Wall clock time and date at job start Mon Mar 30 2020 07:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99994 * 2 1 4 4 H 1.48504 * 109.47189 * 269.99687 * 3 2 1 5 5 H 1.48493 * 109.47340 * 29.99561 * 3 2 1 6 6 H 1.48504 * 109.47100 * 149.99981 * 3 2 1 7 7 C 1.37878 * 119.99969 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99736 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00089 * 0.02562 * 7 2 1 10 10 N 1.46895 * 109.47425 * 175.08466 * 9 7 2 11 11 C 1.46903 * 110.99803 * 75.64416 * 10 9 7 12 12 C 1.52999 * 109.47090 * 190.00077 * 11 10 9 13 13 C 1.52994 * 109.47195 * 180.02562 * 12 11 10 14 14 C 1.52999 * 109.47195 * 179.97438 * 13 12 11 15 15 H 1.08999 * 110.80797 * 305.69741 * 14 13 12 16 16 C 1.54816 * 110.90997 * 182.06912 * 14 13 12 17 17 C 1.54094 * 104.18935 * 220.92287 * 16 14 13 18 18 O 1.43740 * 107.29637 * 357.97150 * 17 16 14 19 19 C 1.44418 * 107.00171 * 26.48516 * 18 17 16 20 20 C 1.46892 * 111.00032 * 199.60077 * 10 9 7 21 21 C 1.53001 * 109.47270 * 75.36929 * 20 10 9 22 22 C 1.53004 * 117.49677 * 243.48012 * 21 20 10 23 23 C 1.52998 * 117.49877 * 174.81899 * 21 20 10 24 24 H 0.96997 * 119.99514 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46535 * 295.08620 * 9 7 2 26 26 H 1.09000 * 109.47123 * 55.08137 * 9 7 2 27 27 H 1.08993 * 109.47459 * 310.00143 * 11 10 9 28 28 H 1.08997 * 109.46948 * 70.00503 * 11 10 9 29 29 H 1.09003 * 109.46923 * 300.00322 * 12 11 10 30 30 H 1.09006 * 109.47050 * 60.00198 * 12 11 10 31 31 H 1.09003 * 109.47053 * 299.99759 * 13 12 11 32 32 H 1.08997 * 109.47291 * 60.00151 * 13 12 11 33 33 H 1.08998 * 110.48532 * 339.60113 * 16 14 13 34 34 H 1.09001 * 110.48765 * 102.24597 * 16 14 13 35 35 H 1.08998 * 109.88038 * 117.39490 * 17 16 14 36 36 H 1.09004 * 109.88409 * 238.39421 * 17 16 14 37 37 H 1.09000 * 110.65473 * 201.48048 * 19 18 17 38 38 H 1.09000 * 110.59892 * 78.47499 * 19 18 17 39 39 H 1.09002 * 109.47220 * 195.36400 * 20 10 9 40 40 H 1.09005 * 109.47568 * 315.36752 * 20 10 9 41 41 H 1.08999 * 115.54715 * 29.14633 * 21 20 10 42 42 H 1.08999 * 117.49727 * 359.97438 * 22 21 20 43 43 H 1.08995 * 117.49580 * 145.02102 * 22 21 20 44 44 H 1.09006 * 117.49684 * 214.97800 * 23 21 20 45 45 H 1.08990 * 117.50204 * 359.97159 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5468 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2012 -3.6132 -0.1175 11 6 2.8979 -3.8479 1.1543 12 6 4.0451 -4.8358 0.9327 13 6 4.7702 -5.0807 2.2574 14 6 5.9170 -6.0690 2.0360 15 1 5.5546 -6.9838 1.5669 16 6 6.6425 -6.3810 3.3676 17 6 8.1357 -6.4044 2.9877 18 8 8.2197 -6.1787 1.5706 19 6 7.0470 -5.4253 1.1928 20 6 1.5272 -4.8331 -0.5815 21 6 1.2348 -4.7163 -2.0787 22 6 -0.2320 -4.7118 -2.5139 23 6 0.6421 -5.9399 -2.7804 24 1 -0.4849 0.8401 -0.0004 25 1 0.6918 -2.5957 0.9311 26 1 0.5603 -2.5199 -0.8424 27 1 3.2973 -2.9056 1.5292 28 1 2.1983 -4.2607 1.8810 29 1 3.6456 -5.7782 0.5579 30 1 4.7448 -4.4229 0.2060 31 1 5.1696 -4.1384 2.6327 32 1 4.0704 -5.4937 2.9839 33 1 6.4475 -5.5983 4.1007 34 1 6.3316 -7.3520 3.7530 35 1 8.6662 -5.6155 3.5208 36 1 8.5665 -7.3742 3.2370 37 1 6.8437 -5.5388 0.1279 38 1 7.1673 -4.3733 1.4515 39 1 2.1712 -5.6943 -0.4032 40 1 0.5912 -4.9605 -0.0374 41 1 1.9302 -4.0981 -2.6466 42 1 -0.9887 -4.7925 -1.7335 43 1 -0.5016 -4.0910 -3.3683 44 1 0.9472 -6.1265 -3.8101 45 1 0.4608 -6.8282 -2.1755 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592071771.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:23 Heat of formation + Delta-G solvation = -55.233669 kcal Electronic energy + Delta-G solvation = -20650.578861 eV Core-core repulsion = 17667.313164 eV Total energy + Delta-G solvation = -2983.265697 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.42317 -39.36018 -37.26864 -35.60017 -34.48313 -32.05845 -30.03593 -29.43293 -27.25966 -25.74197 -23.92757 -23.16496 -22.83615 -21.83830 -21.22303 -20.96484 -18.51232 -17.45941 -17.03344 -16.81223 -16.46583 -16.30953 -15.83100 -15.56122 -15.28837 -14.91173 -14.50707 -14.25678 -13.93782 -13.74198 -13.49564 -13.16761 -12.92914 -12.70446 -12.58906 -12.53070 -12.37034 -12.34776 -12.20313 -12.00242 -11.69710 -11.55584 -11.41399 -11.34309 -11.25707 -11.03593 -10.61578 -10.61012 -10.54300 -8.97235 -8.17254 -6.26757 1.40504 1.41871 1.52628 2.41073 2.93661 3.02615 3.14152 3.30298 3.64651 3.81522 3.92469 4.01193 4.05617 4.16228 4.21304 4.30296 4.34354 4.38444 4.52038 4.56364 4.64616 4.73718 4.79387 4.82660 4.84286 4.86330 4.90420 4.93259 4.98244 5.03156 5.05537 5.13163 5.22230 5.24682 5.28620 5.34623 5.43632 5.47920 5.50306 5.69850 5.94997 6.12358 6.46110 6.70182 6.89390 7.42433 8.93182 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.012781 B = 0.004843 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.170107 B = 5780.336459 C = 7443.128864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.002 3.998 3 Si 0.965 3.035 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.517 4.517 8 H 0.059 0.941 9 C 0.211 3.789 10 N -0.540 5.540 11 C 0.064 3.936 12 C -0.103 4.103 13 C -0.100 4.100 14 C -0.113 4.113 15 H 0.089 0.911 16 C -0.149 4.149 17 C 0.040 3.960 18 O -0.406 6.406 19 C 0.046 3.954 20 C 0.086 3.914 21 C -0.153 4.153 22 C -0.196 4.196 23 C -0.149 4.149 24 H 0.263 0.737 25 H -0.047 1.047 26 H 0.011 0.989 27 H 0.055 0.945 28 H 0.015 0.985 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.061 0.939 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.059 0.941 39 H 0.093 0.907 40 H 0.012 0.988 41 H 0.091 0.909 42 H 0.081 0.919 43 H 0.087 0.913 44 H 0.109 0.891 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.154 -14.910 3.630 18.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.196 4.196 3 Si 0.790 3.210 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.189 1.189 7 C -0.556 4.556 8 H 0.078 0.922 9 C 0.085 3.915 10 N -0.264 5.264 11 C -0.064 4.064 12 C -0.141 4.141 13 C -0.138 4.138 14 C -0.131 4.131 15 H 0.107 0.893 16 C -0.187 4.187 17 C -0.037 4.037 18 O -0.326 6.326 19 C -0.030 4.030 20 C -0.042 4.042 21 C -0.172 4.172 22 C -0.233 4.233 23 C -0.186 4.186 24 H 0.072 0.928 25 H -0.029 1.029 26 H 0.029 0.971 27 H 0.074 0.926 28 H 0.033 0.967 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.109 0.891 35 H 0.079 0.921 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.077 0.923 39 H 0.111 0.889 40 H 0.030 0.970 41 H 0.110 0.890 42 H 0.099 0.901 43 H 0.105 0.895 44 H 0.127 0.873 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 10.530 -14.733 3.160 18.383 hybrid contribution -0.964 1.234 0.714 1.721 sum 9.566 -13.499 3.874 16.993 Atomic orbital electron populations 1.70091 1.07659 1.27670 1.52163 1.25866 0.95682 1.02976 0.95045 0.85450 0.78602 0.78597 0.78375 1.19997 1.20825 1.18900 1.21472 0.93480 0.91215 1.49388 0.92241 1.19354 0.90249 0.88981 0.92951 1.62034 1.30105 1.05008 1.29256 1.22007 0.95554 0.99098 0.89730 1.21557 0.96257 0.98318 0.97920 1.21453 0.96488 0.98763 0.97101 1.22675 0.95147 0.99242 0.96082 0.89286 1.23013 0.94241 1.03852 0.97594 1.23315 0.96854 1.02176 0.81332 1.88828 1.44386 1.75194 1.24197 1.23747 0.83640 0.95194 1.00451 1.21704 0.96337 0.93187 0.92946 1.22201 0.96326 1.02689 0.95965 1.22995 0.94007 1.02997 1.03292 1.23032 1.01976 0.91641 1.01950 0.92849 1.02929 0.97075 0.92633 0.96661 0.91208 0.91843 0.91978 0.90997 0.89975 0.89119 0.92093 0.88738 0.88813 0.92283 0.88915 0.96965 0.89031 0.90079 0.89455 0.87269 0.87521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.99 13.29 21.45 0.28 -56.71 16 2 C 0.00 0.11 5.46 84.65 0.46 0.57 16 3 Si 0.96 44.88 29.54 68.60 2.03 46.90 16 4 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 6 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.52 -29.72 8.61 25.60 0.22 -29.49 16 8 H 0.06 3.37 7.65 -2.91 -0.02 3.34 16 9 C 0.21 11.39 4.57 85.56 0.39 11.78 16 10 N -0.54 -23.20 4.36 -900.82 -3.93 -27.12 16 11 C 0.06 2.38 4.78 86.30 0.41 2.79 16 12 C -0.10 -2.79 5.06 30.59 0.15 -2.64 16 13 C -0.10 -2.17 4.61 30.59 0.14 -2.03 16 14 C -0.11 -2.13 3.12 -9.49 -0.03 -2.16 16 15 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 16 C -0.15 -2.33 6.60 31.58 0.21 -2.13 16 17 C 0.04 0.69 7.70 72.35 0.56 1.24 16 18 O -0.41 -9.72 11.52 -148.98 -1.72 -11.44 16 19 C 0.05 1.00 6.49 72.67 0.47 1.47 16 20 C 0.09 3.08 5.11 86.31 0.44 3.52 16 21 C -0.15 -5.23 5.14 -10.79 -0.06 -5.29 16 22 C -0.20 -6.34 10.09 30.62 0.31 -6.03 16 23 C -0.15 -3.78 10.25 30.62 0.31 -3.47 16 24 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 25 H -0.05 -2.77 8.00 -2.39 -0.02 -2.79 16 26 H 0.01 0.65 7.21 -2.39 -0.02 0.63 16 27 H 0.06 2.31 7.31 -2.39 -0.02 2.29 16 28 H 0.02 0.56 8.12 -2.39 -0.02 0.54 16 29 H 0.07 1.73 6.25 -2.39 -0.01 1.71 16 30 H 0.06 1.82 7.59 -2.38 -0.02 1.80 16 31 H 0.06 1.42 8.05 -2.39 -0.02 1.40 16 32 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.08 1.21 7.86 -2.39 -0.02 1.19 16 34 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 37 H 0.09 2.01 8.11 -2.39 -0.02 1.99 16 38 H 0.06 1.32 7.98 -2.39 -0.02 1.30 16 39 H 0.09 2.75 5.88 -2.39 -0.01 2.74 16 40 H 0.01 0.46 7.74 -2.38 -0.02 0.44 16 41 H 0.09 3.48 8.14 -2.39 -0.02 3.46 16 42 H 0.08 2.72 8.03 -2.39 -0.02 2.70 16 43 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 44 H 0.11 2.36 8.14 -2.38 -0.02 2.34 16 45 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -65.80 354.98 1.59 -64.21 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: 0.92 Total: 16.01 kcal Atomic # 6 Polarization: -35.86 SS G_CDS: 4.00 Total: -31.86 kcal Atomic # 7 Polarization: -80.19 SS G_CDS: -3.64 Total: -83.83 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: -1.72 Total: -11.44 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Total: -65.80 1.59 -64.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592071771.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.979 kcal (2) G-P(sol) polarization free energy of solvation -65.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds