Wall clock time and date at job start Mon Mar 30 2020 07:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00168 * 2 1 4 4 H 1.48495 * 109.46825 * 90.00729 * 3 2 1 5 5 H 1.48507 * 109.46921 * 210.00282 * 3 2 1 6 6 H 1.48499 * 109.47148 * 330.00235 * 3 2 1 7 7 C 1.37885 * 119.99708 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99899 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99913 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.47147 * 180.02562 * 9 7 2 11 11 C 1.46905 * 111.00236 * 170.00091 * 10 9 7 12 12 C 1.52998 * 109.46695 * 283.79156 * 11 10 9 13 13 C 1.53003 * 109.46642 * 185.25339 * 12 11 10 14 14 C 1.52998 * 109.47015 * 179.97438 * 13 12 11 15 15 H 1.09003 * 110.45910 * 52.39913 * 14 13 12 16 16 C 1.54516 * 110.51268 * 175.00131 * 14 13 12 17 17 C 1.54476 * 104.05976 * 118.64555 * 16 14 13 18 18 O 1.44428 * 104.80813 * 23.98000 * 17 16 14 19 19 C 1.44422 * 105.27148 * 319.48886 * 18 17 16 20 20 C 1.46903 * 110.99593 * 293.95108 * 10 9 7 21 21 C 1.53006 * 109.46743 * 163.64663 * 20 10 9 22 22 C 1.52989 * 117.50030 * 245.50447 * 21 20 10 23 23 C 1.52994 * 117.49664 * 176.88115 * 21 20 10 24 24 H 0.96996 * 120.00550 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47108 * 300.00367 * 9 7 2 26 26 H 1.09008 * 109.47336 * 59.99979 * 9 7 2 27 27 H 1.09000 * 109.46589 * 43.79162 * 11 10 9 28 28 H 1.08996 * 109.46785 * 163.78831 * 11 10 9 29 29 H 1.08991 * 109.47166 * 305.25289 * 12 11 10 30 30 H 1.09003 * 109.47503 * 65.26177 * 12 11 10 31 31 H 1.08995 * 109.47747 * 300.00055 * 13 12 11 32 32 H 1.08998 * 109.47352 * 60.00349 * 13 12 11 33 33 H 1.08997 * 110.51003 * 237.28741 * 16 14 13 34 34 H 1.08996 * 110.50708 * 0.02562 * 16 14 13 35 35 H 1.08997 * 110.37219 * 142.81223 * 17 16 14 36 36 H 1.09005 * 110.37214 * 265.03549 * 17 16 14 37 37 H 1.09002 * 110.37454 * 281.67954 * 19 18 17 38 38 H 1.09002 * 110.37163 * 159.34466 * 19 18 17 39 39 H 1.09000 * 109.47269 * 283.64668 * 20 10 9 40 40 H 1.09003 * 109.46988 * 43.65506 * 20 10 9 41 41 H 1.09001 * 115.54452 * 31.21286 * 21 20 10 42 42 H 1.09000 * 117.50072 * 359.97438 * 22 21 20 43 43 H 1.09006 * 117.50236 * 145.02453 * 22 21 20 44 44 H 1.09002 * 117.49924 * 214.98223 * 23 21 20 45 45 H 1.09001 * 117.50409 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0462 1.4000 5 1 3.5467 1.4401 -0.7001 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2054 -3.6158 -0.0005 11 6 1.5209 -4.8936 0.2376 12 6 1.1674 -5.0139 1.7213 13 6 0.5733 -6.3974 1.9934 14 6 0.2203 -6.5180 3.4772 15 1 -0.4024 -5.6798 3.7900 16 6 -0.4961 -7.8583 3.7561 17 6 0.4387 -8.5841 4.7488 18 8 1.1888 -7.5286 5.3885 19 6 1.5032 -6.5927 4.3345 20 6 2.9707 -3.6541 -1.2539 21 6 4.2051 -4.5394 -1.0709 22 6 5.5761 -3.8653 -1.1521 23 6 5.0983 -4.7672 -2.2919 24 1 -0.4851 -0.8400 -0.0004 25 1 0.6245 -2.5570 0.8897 26 1 0.6238 -2.5567 -0.8903 27 1 0.6087 -4.9335 -0.3578 28 1 2.1771 -5.7159 -0.0475 29 1 2.0675 -4.8806 2.3212 30 1 0.4384 -4.2474 1.9845 31 1 -0.3268 -6.5308 1.3934 32 1 1.3022 -7.1639 1.7303 33 1 -1.4719 -7.6828 4.2090 34 1 -0.5984 -8.4351 2.8369 35 1 -0.1450 -9.1352 5.4860 36 1 1.1088 -9.2584 4.2153 37 1 2.3378 -6.9600 3.7372 38 1 1.7372 -5.6139 4.7534 39 1 2.3459 -4.0616 -2.0488 40 1 3.2839 -2.6444 -1.5194 41 1 4.0910 -5.3658 -0.3694 42 1 5.5988 -2.7913 -1.3364 43 1 6.3645 -4.2483 -0.5040 44 1 5.5723 -5.7435 -2.3937 45 1 4.8069 -4.2861 -3.2256 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592071770.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:20 Heat of formation + Delta-G solvation = -60.295733 kcal Electronic energy + Delta-G solvation = -20722.407556 eV Core-core repulsion = 17738.922351 eV Total energy + Delta-G solvation = -2983.485204 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.49874 -39.44939 -37.36747 -35.79983 -34.64961 -32.10901 -30.01022 -29.06290 -27.35497 -25.55301 -24.14667 -23.29712 -23.11809 -21.97746 -21.28288 -20.89916 -18.98826 -17.41863 -16.95871 -16.82051 -16.55592 -16.24401 -15.87997 -15.62130 -15.28455 -15.13800 -14.52102 -14.25411 -14.04548 -13.73958 -13.62002 -13.27488 -13.02342 -12.84133 -12.64889 -12.51611 -12.36097 -12.34267 -12.11106 -11.94540 -11.68150 -11.61718 -11.51475 -11.32286 -11.13364 -10.80664 -10.75947 -10.74335 -10.56216 -9.08837 -8.67947 -6.38079 1.51440 1.60428 1.78240 2.54279 2.84386 3.04126 3.14321 3.24216 3.61220 3.72588 3.87551 3.94767 4.01335 4.06913 4.18086 4.23916 4.29066 4.35834 4.45798 4.52297 4.53227 4.65191 4.67153 4.73019 4.76692 4.79702 4.84002 4.85150 4.89170 4.95247 5.00482 5.03779 5.08525 5.09832 5.17512 5.29678 5.33403 5.38404 5.40634 5.81746 5.85702 6.01496 6.42177 6.43569 6.66789 7.41918 8.70525 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.013972 B = 0.004660 C = 0.003820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.500367 B = 6007.320250 C = 7328.070674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.037 4.037 3 Si 1.120 2.880 4 H -0.273 1.273 5 H -0.270 1.270 6 H -0.283 1.283 7 C -0.595 4.595 8 H 0.053 0.947 9 C 0.196 3.804 10 N -0.534 5.534 11 C 0.054 3.946 12 C -0.105 4.105 13 C -0.094 4.094 14 C -0.121 4.121 15 H 0.068 0.932 16 C -0.147 4.147 17 C 0.039 3.961 18 O -0.404 6.404 19 C 0.048 3.952 20 C 0.095 3.905 21 C -0.151 4.151 22 C -0.178 4.178 23 C -0.164 4.164 24 H 0.252 0.748 25 H 0.004 0.996 26 H -0.051 1.051 27 H 0.013 0.987 28 H 0.089 0.911 29 H 0.064 0.936 30 H 0.033 0.967 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.102 0.898 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.018 0.982 40 H 0.055 0.945 41 H 0.110 0.890 42 H 0.078 0.922 43 H 0.106 0.894 44 H 0.117 0.883 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.806 -17.543 2.623 18.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.234 4.234 3 Si 0.941 3.059 4 H -0.199 1.199 5 H -0.195 1.195 6 H -0.208 1.208 7 C -0.633 4.633 8 H 0.071 0.929 9 C 0.070 3.930 10 N -0.257 5.257 11 C -0.074 4.074 12 C -0.143 4.143 13 C -0.132 4.132 14 C -0.140 4.140 15 H 0.087 0.913 16 C -0.185 4.185 17 C -0.037 4.037 18 O -0.324 6.324 19 C -0.029 4.029 20 C -0.033 4.033 21 C -0.170 4.170 22 C -0.215 4.215 23 C -0.202 4.202 24 H 0.062 0.938 25 H 0.022 0.978 26 H -0.033 1.033 27 H 0.031 0.969 28 H 0.107 0.893 29 H 0.083 0.917 30 H 0.051 0.949 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.112 0.888 35 H 0.121 0.879 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.100 0.900 39 H 0.036 0.964 40 H 0.074 0.926 41 H 0.128 0.872 42 H 0.096 0.904 43 H 0.125 0.875 44 H 0.135 0.865 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.004 -15.825 3.227 16.909 hybrid contribution -0.995 -1.341 -0.857 1.877 sum 4.009 -17.166 2.370 17.787 Atomic orbital electron populations 1.70896 1.07926 1.29572 1.49281 1.27353 0.96505 1.06583 0.92937 0.82893 0.74129 0.71046 0.77785 1.19876 1.19468 1.20820 1.22299 0.94739 0.92261 1.54007 0.92901 1.19516 0.90736 0.90361 0.92412 1.61936 1.26420 1.02863 1.34497 1.22199 0.96389 0.92066 0.96696 1.21485 1.00360 0.97056 0.95408 1.21524 1.01223 0.96025 0.94465 1.22518 0.96903 0.98836 0.95775 0.91308 1.23011 0.99481 0.95193 1.00771 1.23604 0.93622 0.90335 0.96146 1.89086 1.74789 1.35613 1.32891 1.23565 0.96866 0.93576 0.88852 1.21506 0.93562 0.98722 0.89522 1.22187 0.90919 1.01604 1.02282 1.22989 0.97385 0.98486 1.02683 1.23031 1.02706 1.01803 0.92632 0.93830 0.97834 1.03312 0.96915 0.89320 0.91706 0.94857 0.91386 0.90022 0.90410 0.88751 0.87938 0.91103 0.91171 0.89953 0.96395 0.92614 0.87182 0.90382 0.87524 0.86523 0.89198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.85 13.65 21.45 0.29 -58.56 16 2 C -0.04 -2.14 5.46 84.66 0.46 -1.68 16 3 Si 1.12 51.27 29.90 68.60 2.05 53.32 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 5 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 6 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 7 C -0.59 -34.51 8.28 25.60 0.21 -34.30 16 8 H 0.05 3.06 7.26 -2.91 -0.02 3.04 16 9 C 0.20 10.55 3.86 85.55 0.33 10.88 16 10 N -0.53 -23.14 4.38 -900.76 -3.94 -27.08 16 11 C 0.05 1.88 4.78 86.30 0.41 2.30 16 12 C -0.11 -3.30 5.13 30.59 0.16 -3.14 16 13 C -0.09 -2.14 4.43 30.59 0.14 -2.00 16 14 C -0.12 -2.68 3.11 -9.78 -0.03 -2.71 16 15 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 16 C -0.15 -2.51 6.74 31.61 0.21 -2.30 16 17 C 0.04 0.68 7.63 72.48 0.55 1.23 16 18 O -0.40 -10.08 11.65 -148.98 -1.74 -11.82 16 19 C 0.05 1.12 6.51 72.48 0.47 1.59 16 20 C 0.09 3.75 5.08 86.30 0.44 4.19 16 21 C -0.15 -4.60 5.58 -10.80 -0.06 -4.66 16 22 C -0.18 -4.95 10.18 30.59 0.31 -4.64 16 23 C -0.16 -3.96 10.25 30.59 0.31 -3.65 16 24 H 0.25 16.09 7.22 -92.71 -0.67 15.42 16 25 H 0.00 0.21 6.61 -2.39 -0.02 0.19 16 26 H -0.05 -2.95 7.99 -2.38 -0.02 -2.96 16 27 H 0.01 0.46 7.99 -2.39 -0.02 0.44 16 28 H 0.09 2.57 6.48 -2.39 -0.02 2.56 16 29 H 0.06 2.08 7.63 -2.39 -0.02 2.06 16 30 H 0.03 1.23 6.98 -2.39 -0.02 1.22 16 31 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.08 1.56 7.96 -2.39 -0.02 1.54 16 33 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.09 1.31 7.73 -2.39 -0.02 1.29 16 35 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 37 H 0.07 1.50 7.74 -2.39 -0.02 1.48 16 38 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.02 0.70 8.05 -2.39 -0.02 0.68 16 40 H 0.06 2.53 6.32 -2.39 -0.02 2.52 16 41 H 0.11 3.12 6.90 -2.39 -0.02 3.10 16 42 H 0.08 2.42 8.04 -2.39 -0.02 2.40 16 43 H 0.11 2.53 8.14 -2.38 -0.02 2.51 16 44 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 45 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -67.80 352.11 1.61 -66.19 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: 1.02 Total: 16.83 kcal Atomic # 6 Polarization: -42.81 SS G_CDS: 3.92 Total: -38.89 kcal Atomic # 7 Polarization: -81.99 SS G_CDS: -3.65 Total: -85.64 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: -1.74 Total: -11.82 kcal Atomic # 14 Polarization: 51.27 SS G_CDS: 2.05 Total: 53.32 kcal Total: -67.80 1.61 -66.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592071770.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.898 kcal (2) G-P(sol) polarization free energy of solvation -67.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds