H 0.04 1.45 6.86 -2.39 -0.02 1.44 16 24 H 0.06 3.12 6.07 -2.39 -0.01 3.11 16 25 H 0.02 0.73 8.14 -2.38 -0.02 0.71 16 26 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.06 3.12 6.07 -2.39 -0.01 3.11 16 28 H 0.04 1.46 6.86 -2.39 -0.02 1.44 16 29 H 0.26 13.45 8.31 -92.71 -0.77 12.68 16 30 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.41 11.94 6.16 -92.71 -0.57 11.37 16 33 H 0.11 1.96 7.88 -2.39 -0.02 1.95 16 34 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.07 1.99 7.25 -2.38 -0.02 1.97 16 36 H 0.08 1.71 7.75 -2.39 -0.02 1.69 16 37 H 0.04 1.15 8.10 -2.39 -0.02 1.13 16 38 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.04 0.89 7.34 -2.39 -0.02 0.87 16 41 H 0.06 0.77 7.96 -2.39 -0.02 0.76 16 42 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 44 H 0.07 1.07 8.10 -2.38 -0.02 1.05 16 45 H 0.10 1.23 8.06 -2.39 -0.02 1.21 16 Total: -1.00 -61.98 348.39 4.91 -57.07 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: 0.37 Total: 20.50 kcal Atomic # 6 Polarization: -27.36 SS G_CDS: 4.65 Total: -22.70 kcal Atomic # 7 Polarization: -72.62 SS G_CDS: -2.10 Total: -74.72 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: -0.05 Total: -25.10 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -61.98 4.91 -57.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458039810.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.301 kcal (2) G-P(sol) polarization free energy of solvation -61.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds