Wall clock time and date at job start Mon Mar 30 2020 07:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99902 * 2 1 4 4 H 1.48498 * 109.47296 * 269.99939 * 3 2 1 5 5 H 1.48501 * 109.46835 * 30.00060 * 3 2 1 6 6 H 1.48501 * 109.46847 * 149.99847 * 3 2 1 7 7 C 1.37875 * 119.99983 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00256 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99864 * 180.02562 * 7 2 1 10 10 O 1.42902 * 109.47393 * 179.97438 * 9 7 2 11 11 C 1.42896 * 114.00360 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47355 * 179.97438 * 11 10 9 13 13 N 1.46896 * 109.46814 * 65.00172 * 12 11 10 14 14 C 1.46841 * 111.00393 * 64.47223 * 13 12 11 15 15 C 1.53030 * 109.52972 * 185.83836 * 14 13 12 16 16 C 1.53120 * 109.27850 * 300.82339 * 15 14 13 17 17 C 1.53116 * 109.16100 * 57.65009 * 16 15 14 18 18 C 1.46854 * 110.99920 * 188.68354 * 13 12 11 19 19 H 1.08998 * 109.45626 * 294.17207 * 18 13 12 20 20 C 1.52999 * 109.46414 * 54.15334 * 18 13 12 21 21 C 1.53778 * 113.61437 * 271.56157 * 20 18 13 22 22 C 1.53953 * 87.01793 * 220.04881 * 21 20 18 23 23 C 1.53778 * 113.61291 * 173.95120 * 20 18 13 24 24 H 0.96998 * 120.00228 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47359 * 59.99956 * 9 7 2 26 26 H 1.09000 * 109.47237 * 300.00109 * 9 7 2 27 27 H 1.09000 * 109.47138 * 60.00132 * 11 10 9 28 28 H 1.08994 * 109.47302 * 300.00012 * 11 10 9 29 29 H 1.09003 * 109.47291 * 305.00131 * 12 11 10 30 30 H 1.09002 * 109.47356 * 185.00386 * 12 11 10 31 31 H 1.08997 * 109.46347 * 305.85632 * 14 13 12 32 32 H 1.09002 * 109.46489 * 65.82126 * 14 13 12 33 33 H 1.09006 * 109.50347 * 60.76097 * 15 14 13 34 34 H 1.09000 * 109.51038 * 180.83892 * 15 14 13 35 35 H 1.09004 * 109.52321 * 177.55706 * 16 15 14 36 36 H 1.08998 * 109.51800 * 297.67802 * 16 15 14 37 37 H 1.09001 * 109.50137 * 182.40778 * 17 16 15 38 38 H 1.08994 * 109.50672 * 62.29211 * 17 16 15 39 39 H 1.09001 * 112.84830 * 42.75748 * 20 18 13 40 40 H 1.08998 * 113.61266 * 334.56878 * 21 20 18 41 41 H 1.08999 * 113.61087 * 105.47049 * 21 20 18 42 42 H 1.09002 * 113.53344 * 270.80964 * 22 21 20 43 43 H 1.09003 * 113.73900 * 139.94944 * 22 21 20 44 44 H 1.08996 * 113.61569 * 254.52763 * 23 20 18 45 45 H 1.09003 * 113.61237 * 25.35361 * 23 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 0.0000 10 8 3.9879 -2.5413 -0.0001 11 6 5.4124 -2.6541 -0.0001 12 6 5.8070 -4.1323 0.0004 13 7 5.3677 -4.7568 -1.2546 14 6 6.0694 -4.1749 -2.4058 15 6 5.4854 -4.7428 -3.7013 16 6 5.6416 -6.2660 -3.7012 17 6 4.9433 -6.8427 -2.4666 18 6 5.5430 -6.2140 -1.2069 19 1 6.6058 -6.4503 -1.1538 20 6 4.8341 -6.7726 0.0285 21 6 5.7168 -6.7956 1.2875 22 6 5.0901 -8.1657 1.6041 23 6 4.8313 -8.3090 0.0951 24 1 -0.4850 0.8400 0.0004 25 1 3.8745 -0.6808 0.8905 26 1 3.8752 -0.6796 -0.8894 27 1 5.8152 -2.1706 0.8899 28 1 5.8152 -2.1705 -0.8900 29 1 5.3312 -4.6351 0.8424 30 1 6.8898 -4.2194 0.0900 31 1 5.9469 -3.0919 -2.3963 32 1 7.1297 -4.4208 -2.3470 33 1 4.4283 -4.4854 -3.7674 34 1 6.0165 -4.3220 -4.5551 35 1 5.1881 -6.6788 -4.6024 36 1 6.7005 -6.5235 -3.6755 37 1 5.0875 -7.9228 -2.4383 38 1 3.8777 -6.6185 -2.5133 39 1 3.8529 -6.3268 0.1913 40 1 6.7842 -6.8431 1.0716 41 1 5.4645 -6.0211 2.0118 42 1 4.1792 -8.1005 2.1991 43 1 5.8008 -8.8932 1.9964 44 1 3.8652 -8.7545 -0.1419 45 1 5.6554 -8.7710 -0.4486 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592199570.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:16 Heat of formation + Delta-G solvation = -53.134071 kcal Electronic energy + Delta-G solvation = -21506.773899 eV Core-core repulsion = 18523.599248 eV Total energy + Delta-G solvation = -2983.174651 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.07856 -38.82386 -38.08790 -35.12210 -34.48009 -32.02021 -30.74975 -29.05394 -26.81524 -26.46122 -24.79847 -23.95594 -22.84470 -22.04734 -20.58725 -20.15733 -19.02919 -17.66928 -17.41353 -16.66621 -16.33129 -16.12642 -15.59744 -15.52291 -15.17250 -14.83242 -14.65935 -14.34500 -14.11327 -13.76114 -13.65792 -13.32191 -13.13812 -13.03750 -12.77641 -12.66708 -12.41128 -12.08520 -11.99666 -11.84040 -11.79612 -11.54805 -11.40646 -11.32997 -11.25221 -10.92221 -10.83342 -10.67490 -10.26489 -9.04547 -8.36894 -6.44292 1.31661 1.35187 1.46091 2.29115 2.92448 2.95487 3.16064 3.66155 3.74367 3.82869 3.95403 4.01728 4.11101 4.14823 4.29748 4.32261 4.38554 4.44993 4.49644 4.55308 4.59493 4.64508 4.67042 4.85162 4.85485 4.89899 4.91134 4.97135 5.02412 5.03012 5.07114 5.10680 5.12432 5.19720 5.27468 5.35021 5.40251 5.45144 5.53865 5.66245 5.95795 6.28460 6.38728 6.59894 6.82371 7.20487 8.80611 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.019910 B = 0.004795 C = 0.004377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.973565 B = 5837.907940 C = 6394.816589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.013 3.987 3 Si 0.956 3.044 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.247 1.247 7 C -0.542 4.542 8 H 0.027 0.973 9 C 0.180 3.820 10 O -0.390 6.390 11 C 0.051 3.949 12 C 0.061 3.939 13 N -0.547 5.547 14 C 0.054 3.946 15 C -0.117 4.117 16 C -0.114 4.114 17 C -0.110 4.110 18 C 0.103 3.897 19 H 0.048 0.952 20 C -0.111 4.111 21 C -0.138 4.138 22 C -0.138 4.138 23 C -0.123 4.123 24 H 0.273 0.727 25 H 0.009 0.991 26 H 0.005 0.995 27 H 0.053 0.947 28 H 0.045 0.955 29 H 0.085 0.915 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.043 0.957 33 H 0.045 0.955 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.046 0.954 39 H 0.065 0.935 40 H 0.090 0.910 41 H 0.057 0.943 42 H 0.072 0.928 43 H 0.081 0.919 44 H 0.064 0.936 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.539 -14.647 -3.015 23.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.185 4.185 3 Si 0.777 3.223 4 H -0.185 1.185 5 H -0.196 1.196 6 H -0.170 1.170 7 C -0.579 4.579 8 H 0.045 0.955 9 C 0.104 3.896 10 O -0.309 6.309 11 C -0.026 4.026 12 C -0.066 4.066 13 N -0.273 5.273 14 C -0.073 4.073 15 C -0.155 4.155 16 C -0.151 4.151 17 C -0.147 4.147 18 C -0.004 4.004 19 H 0.066 0.934 20 C -0.130 4.130 21 C -0.176 4.176 22 C -0.176 4.176 23 C -0.161 4.161 24 H 0.082 0.918 25 H 0.026 0.974 26 H 0.022 0.978 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.104 0.896 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.103 0.897 38 H 0.065 0.935 39 H 0.083 0.917 40 H 0.108 0.892 41 H 0.076 0.924 42 H 0.090 0.910 43 H 0.100 0.900 44 H 0.083 0.917 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 17.759 -14.607 -3.072 23.199 hybrid contribution 0.399 1.065 0.166 1.150 sum 18.158 -13.542 -2.906 22.837 Atomic orbital electron populations 1.70037 1.08259 1.28723 1.51266 1.25840 0.95793 1.03360 0.93481 0.85600 0.79404 0.77513 0.79747 1.18451 1.19648 1.17018 1.21144 0.91003 0.93699 1.52085 0.95493 1.20263 0.93270 0.81525 0.94523 1.87975 1.20664 1.27261 1.95048 1.22745 0.82484 0.97602 0.99747 1.22222 0.98136 0.92801 0.93446 1.61765 1.58662 1.04455 1.02369 1.22115 0.95397 0.99010 0.90824 1.21577 1.00787 0.96669 0.96494 1.21550 1.00975 0.94523 0.98070 1.21606 0.99622 1.00035 0.93486 1.21629 0.97344 0.86231 0.95238 0.93407 1.22584 0.99028 0.96912 0.94476 1.23150 0.99557 0.97796 0.97065 1.22806 1.01005 0.97188 0.96564 1.22873 1.02372 0.94239 0.96623 0.91826 0.97360 0.97764 0.92896 0.93670 0.89640 0.91828 0.92206 0.93847 0.93656 0.90216 0.91002 0.90981 0.89677 0.93538 0.91683 0.89155 0.92429 0.90954 0.90016 0.91679 0.88624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.84 13.96 21.45 0.30 -60.55 16 2 C 0.01 0.79 5.47 84.65 0.46 1.25 16 3 Si 0.96 44.57 27.47 68.60 1.88 46.45 16 4 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 5 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 6 H -0.25 -10.62 6.54 99.48 0.65 -9.97 16 7 C -0.54 -34.29 9.99 25.60 0.26 -34.03 16 8 H 0.03 1.93 8.06 -2.91 -0.02 1.90 16 9 C 0.18 9.46 4.76 71.24 0.34 9.80 16 10 O -0.39 -19.15 10.27 -148.98 -1.53 -20.68 16 11 C 0.05 1.83 5.97 71.98 0.43 2.26 16 12 C 0.06 1.81 4.66 86.30 0.40 2.21 16 13 N -0.55 -16.38 4.45 -871.13 -3.88 -20.26 16 14 C 0.05 1.44 5.29 86.32 0.46 1.89 16 15 C -0.12 -2.85 6.09 30.64 0.19 -2.67 16 16 C -0.11 -2.25 6.00 30.67 0.18 -2.06 16 17 C -0.11 -2.43 5.07 30.65 0.16 -2.28 16 18 C 0.10 2.47 1.83 44.94 0.08 2.55 16 19 H 0.05 1.01 7.83 -2.39 -0.02 0.99 16 20 C -0.11 -2.68 2.56 -10.27 -0.03 -2.71 16 21 C -0.14 -2.84 6.06 31.18 0.19 -2.65 16 22 C -0.14 -2.49 8.09 31.18 0.25 -2.24 16 23 C -0.12 -2.26 6.56 31.12 0.20 -2.05 16 24 H 0.27 16.09 8.31 -92.71 -0.77 15.32 16 25 H 0.01 0.44 7.20 -2.39 -0.02 0.42 16 26 H 0.00 0.23 7.57 -2.39 -0.02 0.22 16 27 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.05 1.53 6.17 -2.39 -0.01 1.52 16 29 H 0.09 2.63 4.61 -2.39 -0.01 2.62 16 30 H 0.06 1.49 8.13 -2.39 -0.02 1.48 16 31 H 0.06 1.78 6.07 -2.39 -0.01 1.76 16 32 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 34 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.07 1.27 8.14 -2.38 -0.02 1.26 16 36 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.08 1.50 7.12 -2.39 -0.02 1.48 16 38 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.09 1.58 7.88 -2.39 -0.02 1.56 16 41 H 0.06 1.33 7.00 -2.39 -0.02 1.31 16 42 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.10 1.42 7.80 -2.39 -0.02 1.40 16 Total: -1.00 -72.06 338.62 1.22 -70.84 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: 0.87 Total: 14.93 kcal Atomic # 6 Polarization: -34.31 SS G_CDS: 3.57 Total: -30.73 kcal Atomic # 7 Polarization: -77.22 SS G_CDS: -3.58 Total: -80.80 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -1.53 Total: -20.68 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.88 Total: 46.45 kcal Total: -72.06 1.22 -70.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592199570.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.706 kcal (2) G-P(sol) polarization free energy of solvation -72.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds