Wall clock time and date at job start Mon Mar 30 2020 07:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99902 * 2 1 4 4 H 1.48498 * 109.47296 * 269.99939 * 3 2 1 5 5 H 1.48501 * 109.46835 * 30.00060 * 3 2 1 6 6 H 1.48501 * 109.46847 * 149.99847 * 3 2 1 7 7 C 1.37875 * 119.99983 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00256 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99864 * 180.02562 * 7 2 1 10 10 O 1.42902 * 109.47393 * 179.97438 * 9 7 2 11 11 C 1.42896 * 114.00360 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47355 * 179.97438 * 11 10 9 13 13 N 1.46896 * 109.46814 * 65.00172 * 12 11 10 14 14 C 1.46841 * 111.00393 * 64.47223 * 13 12 11 15 15 C 1.53030 * 109.52972 * 185.83836 * 14 13 12 16 16 C 1.53120 * 109.27850 * 300.82339 * 15 14 13 17 17 C 1.53116 * 109.16100 * 57.65009 * 16 15 14 18 18 C 1.46854 * 110.99920 * 188.68354 * 13 12 11 19 19 H 1.08998 * 109.45626 * 294.17207 * 18 13 12 20 20 C 1.52999 * 109.46414 * 54.15334 * 18 13 12 21 21 C 1.53778 * 113.61437 * 271.56157 * 20 18 13 22 22 C 1.53953 * 87.01793 * 220.04881 * 21 20 18 23 23 C 1.53778 * 113.61291 * 173.95120 * 20 18 13 24 24 H 0.96998 * 120.00228 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47359 * 59.99956 * 9 7 2 26 26 H 1.09000 * 109.47237 * 300.00109 * 9 7 2 27 27 H 1.09000 * 109.47138 * 60.00132 * 11 10 9 28 28 H 1.08994 * 109.47302 * 300.00012 * 11 10 9 29 29 H 1.09003 * 109.47291 * 305.00131 * 12 11 10 30 30 H 1.09002 * 109.47356 * 185.00386 * 12 11 10 31 31 H 1.08997 * 109.46347 * 305.85632 * 14 13 12 32 32 H 1.09002 * 109.46489 * 65.82126 * 14 13 12 33 33 H 1.09006 * 109.50347 * 60.76097 * 15 14 13 34 34 H 1.09000 * 109.51038 * 180.83892 * 15 14 13 35 35 H 1.09004 * 109.52321 * 177.55706 * 16 15 14 36 36 H 1.08998 * 109.51800 * 297.67802 * 16 15 14 37 37 H 1.09001 * 109.50137 * 182.40778 * 17 16 15 38 38 H 1.08994 * 109.50672 * 62.29211 * 17 16 15 39 39 H 1.09001 * 112.84830 * 42.75748 * 20 18 13 40 40 H 1.08998 * 113.61266 * 334.56878 * 21 20 18 41 41 H 1.08999 * 113.61087 * 105.47049 * 21 20 18 42 42 H 1.09002 * 113.53344 * 270.80964 * 22 21 20 43 43 H 1.09003 * 113.73900 * 139.94944 * 22 21 20 44 44 H 1.08996 * 113.61569 * 254.52763 * 23 20 18 45 45 H 1.09003 * 113.61237 * 25.35361 * 23 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 0.0000 10 8 3.9879 -2.5413 -0.0001 11 6 5.4124 -2.6541 -0.0001 12 6 5.8070 -4.1323 0.0004 13 7 5.3677 -4.7568 -1.2546 14 6 6.0694 -4.1749 -2.4058 15 6 5.4854 -4.7428 -3.7013 16 6 5.6416 -6.2660 -3.7012 17 6 4.9433 -6.8427 -2.4666 18 6 5.5430 -6.2140 -1.2069 19 1 6.6058 -6.4503 -1.1538 20 6 4.8341 -6.7726 0.0285 21 6 5.7168 -6.7956 1.2875 22 6 5.0901 -8.1657 1.6041 23 6 4.8313 -8.3090 0.0951 24 1 -0.4850 0.8400 0.0004 25 1 3.8745 -0.6808 0.8905 26 1 3.8752 -0.6796 -0.8894 27 1 5.8152 -2.1706 0.8899 28 1 5.8152 -2.1705 -0.8900 29 1 5.3312 -4.6351 0.8424 30 1 6.8898 -4.2194 0.0900 31 1 5.9469 -3.0919 -2.3963 32 1 7.1297 -4.4208 -2.3470 33 1 4.4283 -4.4854 -3.7674 34 1 6.0165 -4.3220 -4.5551 35 1 5.1881 -6.6788 -4.6024 36 1 6.7005 -6.5235 -3.6755 37 1 5.0875 -7.9228 -2.4383 38 1 3.8777 -6.6185 -2.5133 39 1 3.8529 -6.3268 0.1913 40 1 6.7842 -6.8431 1.0716 41 1 5.4645 -6.0211 2.0118 42 1 4.1792 -8.1005 2.1991 43 1 5.8008 -8.8932 1.9964 44 1 3.8652 -8.7545 -0.1419 45 1 5.6554 -8.7710 -0.4486 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592199570.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:17 Heat of formation + Delta-G solvation = -32.837228 kcal Electronic energy + Delta-G solvation = -21505.893762 eV Core-core repulsion = 18523.599248 eV Total energy + Delta-G solvation = -2982.294514 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.08931 -37.61586 -36.60689 -33.69147 -32.47643 -31.03291 -29.07392 -27.29134 -25.93390 -25.47008 -23.72932 -21.90677 -21.70020 -20.88473 -19.58920 -19.25522 -16.78941 -16.55513 -15.72290 -15.39299 -14.97253 -14.62227 -14.35218 -14.17795 -14.15452 -13.71063 -13.17560 -12.94826 -12.62269 -12.56586 -12.41037 -12.23565 -11.94603 -11.83351 -11.34279 -11.04965 -10.95142 -10.87162 -10.72661 -10.59673 -10.55948 -10.45528 -10.36842 -9.87976 -9.79324 -9.72738 -9.09421 -8.75059 -8.36791 -7.96823 -6.05776 -4.03677 3.27962 3.34665 3.36469 3.99028 4.40302 4.54682 4.64935 4.70553 4.75402 4.80745 4.99001 5.03906 5.11474 5.25674 5.35576 5.39502 5.49804 5.55266 5.59725 5.61401 5.66518 5.70313 5.79144 5.83340 5.85992 5.92433 5.95161 5.98428 5.99638 6.03938 6.07060 6.22129 6.27593 6.32324 6.34463 6.49632 6.58667 6.68111 7.07409 7.37296 7.41797 7.67305 8.13623 8.76347 9.07895 9.54417 11.07492 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.019910 B = 0.004795 C = 0.004377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.973565 B = 5837.907940 C = 6394.816589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.071 3.929 3 Si 0.875 3.125 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.513 4.513 8 H 0.083 0.917 9 C 0.168 3.832 10 O -0.362 6.362 11 C 0.061 3.939 12 C 0.055 3.945 13 N -0.516 5.516 14 C 0.054 3.946 15 C -0.117 4.117 16 C -0.119 4.119 17 C -0.111 4.111 18 C 0.100 3.900 19 H 0.032 0.968 20 C -0.102 4.102 21 C -0.142 4.142 22 C -0.142 4.142 23 C -0.134 4.134 24 H 0.265 0.735 25 H -0.001 1.001 26 H -0.005 1.005 27 H 0.038 0.962 28 H 0.036 0.964 29 H 0.093 0.907 30 H 0.034 0.966 31 H 0.078 0.922 32 H 0.023 0.977 33 H 0.076 0.924 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.053 0.947 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.105 0.895 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.080 0.920 43 H 0.062 0.938 44 H 0.067 0.933 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.277 -14.642 -2.695 21.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.130 4.130 3 Si 0.702 3.298 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.551 4.551 8 H 0.101 0.899 9 C 0.092 3.908 10 O -0.281 6.281 11 C -0.017 4.017 12 C -0.073 4.073 13 N -0.241 5.241 14 C -0.073 4.073 15 C -0.155 4.155 16 C -0.157 4.157 17 C -0.148 4.148 18 C -0.008 4.008 19 H 0.050 0.950 20 C -0.121 4.121 21 C -0.179 4.179 22 C -0.180 4.180 23 C -0.171 4.171 24 H 0.075 0.925 25 H 0.016 0.984 26 H 0.013 0.987 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.111 0.889 30 H 0.052 0.948 31 H 0.097 0.903 32 H 0.041 0.959 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.123 0.877 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.099 0.901 43 H 0.081 0.919 44 H 0.085 0.915 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 14.487 -14.574 -2.751 20.732 hybrid contribution 1.490 1.158 0.070 1.888 sum 15.976 -13.416 -2.680 21.033 Atomic orbital electron populations 1.69877 1.06032 1.26936 1.50771 1.24761 0.94768 0.98647 0.94817 0.86869 0.80344 0.83932 0.78698 1.20006 1.20862 1.19198 1.20898 0.88334 0.95247 1.50590 0.89927 1.20569 0.96166 0.80096 0.93947 1.88012 1.16749 1.28499 1.94833 1.22382 0.85737 0.94969 0.98654 1.22298 0.96659 0.94946 0.93375 1.61807 1.57430 1.02788 1.02085 1.22115 0.94325 1.00098 0.90791 1.21577 1.02621 0.95048 0.96279 1.21571 0.99902 0.96100 0.98110 1.21597 1.01303 0.98683 0.93255 1.21588 0.96568 0.87801 0.94881 0.94997 1.22654 1.00623 0.95242 0.93584 1.23156 0.98992 0.97538 0.98250 1.22828 1.00992 0.97457 0.96676 1.22892 1.01708 0.96238 0.96308 0.92477 0.98364 0.98727 0.94424 0.94581 0.88908 0.94813 0.90337 0.95899 0.90530 0.92030 0.92073 0.92862 0.91886 0.90714 0.87681 0.90719 0.91056 0.90126 0.91916 0.91471 0.90540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.12 13.96 55.43 0.77 -27.35 16 2 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 3 Si 0.87 21.80 27.47 -169.99 -4.67 17.13 16 4 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 7 C -0.51 -15.57 9.99 -34.44 -0.34 -15.92 16 8 H 0.08 2.75 8.06 -52.49 -0.42 2.33 16 9 C 0.17 4.38 4.76 36.01 0.17 4.55 16 10 O -0.36 -8.67 10.27 -35.23 -0.36 -9.03 16 11 C 0.06 1.10 5.97 37.16 0.22 1.32 16 12 C 0.05 0.83 4.66 -3.83 -0.02 0.81 16 13 N -0.52 -7.81 4.45 -226.70 -1.01 -8.82 16 14 C 0.05 0.75 5.29 -3.84 -0.02 0.73 16 15 C -0.12 -1.47 6.09 -26.65 -0.16 -1.63 16 16 C -0.12 -1.30 6.00 -26.61 -0.16 -1.46 16 17 C -0.11 -1.28 5.07 -26.65 -0.14 -1.42 16 18 C 0.10 1.25 1.83 -67.72 -0.12 1.13 16 19 H 0.03 0.39 7.83 -51.93 -0.41 -0.01 16 20 C -0.10 -1.24 2.56 -89.81 -0.23 -1.47 16 21 C -0.14 -1.54 6.06 -25.83 -0.16 -1.70 16 22 C -0.14 -1.38 8.09 -25.83 -0.21 -1.59 16 23 C -0.13 -1.32 6.56 -25.92 -0.17 -1.49 16 24 H 0.27 7.70 8.31 -40.82 -0.34 7.36 16 25 H 0.00 -0.03 7.20 -51.93 -0.37 -0.41 16 26 H 0.00 -0.13 7.57 -51.93 -0.39 -0.52 16 27 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.04 0.63 6.17 -51.93 -0.32 0.31 16 29 H 0.09 1.42 4.61 -51.93 -0.24 1.18 16 30 H 0.03 0.44 8.13 -51.93 -0.42 0.02 16 31 H 0.08 1.18 6.07 -51.93 -0.32 0.87 16 32 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.63 7.12 -51.93 -0.37 0.26 16 38 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.11 1.56 8.14 -51.93 -0.42 1.13 16 40 H 0.07 0.76 7.88 -51.93 -0.41 0.35 16 41 H 0.07 0.83 7.00 -51.93 -0.36 0.46 16 42 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.08 0.69 7.80 -51.93 -0.41 0.29 16 LS Contribution 338.62 15.07 5.10 5.10 Total: -1.00 -31.78 338.62 -9.86 -41.63 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -8.26 Total: -2.57 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: -1.43 Total: -16.09 kcal Atomic # 7 Polarization: -35.94 SS G_CDS: -0.24 Total: -36.17 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: -0.36 Total: -9.03 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.67 Total: 17.13 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.78 -9.86 -41.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592199570.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.795 kcal (2) G-P(sol) polarization free energy of solvation -31.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds