Wall clock time and date at job start Mon Mar 30 2020 07:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00204 * 2 1 4 4 H 1.48497 * 109.46897 * 240.00096 * 3 2 1 5 5 H 1.48500 * 109.47149 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46785 * 120.00365 * 3 2 1 7 7 C 1.37878 * 119.99494 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99679 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00274 * 0.02562 * 7 2 1 10 10 O 1.42904 * 109.47025 * 179.97438 * 9 7 2 11 11 C 1.42893 * 113.99846 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47123 * 180.02562 * 11 10 9 13 13 N 1.46900 * 109.47410 * 65.00125 * 12 11 10 14 14 C 1.46850 * 110.99565 * 66.04830 * 13 12 11 15 15 C 1.53034 * 109.51241 * 174.16989 * 14 13 12 16 16 C 1.53102 * 109.29495 * 59.17931 * 15 14 13 17 17 C 1.53111 * 109.15487 * 302.34459 * 16 15 14 18 18 C 1.46848 * 110.99828 * 301.83732 * 13 12 11 19 19 H 1.09004 * 109.45781 * 65.82346 * 18 13 12 20 20 C 1.52994 * 109.46264 * 305.84532 * 18 13 12 21 21 C 1.53786 * 113.60848 * 280.05091 * 20 18 13 22 22 C 1.53958 * 87.01691 * 220.05100 * 21 20 18 23 23 C 1.53781 * 87.11427 * 25.36537 * 22 21 20 24 24 H 0.97002 * 119.99998 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47015 * 59.99845 * 9 7 2 26 26 H 1.08997 * 109.47210 * 299.99536 * 9 7 2 27 27 H 1.09001 * 109.47126 * 60.00622 * 11 10 9 28 28 H 1.09003 * 109.47771 * 300.00421 * 11 10 9 29 29 H 1.08998 * 109.47315 * 305.00090 * 12 11 10 30 30 H 1.09008 * 109.47324 * 185.00240 * 12 11 10 31 31 H 1.08998 * 109.45933 * 294.17425 * 14 13 12 32 32 H 1.08997 * 109.46932 * 54.15631 * 14 13 12 33 33 H 1.09001 * 109.50760 * 179.10960 * 15 14 13 34 34 H 1.09006 * 109.50392 * 299.22845 * 15 14 13 35 35 H 1.08993 * 109.52975 * 182.43556 * 16 15 14 36 36 H 1.09003 * 109.56958 * 62.27171 * 16 15 14 37 37 H 1.08999 * 109.50453 * 297.70799 * 17 16 15 38 38 H 1.09001 * 109.53862 * 177.61366 * 17 16 15 39 39 H 1.08993 * 112.85320 * 51.24427 * 20 18 13 40 40 H 1.08993 * 113.61955 * 334.56790 * 21 20 18 41 41 H 1.09002 * 113.61420 * 105.47575 * 21 20 18 42 42 H 1.09008 * 113.54001 * 270.81091 * 22 21 20 43 43 H 1.09005 * 113.74506 * 139.94520 * 22 21 20 44 44 H 1.08994 * 113.61380 * 220.09288 * 23 22 21 45 45 H 1.09000 * 113.69237 * 89.19530 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 8 2.1795 -3.5854 -0.0027 11 6 1.5649 -4.8754 -0.0032 12 6 2.6478 -5.9562 -0.0036 13 7 3.4078 -5.8885 1.2517 14 6 2.5617 -6.2420 2.3987 15 6 3.4177 -6.3023 3.6659 16 6 4.0779 -4.9402 3.8956 17 6 4.9142 -4.5736 2.6666 18 6 4.0151 -4.5632 1.4282 19 1 3.2299 -3.8180 1.5558 20 6 4.8509 -4.2170 0.1944 21 6 6.2381 -4.8809 0.1840 22 6 6.7810 -3.5522 -0.3728 23 6 5.5814 -2.8681 0.3038 24 1 -0.4850 0.8401 -0.0004 25 1 0.6245 -2.5563 -0.8919 26 1 0.6239 -2.5575 0.8880 27 1 0.9445 -4.9819 -0.8931 28 1 0.9449 -4.9830 0.8868 29 1 3.3214 -5.7954 -0.8453 30 1 2.1817 -6.9375 -0.0937 31 1 1.7835 -5.4889 2.5217 32 1 2.1016 -7.2147 2.2247 33 1 2.7869 -6.5492 4.5198 34 1 4.1877 -7.0649 3.5490 35 1 4.7227 -4.9911 4.7729 36 1 3.3091 -4.1835 4.0519 37 1 5.7078 -5.3089 2.5339 38 1 5.3532 -3.5856 2.8058 39 1 4.3005 -4.3411 -0.7382 40 1 6.6135 -5.1235 1.1781 41 1 6.3184 -5.7136 -0.5148 42 1 6.7594 -3.4951 -1.4612 43 1 7.7437 -3.2609 0.0473 44 1 5.1324 -2.0784 -0.2984 45 1 5.7756 -2.5588 1.3308 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592199569.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:14 Heat of formation + Delta-G solvation = -30.158629 kcal Electronic energy + Delta-G solvation = -22526.379213 eV Core-core repulsion = 19544.200852 eV Total energy + Delta-G solvation = -2982.178361 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.97864 -37.35958 -36.33589 -33.57821 -32.53483 -30.54398 -28.60455 -26.82927 -25.32096 -25.02508 -23.79821 -22.46223 -21.82298 -20.87102 -19.60639 -17.88107 -16.43492 -16.01959 -15.72344 -15.25620 -14.96869 -14.47939 -14.34588 -14.17858 -13.71598 -13.29707 -13.24872 -12.80970 -12.50873 -12.12185 -11.98097 -11.76222 -11.49106 -11.37591 -11.13659 -10.96394 -10.84784 -10.76239 -10.68043 -10.39877 -10.35108 -10.14492 -10.08343 -9.65070 -9.51432 -9.45251 -9.09819 -8.77544 -8.19658 -7.60262 -6.11823 -4.13209 3.30147 3.33483 3.36654 4.24441 4.35062 4.89425 5.03050 5.12015 5.13970 5.21112 5.24959 5.27274 5.35742 5.50879 5.59463 5.65137 5.72626 5.75656 5.79965 5.93913 5.98858 6.03406 6.07753 6.13250 6.16207 6.20156 6.27664 6.31683 6.36169 6.37358 6.45449 6.50623 6.58839 6.70158 6.75336 7.02659 7.10917 7.12975 7.40846 7.54934 7.63281 7.79255 8.14299 8.54472 9.00057 9.51619 10.99768 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.017010 B = 0.006867 C = 0.006035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.738098 B = 4076.224441 C = 4638.349498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.057 3.943 3 Si 0.903 3.097 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.509 4.509 8 H 0.068 0.932 9 C 0.193 3.807 10 O -0.378 6.378 11 C 0.022 3.978 12 C 0.056 3.944 13 N -0.527 5.527 14 C 0.051 3.949 15 C -0.112 4.112 16 C -0.122 4.122 17 C -0.116 4.116 18 C 0.088 3.912 19 H 0.090 0.910 20 C -0.077 4.077 21 C -0.139 4.139 22 C -0.146 4.146 23 C -0.133 4.133 24 H 0.264 0.736 25 H 0.001 0.999 26 H 0.000 1.000 27 H 0.037 0.963 28 H 0.035 0.965 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.035 0.965 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.065 0.935 35 H 0.055 0.945 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.095 0.905 40 H 0.081 0.919 41 H 0.055 0.945 42 H 0.072 0.928 43 H 0.056 0.944 44 H 0.071 0.929 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.511 -11.725 3.792 14.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.145 4.145 3 Si 0.731 3.269 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.548 4.548 8 H 0.086 0.914 9 C 0.118 3.882 10 O -0.298 6.298 11 C -0.057 4.057 12 C -0.072 4.072 13 N -0.251 5.251 14 C -0.077 4.077 15 C -0.150 4.150 16 C -0.160 4.160 17 C -0.154 4.154 18 C -0.019 4.019 19 H 0.107 0.893 20 C -0.095 4.095 21 C -0.176 4.176 22 C -0.184 4.184 23 C -0.171 4.171 24 H 0.073 0.927 25 H 0.019 0.981 26 H 0.018 0.982 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.053 0.947 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.113 0.887 40 H 0.099 0.901 41 H 0.074 0.926 42 H 0.091 0.909 43 H 0.075 0.925 44 H 0.090 0.910 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.932 -11.916 3.773 15.362 hybrid contribution -0.835 1.502 -0.002 1.719 sum 8.096 -10.414 3.770 13.719 Atomic orbital electron populations 1.69954 1.06117 1.27164 1.50632 1.24936 0.94903 0.99343 0.95270 0.86469 0.79391 0.82231 0.78859 1.20011 1.21237 1.20006 1.21009 0.93999 0.89155 1.50599 0.91361 1.20166 0.88930 0.84015 0.95046 1.88024 1.34498 1.12699 1.94547 1.23012 0.96324 0.87091 0.99255 1.22300 0.94737 0.96538 0.93658 1.62157 1.31902 1.29767 1.01296 1.22070 0.94708 0.99847 0.91087 1.21526 0.99181 0.97774 0.96474 1.21583 0.99397 0.97146 0.97882 1.21823 0.98295 1.01095 0.94176 1.21809 0.96837 0.89661 0.93581 0.89276 1.22353 0.93378 0.95084 0.98728 1.23111 0.97692 0.96018 1.00783 1.22860 0.97751 0.97813 0.99959 1.22909 0.95894 0.97603 1.00646 0.92684 0.98084 0.98208 0.94472 0.94684 0.89861 0.90690 0.94650 0.91615 0.92302 0.91644 0.92584 0.92180 0.91545 0.91781 0.88710 0.90093 0.92648 0.90940 0.92522 0.91022 0.90667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.74 13.29 55.43 0.74 -26.01 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.66 29.54 -169.99 -5.02 16.63 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.51 -14.41 9.43 -34.44 -0.32 -14.73 16 8 H 0.07 1.89 7.25 -52.48 -0.38 1.51 16 9 C 0.19 5.11 5.69 36.01 0.20 5.32 16 10 O -0.38 -8.38 5.38 -35.23 -0.19 -8.57 16 11 C 0.02 0.41 5.76 37.16 0.21 0.62 16 12 C 0.06 0.84 5.52 -3.82 -0.02 0.82 16 13 N -0.53 -7.95 4.69 -226.69 -1.06 -9.01 16 14 C 0.05 0.71 5.06 -3.83 -0.02 0.69 16 15 C -0.11 -1.39 6.09 -26.66 -0.16 -1.55 16 16 C -0.12 -1.64 6.00 -26.62 -0.16 -1.80 16 17 C -0.12 -1.68 4.50 -26.65 -0.12 -1.80 16 18 C 0.09 1.45 1.30 -67.72 -0.09 1.37 16 19 H 0.09 1.84 5.58 -51.93 -0.29 1.55 16 20 C -0.08 -1.25 2.43 -89.80 -0.22 -1.47 16 21 C -0.14 -1.93 7.37 -25.82 -0.19 -2.12 16 22 C -0.15 -2.04 8.09 -25.83 -0.21 -2.24 16 23 C -0.13 -2.19 7.46 -25.92 -0.19 -2.38 16 24 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 25 H 0.00 0.04 8.14 -51.93 -0.42 -0.39 16 26 H 0.00 0.00 8.14 -51.93 -0.42 -0.42 16 27 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.04 0.64 6.46 -51.93 -0.34 0.31 16 29 H 0.08 1.28 6.16 -51.93 -0.32 0.96 16 30 H 0.07 0.96 8.06 -51.92 -0.42 0.54 16 31 H 0.04 0.56 6.65 -51.93 -0.35 0.22 16 32 H 0.07 0.82 8.06 -51.93 -0.42 0.40 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.07 0.91 5.99 -51.93 -0.31 0.60 16 38 H 0.06 0.94 6.38 -51.93 -0.33 0.61 16 39 H 0.09 1.72 5.43 -51.93 -0.28 1.43 16 40 H 0.08 1.08 5.50 -51.93 -0.29 0.79 16 41 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.07 0.99 8.14 -51.92 -0.42 0.57 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.07 1.35 7.58 -51.93 -0.39 0.95 16 45 H 0.07 1.21 6.26 -51.93 -0.33 0.88 16 LS Contribution 329.46 15.07 4.96 4.96 Total: -1.00 -28.80 329.46 -9.76 -38.56 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -7.80 Total: 1.20 kcal Atomic # 6 Polarization: -16.38 SS G_CDS: -1.39 Total: -17.77 kcal Atomic # 7 Polarization: -34.69 SS G_CDS: -0.33 Total: -35.02 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: -0.19 Total: -8.57 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.80 -9.76 -38.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592199569.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.400 kcal (2) G-P(sol) polarization free energy of solvation -28.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds