Wall clock time and date at job start Mon Mar 30 2020 07:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.34783 * 119.99714 * 2 1 4 4 O 1.21273 * 119.99794 * 180.02562 * 3 2 1 5 5 C 1.50695 * 120.00017 * 359.97438 * 3 2 1 6 6 C 1.53002 * 109.47143 * 180.02562 * 5 3 2 7 7 C 1.52999 * 109.47316 * 180.02562 * 6 5 3 8 8 C 1.52995 * 109.47086 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.47113 * 179.97438 * 8 7 6 10 10 H 1.08002 * 119.99952 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00040 * 179.97438 * 9 8 7 12 12 N 1.31519 * 120.00064 * 179.97438 * 11 9 8 13 13 Si 1.86794 * 119.99943 * 0.02562 * 11 9 8 14 14 H 1.48495 * 109.47445 * 89.99725 * 13 11 9 15 15 H 1.48508 * 109.46928 * 209.99415 * 13 11 9 16 16 H 1.48499 * 109.47133 * 329.99417 * 13 11 9 17 17 C 1.46496 * 120.00086 * 179.97438 * 2 1 3 18 18 C 1.53006 * 110.01614 * 248.53836 * 17 2 1 19 19 C 1.53874 * 110.02992 * 127.14627 * 17 2 1 20 20 C 1.54377 * 106.54461 * 240.72713 * 19 17 2 21 21 C 1.54889 * 104.21300 * 23.57626 * 20 19 17 22 22 C 1.54270 * 110.03238 * 9.92660 * 17 2 1 23 23 H 1.08999 * 109.47220 * 95.71796 * 1 2 3 24 24 H 1.09000 * 109.46913 * 215.71614 * 1 2 3 25 25 H 1.08999 * 109.46964 * 335.71530 * 1 2 3 26 26 H 1.09004 * 109.47565 * 60.00288 * 5 3 2 27 27 H 1.09007 * 109.47160 * 300.00052 * 5 3 2 28 28 H 1.08997 * 109.46763 * 299.99820 * 6 5 3 29 29 H 1.08994 * 109.46915 * 59.99636 * 6 5 3 30 30 H 1.09007 * 109.47019 * 299.99788 * 7 6 5 31 31 H 1.09004 * 109.47049 * 59.99707 * 7 6 5 32 32 H 1.08997 * 109.46928 * 299.99713 * 8 7 6 33 33 H 1.08995 * 109.47394 * 60.00009 * 8 7 6 34 34 H 0.96998 * 120.00187 * 180.02562 * 12 11 9 35 35 H 1.08997 * 109.46868 * 60.70211 * 18 17 2 36 36 H 1.08997 * 109.47009 * 180.70168 * 18 17 2 37 37 H 1.09000 * 109.46599 * 300.70293 * 18 17 2 38 38 H 1.08993 * 110.03641 * 359.97438 * 19 17 2 39 39 H 1.09000 * 110.03174 * 121.43559 * 19 17 2 40 40 H 1.09004 * 110.46036 * 264.90173 * 20 19 17 41 41 H 1.08997 * 110.60376 * 142.32349 * 20 19 17 42 42 H 1.09002 * 110.75552 * 203.76187 * 21 20 19 43 43 H 1.08997 * 110.75885 * 80.38941 * 21 20 19 44 44 H 1.08994 * 110.48377 * 214.35364 * 22 17 2 45 45 H 1.08994 * 110.48770 * 336.86585 * 22 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3517 1.1673 -0.0005 5 6 1.3854 2.4723 -0.0006 6 6 2.3796 3.6353 -0.0011 7 6 1.6146 4.9603 -0.0011 8 6 2.6088 6.1232 -0.0009 9 6 1.8552 7.4283 -0.0015 10 1 0.7752 7.4283 -0.0023 11 6 2.5446 8.6224 -0.0010 12 7 1.8870 9.7613 -0.0020 13 14 4.4125 8.6224 -0.0003 14 1 4.9081 8.6226 -1.4001 15 1 4.9072 9.8349 0.7002 16 1 4.9073 7.4098 0.6998 17 6 2.1976 -1.2687 0.0006 18 6 2.9150 -1.4586 1.3386 19 6 3.2171 -1.2891 -1.1518 20 6 2.8276 -2.4733 -2.0624 21 6 1.3224 -2.6963 -1.7733 22 6 1.2254 -2.4403 -0.2488 23 1 -0.3633 -0.1024 -1.0225 24 1 -0.3633 -0.8344 0.5999 25 1 -0.3633 0.9367 0.4226 26 1 0.7584 2.5303 0.8892 27 1 0.7590 2.5298 -0.8909 28 1 3.0062 3.5779 0.8889 29 1 3.0062 3.5771 -0.8910 30 1 0.9876 5.0179 -0.8909 31 1 0.9882 5.0181 0.8891 32 1 3.2353 6.0654 0.8891 33 1 3.2355 6.0656 -0.8908 34 1 2.3720 10.6014 -0.0020 35 1 2.1813 -1.4799 2.1444 36 1 3.4668 -2.3985 1.3248 37 1 3.6079 -0.6328 1.4997 38 1 3.1666 -0.3554 -1.7117 39 1 4.2229 -1.4353 -0.7579 40 1 3.4023 -3.3614 -1.7993 41 1 2.9809 -2.2175 -3.1108 42 1 1.0304 -3.7189 -2.0125 43 1 0.7129 -1.9804 -2.3247 44 1 1.5414 -3.3230 0.3072 45 1 0.2097 -2.1589 0.0290 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588979282.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:04 Heat of formation + Delta-G solvation = -79.626710 kcal Electronic energy + Delta-G solvation = -20873.312420 eV Core-core repulsion = 17888.988962 eV Total energy + Delta-G solvation = -2984.323458 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.59381 -38.96590 -36.64709 -35.56158 -34.58489 -32.31402 -31.28756 -30.01113 -27.79504 -27.06921 -25.92407 -23.95526 -21.89846 -21.56015 -21.22537 -19.19096 -18.86034 -17.67293 -17.43186 -17.02139 -16.34553 -16.15728 -15.68027 -15.34565 -14.88574 -14.61201 -14.40367 -14.26436 -13.80607 -13.73204 -13.65738 -13.53278 -13.25200 -12.98375 -12.84708 -12.54668 -12.30069 -12.08479 -12.05658 -11.93742 -11.76201 -11.66741 -11.60829 -11.50445 -11.38627 -11.34878 -11.26128 -10.77069 -10.51285 -9.56475 -8.30776 -6.33798 1.33736 1.35100 1.48163 1.69856 2.05657 2.34980 3.04584 3.42509 3.68661 3.79108 3.91071 4.01438 4.11580 4.24628 4.33111 4.40676 4.47639 4.53450 4.58657 4.62008 4.67747 4.73517 4.74859 4.79850 4.84185 4.85652 4.91390 5.02695 5.07324 5.08953 5.12873 5.18723 5.21111 5.26319 5.31886 5.34847 5.45595 5.58173 5.64093 5.67355 5.80993 6.28496 6.46824 6.74010 7.27743 7.31112 8.85905 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.037236 B = 0.003279 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.780016 B = 8537.066912 C = 8811.191247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.608 5.608 3 C 0.507 3.493 4 O -0.577 6.577 5 C -0.130 4.130 6 C -0.095 4.095 7 C -0.093 4.093 8 C -0.016 4.016 9 C -0.531 4.531 10 H 0.038 0.962 11 C 0.005 3.995 12 N -0.950 5.950 13 Si 0.947 3.053 14 H -0.267 1.267 15 H -0.280 1.280 16 H -0.254 1.254 17 C 0.163 3.837 18 C -0.152 4.152 19 C -0.120 4.120 20 C -0.124 4.124 21 C -0.118 4.118 22 C -0.128 4.128 23 H 0.069 0.931 24 H 0.096 0.904 25 H 0.085 0.915 26 H 0.112 0.888 27 H 0.110 0.890 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.013 0.987 33 H 0.011 0.989 34 H 0.266 0.734 35 H 0.063 0.937 36 H 0.077 0.923 37 H 0.036 0.964 38 H 0.042 0.958 39 H 0.054 0.946 40 H 0.076 0.924 41 H 0.061 0.939 42 H 0.086 0.914 43 H 0.064 0.936 44 H 0.091 0.909 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.886 -31.027 -0.847 31.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.341 5.341 3 C 0.297 3.703 4 O -0.456 6.456 5 C -0.170 4.170 6 C -0.133 4.133 7 C -0.130 4.130 8 C -0.054 4.054 9 C -0.569 4.569 10 H 0.056 0.944 11 C -0.192 4.192 12 N -0.591 5.591 13 Si 0.771 3.229 14 H -0.192 1.192 15 H -0.206 1.206 16 H -0.177 1.177 17 C 0.079 3.921 18 C -0.210 4.210 19 C -0.159 4.159 20 C -0.162 4.162 21 C -0.155 4.155 22 C -0.165 4.165 23 H 0.087 0.913 24 H 0.114 0.886 25 H 0.104 0.896 26 H 0.130 0.870 27 H 0.128 0.872 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.031 0.969 33 H 0.030 0.970 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.096 0.904 37 H 0.055 0.945 38 H 0.061 0.939 39 H 0.073 0.927 40 H 0.094 0.906 41 H 0.080 0.920 42 H 0.105 0.895 43 H 0.082 0.918 44 H 0.110 0.890 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.251 -30.865 -0.843 31.047 hybrid contribution 0.937 0.978 -0.023 1.355 sum -2.313 -29.886 -0.865 29.988 Atomic orbital electron populations 1.22188 0.77713 1.04806 1.03327 1.48193 1.08128 1.04825 1.72948 1.21078 0.87787 0.86358 0.75104 1.90659 1.15920 1.88053 1.51011 1.21717 0.99119 0.90281 1.05873 1.21261 0.97441 0.93101 1.01521 1.21332 0.97748 0.92654 1.01287 1.19565 0.95978 0.93813 0.96002 1.21542 0.94006 0.91311 1.49992 0.94403 1.25981 1.03873 0.95095 0.94264 1.70057 1.37970 0.98234 1.52876 0.85701 0.79806 0.78230 0.79192 1.19207 1.20599 1.17746 1.21170 0.92348 0.83713 0.94865 1.22155 1.00480 1.01866 0.96525 1.22445 0.98445 0.98585 0.96413 1.22424 0.97402 0.97499 0.98860 1.22473 0.95335 1.02372 0.95350 1.22923 0.99925 0.96350 0.97302 0.91255 0.88580 0.89632 0.86962 0.87210 0.93202 0.93223 0.92498 0.92452 0.96874 0.97021 0.92472 0.91762 0.90441 0.94513 0.93930 0.92733 0.90563 0.92022 0.89513 0.91754 0.89017 0.88267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.68 9.22 127.77 1.18 1.86 16 2 N -0.61 -11.90 2.82 -795.47 -2.24 -14.14 16 3 C 0.51 13.78 6.78 87.65 0.59 14.37 16 4 O -0.58 -20.53 13.10 -3.01 -0.04 -20.57 16 5 C -0.13 -3.24 4.17 29.85 0.12 -3.12 16 6 C -0.10 -3.23 4.50 30.59 0.14 -3.10 16 7 C -0.09 -3.66 5.15 30.59 0.16 -3.50 16 8 C -0.02 -0.80 4.04 29.85 0.12 -0.68 16 9 C -0.53 -31.67 9.66 25.60 0.25 -31.43 16 10 H 0.04 2.43 7.99 -2.91 -0.02 2.41 16 11 C 0.00 0.28 5.47 84.65 0.46 0.74 16 12 N -0.95 -61.02 13.96 21.45 0.30 -60.72 16 13 Si 0.95 46.56 27.47 68.60 1.88 48.45 16 14 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 15 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 16 H -0.25 -11.93 6.54 99.48 0.65 -11.28 16 17 C 0.16 2.98 0.89 4.33 0.00 2.98 16 18 C -0.15 -2.94 8.20 71.98 0.59 -2.35 16 19 C -0.12 -2.62 5.10 31.36 0.16 -2.46 16 20 C -0.12 -1.87 6.83 31.71 0.22 -1.65 16 21 C -0.12 -1.29 6.91 31.89 0.22 -1.07 16 22 C -0.13 -1.38 5.62 31.67 0.18 -1.20 16 23 H 0.07 0.64 8.14 -2.39 -0.02 0.63 16 24 H 0.10 0.66 6.04 -2.39 -0.01 0.65 16 25 H 0.09 0.86 6.24 -2.39 -0.01 0.85 16 26 H 0.11 2.30 7.42 -2.39 -0.02 2.28 16 27 H 0.11 2.30 8.11 -2.38 -0.02 2.28 16 28 H 0.05 1.81 8.10 -2.39 -0.02 1.79 16 29 H 0.05 1.81 8.10 -2.39 -0.02 1.79 16 30 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 31 H 0.06 2.19 8.14 -2.38 -0.02 2.18 16 32 H 0.01 0.65 7.20 -2.39 -0.02 0.63 16 33 H 0.01 0.57 7.57 -2.39 -0.02 0.55 16 34 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 35 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.04 0.97 6.85 -2.39 -0.02 0.95 16 38 H 0.04 1.18 6.62 -2.39 -0.02 1.17 16 39 H 0.05 1.32 7.67 -2.39 -0.02 1.30 16 40 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.09 0.78 7.85 -2.39 -0.02 0.77 16 45 H 0.10 0.75 4.95 -2.39 -0.01 0.74 16 Total: -1.00 -74.79 342.95 5.17 -69.62 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: 0.87 Total: 7.95 kcal Atomic # 6 Polarization: -34.98 SS G_CDS: 4.39 Total: -30.59 kcal Atomic # 7 Polarization: -72.92 SS G_CDS: -1.94 Total: -74.86 kcal Atomic # 8 Polarization: -20.53 SS G_CDS: -0.04 Total: -20.57 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 1.88 Total: 48.45 kcal Total: -74.79 5.17 -69.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588979282.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.006 kcal (2) G-P(sol) polarization free energy of solvation -74.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds