Wall clock time and date at job start Mon Mar 30 2020 07:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00204 * 2 1 4 4 H 1.48497 * 109.46897 * 240.00096 * 3 2 1 5 5 H 1.48500 * 109.47149 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46785 * 120.00365 * 3 2 1 7 7 C 1.37878 * 119.99494 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99679 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00274 * 0.02562 * 7 2 1 10 10 O 1.42904 * 109.47025 * 179.97438 * 9 7 2 11 11 C 1.42893 * 113.99846 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47123 * 180.02562 * 11 10 9 13 13 N 1.46900 * 109.47410 * 65.00125 * 12 11 10 14 14 C 1.46850 * 110.99565 * 66.04830 * 13 12 11 15 15 C 1.53034 * 109.51241 * 174.16989 * 14 13 12 16 16 C 1.53102 * 109.29495 * 59.17931 * 15 14 13 17 17 C 1.53111 * 109.15487 * 302.34459 * 16 15 14 18 18 C 1.46848 * 110.99828 * 301.83732 * 13 12 11 19 19 H 1.09004 * 109.45781 * 65.82346 * 18 13 12 20 20 C 1.52994 * 109.46264 * 305.84532 * 18 13 12 21 21 C 1.53786 * 113.60848 * 280.05091 * 20 18 13 22 22 C 1.53958 * 87.01691 * 220.05100 * 21 20 18 23 23 C 1.53781 * 87.11427 * 25.36537 * 22 21 20 24 24 H 0.97002 * 119.99998 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47015 * 59.99845 * 9 7 2 26 26 H 1.08997 * 109.47210 * 299.99536 * 9 7 2 27 27 H 1.09001 * 109.47126 * 60.00622 * 11 10 9 28 28 H 1.09003 * 109.47771 * 300.00421 * 11 10 9 29 29 H 1.08998 * 109.47315 * 305.00090 * 12 11 10 30 30 H 1.09008 * 109.47324 * 185.00240 * 12 11 10 31 31 H 1.08998 * 109.45933 * 294.17425 * 14 13 12 32 32 H 1.08997 * 109.46932 * 54.15631 * 14 13 12 33 33 H 1.09001 * 109.50760 * 179.10960 * 15 14 13 34 34 H 1.09006 * 109.50392 * 299.22845 * 15 14 13 35 35 H 1.08993 * 109.52975 * 182.43556 * 16 15 14 36 36 H 1.09003 * 109.56958 * 62.27171 * 16 15 14 37 37 H 1.08999 * 109.50453 * 297.70799 * 17 16 15 38 38 H 1.09001 * 109.53862 * 177.61366 * 17 16 15 39 39 H 1.08993 * 112.85320 * 51.24427 * 20 18 13 40 40 H 1.08993 * 113.61955 * 334.56790 * 21 20 18 41 41 H 1.09002 * 113.61420 * 105.47575 * 21 20 18 42 42 H 1.09008 * 113.54001 * 270.81091 * 22 21 20 43 43 H 1.09005 * 113.74506 * 139.94520 * 22 21 20 44 44 H 1.08994 * 113.61380 * 220.09288 * 23 22 21 45 45 H 1.09000 * 113.69237 * 89.19530 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 8 2.1795 -3.5854 -0.0027 11 6 1.5649 -4.8754 -0.0032 12 6 2.6478 -5.9562 -0.0036 13 7 3.4078 -5.8885 1.2517 14 6 2.5617 -6.2420 2.3987 15 6 3.4177 -6.3023 3.6659 16 6 4.0779 -4.9402 3.8956 17 6 4.9142 -4.5736 2.6666 18 6 4.0151 -4.5632 1.4282 19 1 3.2299 -3.8180 1.5558 20 6 4.8509 -4.2170 0.1944 21 6 6.2381 -4.8809 0.1840 22 6 6.7810 -3.5522 -0.3728 23 6 5.5814 -2.8681 0.3038 24 1 -0.4850 0.8401 -0.0004 25 1 0.6245 -2.5563 -0.8919 26 1 0.6239 -2.5575 0.8880 27 1 0.9445 -4.9819 -0.8931 28 1 0.9449 -4.9830 0.8868 29 1 3.3214 -5.7954 -0.8453 30 1 2.1817 -6.9375 -0.0937 31 1 1.7835 -5.4889 2.5217 32 1 2.1016 -7.2147 2.2247 33 1 2.7869 -6.5492 4.5198 34 1 4.1877 -7.0649 3.5490 35 1 4.7227 -4.9911 4.7729 36 1 3.3091 -4.1835 4.0519 37 1 5.7078 -5.3089 2.5339 38 1 5.3532 -3.5856 2.8058 39 1 4.3005 -4.3411 -0.7382 40 1 6.6135 -5.1235 1.1781 41 1 6.3184 -5.7136 -0.5148 42 1 6.7594 -3.4951 -1.4612 43 1 7.7437 -3.2609 0.0473 44 1 5.1324 -2.0784 -0.2984 45 1 5.7756 -2.5588 1.3308 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592199569.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:14 Heat of formation + Delta-G solvation = -46.676494 kcal Electronic energy + Delta-G solvation = -22527.095482 eV Core-core repulsion = 19544.200852 eV Total energy + Delta-G solvation = -2982.894630 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.25233 -38.78143 -37.85258 -35.17963 -34.40187 -31.71306 -30.23866 -28.71982 -26.55620 -26.25123 -25.08395 -24.52046 -23.18126 -22.06715 -20.81559 -19.20989 -18.54483 -17.49900 -17.34842 -16.66932 -16.54671 -16.02780 -15.71161 -15.49583 -15.32563 -14.62074 -14.42988 -14.38940 -13.92337 -13.55861 -13.38215 -13.18772 -13.04529 -12.82546 -12.77533 -12.64331 -12.37460 -12.28631 -12.10436 -11.91355 -11.60263 -11.52660 -11.30063 -11.20114 -10.94161 -10.86345 -10.69923 -10.65551 -10.10496 -8.98199 -8.32722 -6.43381 1.35906 1.39950 1.48041 2.31454 2.97926 3.01508 3.28912 3.85357 3.94400 3.99257 4.02811 4.12643 4.20545 4.22515 4.30188 4.30499 4.47284 4.51151 4.59704 4.65591 4.72178 4.82456 4.83495 4.95388 4.96599 5.02792 5.07374 5.07633 5.14268 5.17328 5.19392 5.20807 5.24234 5.30662 5.34849 5.42467 5.55900 5.58454 5.73352 5.85565 5.97216 6.28763 6.34975 6.54045 6.82315 7.27919 8.79687 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.017010 B = 0.006867 C = 0.006035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.738098 B = 4076.224441 C = 4638.349498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.006 3.994 3 Si 0.974 3.026 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.531 4.531 8 H 0.067 0.933 9 C 0.211 3.789 10 O -0.375 6.375 11 C 0.015 3.985 12 C 0.063 3.937 13 N -0.518 5.518 14 C 0.047 3.953 15 C -0.106 4.106 16 C -0.123 4.123 17 C -0.112 4.112 18 C 0.093 3.907 19 H 0.040 0.960 20 C -0.083 4.083 21 C -0.121 4.121 22 C -0.134 4.134 23 C -0.143 4.143 24 H 0.268 0.732 25 H -0.024 1.024 26 H -0.028 1.028 27 H 0.039 0.961 28 H 0.030 0.970 29 H 0.083 0.917 30 H 0.108 0.892 31 H 0.007 0.993 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.034 0.966 37 H 0.084 0.916 38 H 0.057 0.943 39 H 0.072 0.928 40 H 0.093 0.907 41 H 0.065 0.935 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.037 0.963 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.711 -12.973 4.396 17.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.193 4.193 3 Si 0.797 3.203 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.190 1.190 7 C -0.569 4.569 8 H 0.085 0.915 9 C 0.135 3.865 10 O -0.295 6.295 11 C -0.063 4.063 12 C -0.065 4.065 13 N -0.241 5.241 14 C -0.081 4.081 15 C -0.143 4.143 16 C -0.161 4.161 17 C -0.149 4.149 18 C -0.015 4.015 19 H 0.058 0.942 20 C -0.102 4.102 21 C -0.158 4.158 22 C -0.172 4.172 23 C -0.181 4.181 24 H 0.077 0.923 25 H -0.006 1.006 26 H -0.010 1.010 27 H 0.057 0.943 28 H 0.048 0.952 29 H 0.101 0.899 30 H 0.126 0.874 31 H 0.025 0.975 32 H 0.106 0.894 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.053 0.947 37 H 0.102 0.898 38 H 0.076 0.924 39 H 0.090 0.910 40 H 0.111 0.889 41 H 0.084 0.916 42 H 0.092 0.908 43 H 0.095 0.905 44 H 0.056 0.944 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 11.137 -13.189 4.378 17.809 hybrid contribution -1.591 1.827 -0.187 2.430 sum 9.546 -11.362 4.191 15.420 Atomic orbital electron populations 1.70075 1.07789 1.28430 1.51090 1.25905 0.95814 1.03219 0.94314 0.85367 0.78220 0.77310 0.79408 1.18994 1.20243 1.19023 1.21312 0.94124 0.90304 1.51155 0.91490 1.19710 0.88768 0.85540 0.92436 1.88066 1.33504 1.13411 1.94495 1.23317 0.97825 0.86136 0.99070 1.22368 0.93730 0.96513 0.93898 1.62235 1.31833 1.28404 1.01668 1.22199 0.94343 0.99949 0.91578 1.21515 0.99437 0.97320 0.96055 1.21599 0.99053 0.97165 0.98285 1.21784 0.98324 1.01338 0.93500 1.21627 0.95995 0.88998 0.94834 0.94225 1.22312 0.94642 0.95681 0.97565 1.23008 0.95049 0.96085 1.01689 1.22808 0.97384 0.97017 0.99945 1.22948 0.97680 0.96918 1.00536 0.92291 1.00601 1.00981 0.94266 0.95183 0.89914 0.87408 0.97474 0.89393 0.90624 0.90144 0.90308 0.94660 0.89785 0.92426 0.91000 0.88862 0.91575 0.90781 0.90514 0.94423 0.90484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.09 13.29 21.45 0.28 -56.80 16 2 C 0.01 0.32 5.46 84.66 0.46 0.78 16 3 Si 0.97 44.94 29.54 68.60 2.03 46.97 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.53 -31.35 9.43 25.60 0.24 -31.10 16 8 H 0.07 3.88 7.25 -2.91 -0.02 3.86 16 9 C 0.21 11.89 5.69 71.24 0.41 12.29 16 10 O -0.38 -17.61 5.38 -148.98 -0.80 -18.41 16 11 C 0.02 0.57 5.76 71.98 0.41 0.99 16 12 C 0.06 1.85 5.52 86.30 0.48 2.32 16 13 N -0.52 -15.00 4.69 -871.11 -4.09 -19.09 16 14 C 0.05 1.26 5.06 86.32 0.44 1.69 16 15 C -0.11 -2.36 6.09 30.64 0.19 -2.18 16 16 C -0.12 -3.13 6.00 30.67 0.18 -2.95 16 17 C -0.11 -3.09 4.50 30.64 0.14 -2.95 16 18 C 0.09 3.08 1.30 44.94 0.06 3.14 16 19 H 0.04 1.73 5.58 -2.38 -0.01 1.72 16 20 C -0.08 -2.71 2.43 -10.27 -0.02 -2.73 16 21 C -0.12 -3.07 7.37 31.18 0.23 -2.84 16 22 C -0.13 -3.49 8.09 31.18 0.25 -3.24 16 23 C -0.14 -4.77 7.46 31.12 0.23 -4.54 16 24 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 25 H -0.02 -1.43 8.14 -2.39 -0.02 -1.45 16 26 H -0.03 -1.67 8.14 -2.39 -0.02 -1.69 16 27 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.03 1.16 6.46 -2.39 -0.02 1.14 16 29 H 0.08 2.47 6.16 -2.39 -0.01 2.45 16 30 H 0.11 2.49 8.06 -2.38 -0.02 2.47 16 31 H 0.01 0.23 6.65 -2.39 -0.02 0.21 16 32 H 0.09 1.95 8.06 -2.39 -0.02 1.93 16 33 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.08 1.61 8.14 -2.38 -0.02 1.60 16 35 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.08 2.04 5.99 -2.39 -0.01 2.02 16 38 H 0.06 1.65 6.38 -2.39 -0.02 1.63 16 39 H 0.07 2.65 5.43 -2.39 -0.01 2.64 16 40 H 0.09 2.16 5.50 -2.39 -0.01 2.15 16 41 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 43 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 44 H 0.04 1.48 7.58 -2.39 -0.02 1.46 16 45 H 0.08 2.50 6.26 -2.39 -0.01 2.48 16 Total: -1.00 -64.66 329.46 2.06 -62.60 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: 0.95 Total: 16.06 kcal Atomic # 6 Polarization: -35.01 SS G_CDS: 3.69 Total: -31.32 kcal Atomic # 7 Polarization: -72.09 SS G_CDS: -3.80 Total: -75.89 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: -0.80 Total: -18.41 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -64.66 2.06 -62.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592199569.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.923 kcal (2) G-P(sol) polarization free energy of solvation -64.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds