Wall clock time and date at job start Mon Mar 30 2020 07:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99994 * 2 1 4 4 H 1.48504 * 109.47189 * 269.99687 * 3 2 1 5 5 H 1.48493 * 109.47340 * 29.99561 * 3 2 1 6 6 H 1.48504 * 109.47100 * 149.99981 * 3 2 1 7 7 C 1.37878 * 119.99969 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99736 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00089 * 0.02562 * 7 2 1 10 10 N 1.46895 * 109.47425 * 175.08466 * 9 7 2 11 11 C 1.46903 * 110.99803 * 75.64416 * 10 9 7 12 12 C 1.52999 * 109.47090 * 190.00077 * 11 10 9 13 13 C 1.52994 * 109.47195 * 180.02562 * 12 11 10 14 14 C 1.52999 * 109.47195 * 179.97438 * 13 12 11 15 15 H 1.08999 * 110.80797 * 305.69741 * 14 13 12 16 16 C 1.54816 * 110.90997 * 182.06912 * 14 13 12 17 17 C 1.54094 * 104.18935 * 220.92287 * 16 14 13 18 18 O 1.43740 * 107.29637 * 357.97150 * 17 16 14 19 19 C 1.44418 * 107.00171 * 26.48516 * 18 17 16 20 20 C 1.46892 * 111.00032 * 199.60077 * 10 9 7 21 21 C 1.53001 * 109.47270 * 75.36929 * 20 10 9 22 22 C 1.53004 * 117.49677 * 243.48012 * 21 20 10 23 23 C 1.52998 * 117.49877 * 174.81899 * 21 20 10 24 24 H 0.96997 * 119.99514 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46535 * 295.08620 * 9 7 2 26 26 H 1.09000 * 109.47123 * 55.08137 * 9 7 2 27 27 H 1.08993 * 109.47459 * 310.00143 * 11 10 9 28 28 H 1.08997 * 109.46948 * 70.00503 * 11 10 9 29 29 H 1.09003 * 109.46923 * 300.00322 * 12 11 10 30 30 H 1.09006 * 109.47050 * 60.00198 * 12 11 10 31 31 H 1.09003 * 109.47053 * 299.99759 * 13 12 11 32 32 H 1.08997 * 109.47291 * 60.00151 * 13 12 11 33 33 H 1.08998 * 110.48532 * 339.60113 * 16 14 13 34 34 H 1.09001 * 110.48765 * 102.24597 * 16 14 13 35 35 H 1.08998 * 109.88038 * 117.39490 * 17 16 14 36 36 H 1.09004 * 109.88409 * 238.39421 * 17 16 14 37 37 H 1.09000 * 110.65473 * 201.48048 * 19 18 17 38 38 H 1.09000 * 110.59892 * 78.47499 * 19 18 17 39 39 H 1.09002 * 109.47220 * 195.36400 * 20 10 9 40 40 H 1.09005 * 109.47568 * 315.36752 * 20 10 9 41 41 H 1.08999 * 115.54715 * 29.14633 * 21 20 10 42 42 H 1.08999 * 117.49727 * 359.97438 * 22 21 20 43 43 H 1.08995 * 117.49580 * 145.02102 * 22 21 20 44 44 H 1.09006 * 117.49684 * 214.97800 * 23 21 20 45 45 H 1.08990 * 117.50204 * 359.97159 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5468 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2012 -3.6132 -0.1175 11 6 2.8979 -3.8479 1.1543 12 6 4.0451 -4.8358 0.9327 13 6 4.7702 -5.0807 2.2574 14 6 5.9170 -6.0690 2.0360 15 1 5.5546 -6.9838 1.5669 16 6 6.6425 -6.3810 3.3676 17 6 8.1357 -6.4044 2.9877 18 8 8.2197 -6.1787 1.5706 19 6 7.0470 -5.4253 1.1928 20 6 1.5272 -4.8331 -0.5815 21 6 1.2348 -4.7163 -2.0787 22 6 -0.2320 -4.7118 -2.5139 23 6 0.6421 -5.9399 -2.7804 24 1 -0.4849 0.8401 -0.0004 25 1 0.6918 -2.5957 0.9311 26 1 0.5603 -2.5199 -0.8424 27 1 3.2973 -2.9056 1.5292 28 1 2.1983 -4.2607 1.8810 29 1 3.6456 -5.7782 0.5579 30 1 4.7448 -4.4229 0.2060 31 1 5.1696 -4.1384 2.6327 32 1 4.0704 -5.4937 2.9839 33 1 6.4475 -5.5983 4.1007 34 1 6.3316 -7.3520 3.7530 35 1 8.6662 -5.6155 3.5208 36 1 8.5665 -7.3742 3.2370 37 1 6.8437 -5.5388 0.1279 38 1 7.1673 -4.3733 1.4515 39 1 2.1712 -5.6943 -0.4032 40 1 0.5912 -4.9605 -0.0374 41 1 1.9302 -4.0981 -2.6466 42 1 -0.9887 -4.7925 -1.7335 43 1 -0.5016 -4.0910 -3.3683 44 1 0.9472 -6.1265 -3.8101 45 1 0.4608 -6.8282 -2.1755 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592071771.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:23 Heat of formation + Delta-G solvation = -38.074856 kcal Electronic energy + Delta-G solvation = -20649.834799 eV Core-core repulsion = 17667.313164 eV Total energy + Delta-G solvation = -2982.521635 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.55485 -37.88769 -35.93665 -34.30446 -32.50537 -30.98941 -28.97401 -27.61098 -25.91669 -24.14450 -22.79414 -21.97141 -21.41847 -20.52049 -20.31348 -19.46242 -16.64030 -16.36777 -15.81204 -15.62896 -15.29005 -14.64225 -14.50859 -14.31123 -13.82131 -13.59352 -13.33822 -12.93053 -12.58045 -12.36126 -12.00478 -11.76545 -11.62616 -11.41595 -11.28985 -11.16419 -10.85601 -10.80837 -10.70240 -10.65408 -10.57883 -10.27768 -10.17056 -9.82681 -9.81001 -9.76234 -9.30830 -9.09704 -8.38053 -7.21676 -5.98554 -3.99232 3.33665 3.39695 3.42986 3.84852 4.22919 4.42244 4.45771 4.62776 4.74061 4.87412 4.98718 5.19205 5.26205 5.32416 5.34066 5.37178 5.43286 5.45560 5.59891 5.62448 5.71284 5.75043 5.82989 5.90870 5.93076 5.95917 6.01257 6.08248 6.13930 6.18922 6.27687 6.32297 6.39379 6.48758 6.66026 6.73145 6.77957 6.84921 7.32598 7.40449 7.86061 8.17624 8.28002 8.59797 9.08471 9.64474 11.12043 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.012781 B = 0.004843 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.170107 B = 5780.336459 C = 7443.128864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.055 3.945 3 Si 0.895 3.105 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.502 4.502 8 H 0.062 0.938 9 C 0.193 3.807 10 N -0.534 5.534 11 C 0.064 3.936 12 C -0.117 4.117 13 C -0.108 4.108 14 C -0.119 4.119 15 H 0.083 0.917 16 C -0.154 4.154 17 C 0.047 3.953 18 O -0.384 6.384 19 C 0.050 3.950 20 C 0.083 3.917 21 C -0.127 4.127 22 C -0.179 4.179 23 C -0.191 4.191 24 H 0.260 0.740 25 H -0.015 1.015 26 H 0.038 0.962 27 H 0.080 0.920 28 H 0.016 0.984 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.055 0.945 36 H 0.079 0.921 37 H 0.095 0.905 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.023 0.977 41 H 0.111 0.889 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.829 -13.559 3.451 16.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.146 4.146 3 Si 0.723 3.277 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.541 4.541 8 H 0.080 0.920 9 C 0.068 3.932 10 N -0.258 5.258 11 C -0.064 4.064 12 C -0.155 4.155 13 C -0.146 4.146 14 C -0.137 4.137 15 H 0.102 0.898 16 C -0.192 4.192 17 C -0.030 4.030 18 O -0.303 6.303 19 C -0.026 4.026 20 C -0.046 4.046 21 C -0.146 4.146 22 C -0.216 4.216 23 C -0.228 4.228 24 H 0.069 0.931 25 H 0.003 0.997 26 H 0.056 0.944 27 H 0.099 0.901 28 H 0.034 0.966 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.074 0.926 36 H 0.097 0.903 37 H 0.113 0.887 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.041 0.959 41 H 0.129 0.871 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.106 0.894 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 9.190 -13.360 2.977 16.486 hybrid contribution -0.535 0.846 0.765 1.260 sum 8.654 -12.514 3.742 15.668 Atomic orbital electron populations 1.69962 1.06016 1.26596 1.51381 1.24975 0.94824 0.99172 0.95656 0.86546 0.79706 0.83331 0.78090 1.20692 1.21418 1.19930 1.21174 0.93454 0.89982 1.49443 0.92029 1.19755 0.90261 0.87358 0.95853 1.62085 1.31157 1.04702 1.27822 1.21965 0.94506 0.99031 0.90937 1.21688 0.97992 0.99347 0.96458 1.21544 0.96116 0.98411 0.98558 1.22757 0.96041 0.99698 0.95247 0.89844 1.23021 0.94990 1.02766 0.98409 1.23118 0.96191 1.01075 0.82650 1.88853 1.43903 1.75049 1.22479 1.23714 0.83330 0.95373 1.00212 1.21639 0.96538 0.93820 0.92568 1.22271 0.96117 0.99745 0.96432 1.22966 0.94593 1.00659 1.03381 1.22941 1.06162 0.92666 1.01058 0.93050 0.99702 0.94400 0.90148 0.96602 0.92481 0.91237 0.91518 0.91865 0.90465 0.90713 0.92629 0.90256 0.88713 0.91787 0.91746 0.95900 0.87120 0.89290 0.89215 0.89399 0.89567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.74 13.29 55.43 0.74 -26.01 16 2 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 3 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.50 -14.02 8.61 -34.44 -0.30 -14.32 16 8 H 0.06 1.71 7.65 -52.49 -0.40 1.31 16 9 C 0.19 4.98 4.57 -4.98 -0.02 4.95 16 10 N -0.53 -11.21 4.36 -236.08 -1.03 -12.24 16 11 C 0.06 1.17 4.78 -3.82 -0.02 1.16 16 12 C -0.12 -1.66 5.06 -26.73 -0.14 -1.80 16 13 C -0.11 -1.27 4.61 -26.73 -0.12 -1.39 16 14 C -0.12 -1.25 3.12 -88.61 -0.28 -1.53 16 15 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 16 C -0.15 -1.40 6.60 -25.20 -0.17 -1.57 16 17 C 0.05 0.45 7.70 37.73 0.29 0.74 16 18 O -0.38 -4.86 11.52 -35.23 -0.41 -5.27 16 19 C 0.05 0.58 6.49 38.21 0.25 0.82 16 20 C 0.08 1.49 5.11 -3.83 -0.02 1.47 16 21 C -0.13 -2.19 5.14 -90.62 -0.47 -2.65 16 22 C -0.18 -2.90 10.09 -26.69 -0.27 -3.17 16 23 C -0.19 -2.66 10.25 -26.69 -0.27 -2.93 16 24 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 25 H -0.01 -0.41 8.00 -51.93 -0.42 -0.83 16 26 H 0.04 1.05 7.21 -51.93 -0.37 0.68 16 27 H 0.08 1.63 7.31 -51.93 -0.38 1.25 16 28 H 0.02 0.29 8.12 -51.93 -0.42 -0.13 16 29 H 0.06 0.78 6.25 -51.93 -0.32 0.45 16 30 H 0.07 1.03 7.59 -51.93 -0.39 0.64 16 31 H 0.07 0.80 8.05 -51.93 -0.42 0.38 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.08 0.67 7.86 -51.93 -0.41 0.26 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.09 1.06 8.11 -51.93 -0.42 0.64 16 38 H 0.06 0.74 7.98 -51.93 -0.41 0.32 16 39 H 0.06 1.02 5.88 -51.93 -0.31 0.72 16 40 H 0.02 0.43 7.74 -51.93 -0.40 0.03 16 41 H 0.11 2.07 8.14 -51.93 -0.42 1.64 16 42 H 0.09 1.46 8.03 -51.93 -0.42 1.04 16 43 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 44 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 354.98 15.07 5.35 5.35 Total: -1.00 -29.84 354.98 -10.43 -40.28 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -8.44 Total: -0.02 kcal Atomic # 6 Polarization: -17.13 SS G_CDS: -1.63 Total: -18.76 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: -0.29 Total: -38.24 kcal Atomic # 8 Polarization: -4.86 SS G_CDS: -0.41 Total: -5.27 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.84 -10.43 -40.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592071771.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.201 kcal (2) G-P(sol) polarization free energy of solvation -29.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds