Wall clock time and date at job start Mon Mar 30 2020 07:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.34783 * 119.99714 * 2 1 4 4 O 1.21273 * 119.99794 * 180.02562 * 3 2 1 5 5 C 1.50695 * 120.00017 * 359.97438 * 3 2 1 6 6 C 1.53002 * 109.47143 * 180.02562 * 5 3 2 7 7 C 1.52999 * 109.47316 * 180.02562 * 6 5 3 8 8 C 1.52995 * 109.47086 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.47113 * 179.97438 * 8 7 6 10 10 H 1.08002 * 119.99952 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00040 * 179.97438 * 9 8 7 12 12 N 1.31519 * 120.00064 * 179.97438 * 11 9 8 13 13 Si 1.86794 * 119.99943 * 0.02562 * 11 9 8 14 14 H 1.48495 * 109.47445 * 89.99725 * 13 11 9 15 15 H 1.48508 * 109.46928 * 209.99415 * 13 11 9 16 16 H 1.48499 * 109.47133 * 329.99417 * 13 11 9 17 17 C 1.46496 * 120.00086 * 179.97438 * 2 1 3 18 18 C 1.53006 * 110.01614 * 248.53836 * 17 2 1 19 19 C 1.53874 * 110.02992 * 127.14627 * 17 2 1 20 20 C 1.54377 * 106.54461 * 240.72713 * 19 17 2 21 21 C 1.54889 * 104.21300 * 23.57626 * 20 19 17 22 22 C 1.54270 * 110.03238 * 9.92660 * 17 2 1 23 23 H 1.08999 * 109.47220 * 95.71796 * 1 2 3 24 24 H 1.09000 * 109.46913 * 215.71614 * 1 2 3 25 25 H 1.08999 * 109.46964 * 335.71530 * 1 2 3 26 26 H 1.09004 * 109.47565 * 60.00288 * 5 3 2 27 27 H 1.09007 * 109.47160 * 300.00052 * 5 3 2 28 28 H 1.08997 * 109.46763 * 299.99820 * 6 5 3 29 29 H 1.08994 * 109.46915 * 59.99636 * 6 5 3 30 30 H 1.09007 * 109.47019 * 299.99788 * 7 6 5 31 31 H 1.09004 * 109.47049 * 59.99707 * 7 6 5 32 32 H 1.08997 * 109.46928 * 299.99713 * 8 7 6 33 33 H 1.08995 * 109.47394 * 60.00009 * 8 7 6 34 34 H 0.96998 * 120.00187 * 180.02562 * 12 11 9 35 35 H 1.08997 * 109.46868 * 60.70211 * 18 17 2 36 36 H 1.08997 * 109.47009 * 180.70168 * 18 17 2 37 37 H 1.09000 * 109.46599 * 300.70293 * 18 17 2 38 38 H 1.08993 * 110.03641 * 359.97438 * 19 17 2 39 39 H 1.09000 * 110.03174 * 121.43559 * 19 17 2 40 40 H 1.09004 * 110.46036 * 264.90173 * 20 19 17 41 41 H 1.08997 * 110.60376 * 142.32349 * 20 19 17 42 42 H 1.09002 * 110.75552 * 203.76187 * 21 20 19 43 43 H 1.08997 * 110.75885 * 80.38941 * 21 20 19 44 44 H 1.08994 * 110.48377 * 214.35364 * 22 17 2 45 45 H 1.08994 * 110.48770 * 336.86585 * 22 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3517 1.1673 -0.0005 5 6 1.3854 2.4723 -0.0006 6 6 2.3796 3.6353 -0.0011 7 6 1.6146 4.9603 -0.0011 8 6 2.6088 6.1232 -0.0009 9 6 1.8552 7.4283 -0.0015 10 1 0.7752 7.4283 -0.0023 11 6 2.5446 8.6224 -0.0010 12 7 1.8870 9.7613 -0.0020 13 14 4.4125 8.6224 -0.0003 14 1 4.9081 8.6226 -1.4001 15 1 4.9072 9.8349 0.7002 16 1 4.9073 7.4098 0.6998 17 6 2.1976 -1.2687 0.0006 18 6 2.9150 -1.4586 1.3386 19 6 3.2171 -1.2891 -1.1518 20 6 2.8276 -2.4733 -2.0624 21 6 1.3224 -2.6963 -1.7733 22 6 1.2254 -2.4403 -0.2488 23 1 -0.3633 -0.1024 -1.0225 24 1 -0.3633 -0.8344 0.5999 25 1 -0.3633 0.9367 0.4226 26 1 0.7584 2.5303 0.8892 27 1 0.7590 2.5298 -0.8909 28 1 3.0062 3.5779 0.8889 29 1 3.0062 3.5771 -0.8910 30 1 0.9876 5.0179 -0.8909 31 1 0.9882 5.0181 0.8891 32 1 3.2353 6.0654 0.8891 33 1 3.2355 6.0656 -0.8908 34 1 2.3720 10.6014 -0.0020 35 1 2.1813 -1.4799 2.1444 36 1 3.4668 -2.3985 1.3248 37 1 3.6079 -0.6328 1.4997 38 1 3.1666 -0.3554 -1.7117 39 1 4.2229 -1.4353 -0.7579 40 1 3.4023 -3.3614 -1.7993 41 1 2.9809 -2.2175 -3.1108 42 1 1.0304 -3.7189 -2.0125 43 1 0.7129 -1.9804 -2.3247 44 1 1.5414 -3.3230 0.3072 45 1 0.2097 -2.1589 0.0290 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588979282.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:05 Heat of formation + Delta-G solvation = -60.042894 kcal Electronic energy + Delta-G solvation = -20872.463202 eV Core-core repulsion = 17888.988962 eV Total energy + Delta-G solvation = -2983.474240 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.71327 -38.04832 -34.99543 -34.71160 -32.56930 -31.24643 -29.86177 -29.28780 -26.55927 -26.01673 -25.03371 -22.37204 -20.96010 -20.34004 -19.97435 -18.27207 -16.95648 -16.63455 -16.43234 -15.96141 -15.31717 -14.68642 -14.31577 -14.15939 -13.84448 -13.62056 -13.25252 -13.02653 -12.73211 -12.63174 -12.48521 -12.14531 -12.04103 -11.73045 -11.70124 -11.35460 -11.28642 -11.07737 -10.99359 -10.92750 -10.77066 -10.67931 -10.50188 -9.85314 -9.69261 -9.61444 -9.31326 -9.09521 -8.71580 -8.47646 -5.98965 -3.96285 2.72832 2.88853 3.36770 3.43632 3.50032 4.13304 4.34344 4.51769 4.55308 4.74324 4.85292 5.00434 5.06919 5.15168 5.17624 5.24582 5.27573 5.34159 5.36477 5.38599 5.41303 5.51831 5.57093 5.58790 5.65670 5.79583 5.82906 5.85832 6.01283 6.06734 6.12698 6.15703 6.19431 6.43754 6.60708 6.71759 6.85378 7.01936 7.35499 7.40855 7.53546 7.86730 8.26741 8.60212 9.06111 9.64569 11.14608 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.037236 B = 0.003279 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.780016 B = 8537.066912 C = 8811.191247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.614 5.614 3 C 0.513 3.487 4 O -0.531 6.531 5 C -0.138 4.138 6 C -0.105 4.105 7 C -0.102 4.102 8 C -0.015 4.015 9 C -0.519 4.519 10 H 0.071 0.929 11 C 0.064 3.936 12 N -0.907 5.907 13 Si 0.880 3.120 14 H -0.277 1.277 15 H -0.289 1.289 16 H -0.264 1.264 17 C 0.171 3.829 18 C -0.156 4.156 19 C -0.119 4.119 20 C -0.127 4.127 21 C -0.123 4.123 22 C -0.136 4.136 23 H 0.056 0.944 24 H 0.072 0.928 25 H 0.078 0.922 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.015 0.985 33 H 0.011 0.989 34 H 0.262 0.738 35 H 0.053 0.947 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.077 0.923 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.229 -28.436 -0.899 28.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.350 5.350 3 C 0.303 3.697 4 O -0.407 6.407 5 C -0.178 4.178 6 C -0.143 4.143 7 C -0.140 4.140 8 C -0.053 4.053 9 C -0.557 4.557 10 H 0.089 0.911 11 C -0.136 4.136 12 N -0.546 5.546 13 Si 0.707 3.293 14 H -0.203 1.203 15 H -0.215 1.215 16 H -0.189 1.189 17 C 0.087 3.913 18 C -0.214 4.214 19 C -0.157 4.157 20 C -0.164 4.164 21 C -0.160 4.160 22 C -0.174 4.174 23 H 0.074 0.926 24 H 0.091 0.909 25 H 0.096 0.904 26 H 0.108 0.892 27 H 0.108 0.892 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.034 0.966 33 H 0.029 0.971 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.096 0.904 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.549 -28.236 -0.892 28.365 hybrid contribution 0.803 0.167 -0.002 0.820 sum -1.746 -28.070 -0.894 28.138 Atomic orbital electron populations 1.21881 0.80114 1.03277 1.01859 1.48142 1.06603 1.05502 1.74724 1.20986 0.88283 0.85249 0.75220 1.90673 1.14050 1.87366 1.48636 1.21818 1.00016 0.92148 1.03822 1.21477 0.97148 0.92913 1.02802 1.21473 0.98633 0.93023 1.00850 1.19572 0.95319 0.94083 0.96288 1.21193 0.95029 0.89038 1.50422 0.91120 1.25042 0.98408 0.95549 0.94627 1.69923 1.35724 0.97395 1.51566 0.86771 0.86343 0.77639 0.78540 1.20316 1.21465 1.18895 1.20990 0.91721 0.82961 0.95627 1.22196 1.00756 1.02552 0.95912 1.22487 0.98635 0.98909 0.95713 1.22426 0.95929 0.98374 0.99712 1.22477 0.96779 1.01257 0.95494 1.22923 0.99954 0.97382 0.97104 0.92585 0.90917 0.90375 0.89177 0.89219 0.91873 0.91875 0.92928 0.92908 0.96638 0.97083 0.92831 0.92812 0.91896 0.91042 0.90781 0.91036 0.91720 0.91692 0.91505 0.91472 0.90431 0.89977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.52 9.22 59.85 0.55 1.08 16 2 N -0.61 -6.55 2.82 -165.36 -0.47 -7.01 16 3 C 0.51 7.12 6.78 -10.99 -0.07 7.05 16 4 O -0.53 -9.18 13.10 5.56 0.07 -9.11 16 5 C -0.14 -1.83 4.17 -27.88 -0.12 -1.94 16 6 C -0.11 -1.82 4.50 -26.73 -0.12 -1.94 16 7 C -0.10 -2.05 5.15 -26.73 -0.14 -2.18 16 8 C -0.02 -0.38 4.04 -27.88 -0.11 -0.49 16 9 C -0.52 -15.24 9.66 -34.44 -0.33 -15.57 16 10 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 11 C 0.06 1.93 5.47 -17.82 -0.10 1.84 16 12 N -0.91 -28.62 13.96 55.43 0.77 -27.85 16 13 Si 0.88 22.57 27.47 -169.99 -4.67 17.90 16 14 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 15 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 16 H -0.26 -6.60 6.54 56.52 0.37 -6.23 16 17 C 0.17 1.69 0.89 -130.70 -0.12 1.58 16 18 C -0.16 -1.58 8.20 37.16 0.30 -1.28 16 19 C -0.12 -1.30 5.10 -25.55 -0.13 -1.43 16 20 C -0.13 -1.05 6.83 -25.01 -0.17 -1.22 16 21 C -0.12 -0.86 6.91 -24.74 -0.17 -1.03 16 22 C -0.14 -0.97 5.62 -25.07 -0.14 -1.11 16 23 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.07 0.41 6.04 -51.93 -0.31 0.10 16 25 H 0.08 0.53 6.24 -51.93 -0.32 0.21 16 26 H 0.09 1.04 7.42 -51.93 -0.39 0.66 16 27 H 0.09 1.05 8.11 -51.93 -0.42 0.63 16 28 H 0.06 1.15 8.10 -51.93 -0.42 0.73 16 29 H 0.06 1.15 8.10 -51.93 -0.42 0.73 16 30 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 33 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 34 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.92 6.85 -51.93 -0.36 0.57 16 38 H 0.07 0.99 6.62 -51.93 -0.34 0.65 16 39 H 0.07 0.82 7.67 -51.93 -0.40 0.42 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.08 0.49 7.85 -51.93 -0.41 0.08 16 45 H 0.08 0.50 4.95 -51.93 -0.26 0.24 16 LS Contribution 342.95 15.07 5.17 5.17 Total: -1.00 -33.44 342.95 -8.19 -41.63 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -8.21 Total: -4.07 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: -0.86 Total: -16.66 kcal Atomic # 7 Polarization: -35.17 SS G_CDS: 0.31 Total: -34.87 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.07 Total: -9.11 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -4.67 Total: 17.90 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.44 -8.19 -41.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588979282.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.414 kcal (2) G-P(sol) polarization free energy of solvation -33.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds