Wall clock time and date at job start Mon Mar 30 2020 07:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00168 * 2 1 4 4 H 1.48495 * 109.46825 * 90.00729 * 3 2 1 5 5 H 1.48507 * 109.46921 * 210.00282 * 3 2 1 6 6 H 1.48499 * 109.47148 * 330.00235 * 3 2 1 7 7 C 1.37885 * 119.99708 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99899 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99913 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.47147 * 180.02562 * 9 7 2 11 11 C 1.46905 * 111.00236 * 170.00091 * 10 9 7 12 12 C 1.52998 * 109.46695 * 283.79156 * 11 10 9 13 13 C 1.53003 * 109.46642 * 185.25339 * 12 11 10 14 14 C 1.52998 * 109.47015 * 179.97438 * 13 12 11 15 15 H 1.09003 * 110.45910 * 52.39913 * 14 13 12 16 16 C 1.54516 * 110.51268 * 175.00131 * 14 13 12 17 17 C 1.54476 * 104.05976 * 118.64555 * 16 14 13 18 18 O 1.44428 * 104.80813 * 23.98000 * 17 16 14 19 19 C 1.44422 * 105.27148 * 319.48886 * 18 17 16 20 20 C 1.46903 * 110.99593 * 293.95108 * 10 9 7 21 21 C 1.53006 * 109.46743 * 163.64663 * 20 10 9 22 22 C 1.52989 * 117.50030 * 245.50447 * 21 20 10 23 23 C 1.52994 * 117.49664 * 176.88115 * 21 20 10 24 24 H 0.96996 * 120.00550 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47108 * 300.00367 * 9 7 2 26 26 H 1.09008 * 109.47336 * 59.99979 * 9 7 2 27 27 H 1.09000 * 109.46589 * 43.79162 * 11 10 9 28 28 H 1.08996 * 109.46785 * 163.78831 * 11 10 9 29 29 H 1.08991 * 109.47166 * 305.25289 * 12 11 10 30 30 H 1.09003 * 109.47503 * 65.26177 * 12 11 10 31 31 H 1.08995 * 109.47747 * 300.00055 * 13 12 11 32 32 H 1.08998 * 109.47352 * 60.00349 * 13 12 11 33 33 H 1.08997 * 110.51003 * 237.28741 * 16 14 13 34 34 H 1.08996 * 110.50708 * 0.02562 * 16 14 13 35 35 H 1.08997 * 110.37219 * 142.81223 * 17 16 14 36 36 H 1.09005 * 110.37214 * 265.03549 * 17 16 14 37 37 H 1.09002 * 110.37454 * 281.67954 * 19 18 17 38 38 H 1.09002 * 110.37163 * 159.34466 * 19 18 17 39 39 H 1.09000 * 109.47269 * 283.64668 * 20 10 9 40 40 H 1.09003 * 109.46988 * 43.65506 * 20 10 9 41 41 H 1.09001 * 115.54452 * 31.21286 * 21 20 10 42 42 H 1.09000 * 117.50072 * 359.97438 * 22 21 20 43 43 H 1.09006 * 117.50236 * 145.02453 * 22 21 20 44 44 H 1.09002 * 117.49924 * 214.98223 * 23 21 20 45 45 H 1.09001 * 117.50409 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0462 1.4000 5 1 3.5467 1.4401 -0.7001 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2054 -3.6158 -0.0005 11 6 1.5209 -4.8936 0.2376 12 6 1.1674 -5.0139 1.7213 13 6 0.5733 -6.3974 1.9934 14 6 0.2203 -6.5180 3.4772 15 1 -0.4024 -5.6798 3.7900 16 6 -0.4961 -7.8583 3.7561 17 6 0.4387 -8.5841 4.7488 18 8 1.1888 -7.5286 5.3885 19 6 1.5032 -6.5927 4.3345 20 6 2.9707 -3.6541 -1.2539 21 6 4.2051 -4.5394 -1.0709 22 6 5.5761 -3.8653 -1.1521 23 6 5.0983 -4.7672 -2.2919 24 1 -0.4851 -0.8400 -0.0004 25 1 0.6245 -2.5570 0.8897 26 1 0.6238 -2.5567 -0.8903 27 1 0.6087 -4.9335 -0.3578 28 1 2.1771 -5.7159 -0.0475 29 1 2.0675 -4.8806 2.3212 30 1 0.4384 -4.2474 1.9845 31 1 -0.3268 -6.5308 1.3934 32 1 1.3022 -7.1639 1.7303 33 1 -1.4719 -7.6828 4.2090 34 1 -0.5984 -8.4351 2.8369 35 1 -0.1450 -9.1352 5.4860 36 1 1.1088 -9.2584 4.2153 37 1 2.3378 -6.9600 3.7372 38 1 1.7372 -5.6139 4.7534 39 1 2.3459 -4.0616 -2.0488 40 1 3.2839 -2.6444 -1.5194 41 1 4.0910 -5.3658 -0.3694 42 1 5.5988 -2.7913 -1.3364 43 1 6.3645 -4.2483 -0.5040 44 1 5.5723 -5.7435 -2.3937 45 1 4.8069 -4.2861 -3.2256 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592071770.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:21 Heat of formation + Delta-G solvation = -42.400679 kcal Electronic energy + Delta-G solvation = -20721.631568 eV Core-core repulsion = 17738.922351 eV Total energy + Delta-G solvation = -2982.709217 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.57971 -37.96781 -36.03524 -34.43317 -32.70488 -30.99370 -28.98119 -27.15341 -25.99230 -23.89257 -22.95317 -22.08526 -21.77797 -20.60617 -20.28756 -19.49243 -16.87676 -16.51620 -15.82814 -15.57822 -15.48568 -14.82007 -14.43577 -14.10167 -13.76140 -13.60902 -13.40758 -12.91646 -12.67515 -12.36027 -12.18079 -11.80314 -11.57297 -11.50014 -11.32856 -11.23234 -10.92677 -10.81768 -10.70495 -10.66408 -10.42669 -10.34106 -10.13004 -10.08396 -9.87140 -9.80697 -9.49434 -8.63645 -8.35781 -7.30524 -6.35818 -4.04355 3.44758 3.47686 3.63505 3.89098 4.11103 4.44128 4.53201 4.63154 4.73939 4.85286 4.97650 5.13523 5.17938 5.28335 5.29686 5.37431 5.39611 5.43501 5.55611 5.57819 5.69347 5.73828 5.76448 5.83186 5.88471 5.89626 5.94968 6.04464 6.12289 6.15123 6.18983 6.24708 6.34995 6.41956 6.54028 6.66836 6.71874 6.80170 7.03769 7.10256 7.84278 8.03281 8.34559 8.61096 8.88537 9.66200 11.03221 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.013972 B = 0.004660 C = 0.003820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.500367 B = 6007.320250 C = 7328.070674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.014 3.986 3 Si 1.073 2.927 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.286 1.286 7 C -0.587 4.587 8 H 0.057 0.943 9 C 0.183 3.817 10 N -0.527 5.527 11 C 0.054 3.946 12 C -0.113 4.113 13 C -0.107 4.107 14 C -0.121 4.121 15 H 0.084 0.916 16 C -0.153 4.153 17 C 0.044 3.956 18 O -0.380 6.380 19 C 0.049 3.951 20 C 0.092 3.908 21 C -0.136 4.136 22 C -0.174 4.174 23 C -0.191 4.191 24 H 0.266 0.734 25 H 0.023 0.977 26 H -0.023 1.023 27 H 0.021 0.979 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.057 0.943 37 H 0.062 0.938 38 H 0.093 0.907 39 H 0.020 0.980 40 H 0.088 0.912 41 H 0.099 0.901 42 H 0.095 0.905 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.236 -15.709 2.813 16.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.189 4.189 3 Si 0.901 3.099 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.625 4.625 8 H 0.076 0.924 9 C 0.057 3.943 10 N -0.251 5.251 11 C -0.075 4.075 12 C -0.151 4.151 13 C -0.145 4.145 14 C -0.140 4.140 15 H 0.103 0.897 16 C -0.190 4.190 17 C -0.033 4.033 18 O -0.299 6.299 19 C -0.027 4.027 20 C -0.036 4.036 21 C -0.155 4.155 22 C -0.211 4.211 23 C -0.228 4.228 24 H 0.077 0.923 25 H 0.041 0.959 26 H -0.005 1.005 27 H 0.039 0.961 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.105 0.895 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.112 0.888 39 H 0.038 0.962 40 H 0.106 0.894 41 H 0.117 0.883 42 H 0.113 0.887 43 H 0.105 0.895 44 H 0.105 0.895 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.427 -13.954 3.418 14.769 hybrid contribution -0.503 -1.856 -0.904 2.125 sum 2.924 -15.810 2.514 16.274 Atomic orbital electron populations 1.70763 1.06910 1.30374 1.47185 1.25820 0.96476 1.02652 0.93991 0.83483 0.74584 0.74991 0.76801 1.21419 1.21484 1.21140 1.22010 0.94832 0.90971 1.54714 0.92429 1.19846 0.90694 0.89017 0.94713 1.61953 1.27233 1.02417 1.33466 1.22073 0.96462 0.93263 0.95670 1.21566 1.01233 0.95472 0.96801 1.21629 1.00767 0.98176 0.93972 1.22569 0.96980 0.98016 0.96399 0.89724 1.23027 0.99624 0.96437 0.99942 1.23383 0.93425 0.90842 0.95619 1.89111 1.74187 1.34657 1.31951 1.23569 0.96403 0.93934 0.88835 1.21566 0.92154 0.99538 0.90352 1.22340 0.92100 1.01464 0.99566 1.22930 0.97843 0.98994 1.01330 1.22935 1.05243 1.00891 0.93771 0.92347 0.95915 1.00523 0.96064 0.92219 0.91265 0.91742 0.91909 0.92084 0.90810 0.90460 0.89477 0.92507 0.92006 0.88842 0.96175 0.89391 0.88290 0.88693 0.89508 0.89501 0.89175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.85 13.65 55.43 0.76 -27.10 16 2 C 0.01 0.40 5.46 -17.82 -0.10 0.31 16 3 Si 1.07 25.40 29.90 -169.99 -5.08 20.32 16 4 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.59 -16.51 8.28 -34.44 -0.29 -16.79 16 8 H 0.06 1.63 7.26 -52.49 -0.38 1.25 16 9 C 0.18 4.68 3.86 -4.98 -0.02 4.66 16 10 N -0.53 -11.19 4.38 -236.06 -1.03 -12.22 16 11 C 0.05 0.94 4.78 -3.82 -0.02 0.92 16 12 C -0.11 -1.76 5.13 -26.73 -0.14 -1.90 16 13 C -0.11 -1.30 4.43 -26.73 -0.12 -1.41 16 14 C -0.12 -1.39 3.11 -89.05 -0.28 -1.67 16 15 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 16 C -0.15 -1.47 6.74 -25.16 -0.17 -1.64 16 17 C 0.04 0.44 7.63 37.93 0.29 0.73 16 18 O -0.38 -4.96 11.65 -35.23 -0.41 -5.37 16 19 C 0.05 0.59 6.51 37.93 0.25 0.84 16 20 C 0.09 1.80 5.08 -3.82 -0.02 1.79 16 21 C -0.14 -2.19 5.58 -90.62 -0.51 -2.70 16 22 C -0.17 -2.58 10.18 -26.74 -0.27 -2.86 16 23 C -0.19 -2.59 10.25 -26.74 -0.27 -2.86 16 24 H 0.27 8.08 7.22 -40.82 -0.29 7.79 16 25 H 0.02 0.61 6.61 -51.93 -0.34 0.27 16 26 H -0.02 -0.62 7.99 -51.92 -0.41 -1.04 16 27 H 0.02 0.38 7.99 -51.93 -0.42 -0.03 16 28 H 0.06 0.93 6.48 -51.93 -0.34 0.59 16 29 H 0.07 1.11 7.63 -51.93 -0.40 0.71 16 30 H 0.06 1.14 6.98 -51.93 -0.36 0.78 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.68 7.96 -51.93 -0.41 0.27 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.66 7.73 -51.93 -0.40 0.26 16 35 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.71 7.74 -51.93 -0.40 0.31 16 38 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.02 0.39 8.05 -51.93 -0.42 -0.03 16 40 H 0.09 1.94 6.32 -51.93 -0.33 1.61 16 41 H 0.10 1.55 6.90 -51.93 -0.36 1.19 16 42 H 0.09 1.50 8.04 -51.93 -0.42 1.08 16 43 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 44 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 352.11 15.07 5.31 5.31 Total: -1.00 -30.47 352.11 -10.41 -40.87 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -8.28 Total: 0.78 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: -1.66 Total: -22.58 kcal Atomic # 7 Polarization: -39.04 SS G_CDS: -0.28 Total: -39.32 kcal Atomic # 8 Polarization: -4.96 SS G_CDS: -0.41 Total: -5.37 kcal Atomic # 14 Polarization: 25.40 SS G_CDS: -5.08 Total: 20.32 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.47 -10.41 -40.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592071770.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.529 kcal (2) G-P(sol) polarization free energy of solvation -30.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds