Wall clock time and date at job start Mon Mar 30 2020 07:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47465 * 2 1 4 4 C 1.53003 * 109.47241 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.46986 * 59.99658 * 4 3 2 6 6 N 1.46495 * 109.47212 * 60.00570 * 5 4 3 7 7 C 1.46508 * 119.99976 * 0.79385 * 6 5 4 8 8 C 1.34776 * 119.99972 * 180.80336 * 6 5 4 9 9 O 1.21276 * 120.00334 * 0.26701 * 8 6 5 10 10 C 1.50706 * 119.99699 * 179.97438 * 8 6 5 11 11 C 1.52998 * 109.46806 * 179.97438 * 10 8 6 12 12 C 1.52995 * 109.47155 * 179.97438 * 11 10 8 13 13 C 1.50704 * 109.47263 * 180.02562 * 12 11 10 14 14 H 1.07993 * 119.99767 * 359.97438 * 13 12 11 15 15 C 1.37881 * 119.99878 * 180.02562 * 13 12 11 16 16 N 1.31509 * 119.99621 * 179.97438 * 15 13 12 17 17 Si 1.86794 * 120.00143 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.47500 * 90.00199 * 17 15 13 19 19 H 1.48498 * 109.47388 * 210.00430 * 17 15 13 20 20 H 1.48504 * 109.47478 * 330.00154 * 17 15 13 21 21 C 1.53001 * 109.47271 * 299.99904 * 5 4 3 22 22 C 1.52995 * 109.46821 * 60.00122 * 21 5 4 23 23 H 1.08999 * 109.47297 * 59.99864 * 1 2 3 24 24 H 1.08997 * 109.47158 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46683 * 300.00356 * 1 2 3 26 26 H 1.08999 * 109.47297 * 120.00136 * 2 1 3 27 27 H 1.08995 * 109.47409 * 60.00226 * 3 2 1 28 28 H 1.09000 * 109.46717 * 299.99852 * 3 2 1 29 29 H 1.08999 * 109.47191 * 299.99933 * 4 3 2 30 30 H 1.08997 * 109.46934 * 179.97438 * 4 3 2 31 31 H 1.09004 * 109.46791 * 180.02562 * 5 4 3 32 32 H 1.09004 * 109.46804 * 264.08697 * 7 6 5 33 33 H 1.08994 * 109.46973 * 24.08799 * 7 6 5 34 34 H 1.08994 * 109.46963 * 144.09061 * 7 6 5 35 35 H 1.08997 * 109.46864 * 299.99177 * 10 8 6 36 36 H 1.08996 * 109.47735 * 59.99568 * 10 8 6 37 37 H 1.09002 * 109.47584 * 299.99587 * 11 10 8 38 38 H 1.09008 * 109.47270 * 59.99722 * 11 10 8 39 39 H 1.09001 * 109.47448 * 299.99986 * 12 11 10 40 40 H 1.08996 * 109.47284 * 60.00102 * 12 11 10 41 41 H 0.97010 * 119.99824 * 179.97438 * 16 15 13 42 42 H 1.08995 * 109.46817 * 180.02562 * 21 5 4 43 43 H 1.09000 * 109.47059 * 300.00457 * 21 5 4 44 44 H 1.09002 * 109.47306 * 179.97438 * 22 21 5 45 45 H 1.09009 * 109.47324 * 59.99780 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0795 0.7212 -1.2502 6 7 3.5908 1.4120 -2.4461 7 6 2.7632 2.6133 -2.3113 8 6 3.9025 0.9422 -3.6703 9 8 4.5834 -0.0551 -3.7819 10 6 3.3992 1.6526 -4.9005 11 6 3.8927 0.9203 -6.1499 12 6 3.3813 1.6410 -7.3988 13 6 3.8669 0.9193 -8.6295 14 1 4.4793 0.0353 -8.5307 15 6 3.5300 1.3883 -9.8816 16 7 3.9542 0.7588 -10.9555 17 14 2.4713 2.9177 -10.0525 18 1 3.3425 4.1190 -10.1095 19 1 1.6696 2.8281 -11.2992 20 1 1.5601 3.0221 -8.8845 21 6 3.5695 -0.7213 -1.2502 22 6 2.0395 -0.7212 -1.2495 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6768 1.9563 0.8899 28 1 1.6767 1.9562 -0.8900 29 1 3.9338 0.9284 0.8891 30 1 3.9334 2.4700 -0.0011 31 1 5.1696 0.7208 -1.2504 32 1 1.7103 2.3381 -2.3748 33 1 2.9585 3.0827 -1.3472 34 1 3.0048 3.3127 -3.1116 35 1 2.3094 1.6646 -4.8927 36 1 3.7739 2.6761 -4.9079 37 1 4.9826 0.9085 -6.1575 38 1 3.5183 -0.1035 -6.1427 39 1 2.2914 1.6524 -7.3911 40 1 3.7553 2.6647 -7.4063 41 1 3.7169 1.0885 -11.8365 42 1 3.9328 -1.2351 -2.1401 43 1 3.9331 -1.2352 -0.3603 44 1 1.6761 -1.7488 -1.2499 45 1 1.6758 -0.2072 -2.1393 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593952424.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:17 Heat of formation + Delta-G solvation = -53.273249 kcal Electronic energy + Delta-G solvation = -21335.859547 eV Core-core repulsion = 18352.678861 eV Total energy + Delta-G solvation = -2983.180687 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.72327 -38.24792 -35.00319 -34.32018 -32.38554 -31.65182 -31.21612 -28.34453 -27.45246 -25.63957 -23.74860 -22.87893 -21.42796 -20.41987 -19.70090 -18.63152 -16.78655 -16.54642 -16.29074 -15.79935 -15.10599 -14.68992 -14.32685 -14.18451 -13.98423 -13.51567 -13.43548 -12.90498 -12.80532 -12.57488 -12.42788 -12.26889 -12.06372 -11.85426 -11.74144 -11.64837 -11.53730 -11.08692 -10.91011 -10.76232 -10.47648 -10.39011 -10.24087 -9.91781 -9.73063 -9.65528 -9.24400 -9.07514 -8.54688 -8.48844 -5.98553 -3.96046 2.91594 3.06152 3.32927 3.39948 3.42988 4.39342 4.49025 4.49818 4.53393 4.79448 4.95493 4.98480 5.04273 5.18909 5.22750 5.27802 5.34735 5.35899 5.37436 5.45211 5.51085 5.53140 5.59389 5.62175 5.65962 5.74880 5.83441 5.88199 5.97140 6.07731 6.11837 6.14749 6.23675 6.33594 6.60427 6.65080 6.75325 6.96058 7.40137 7.49052 7.50948 7.85292 8.44857 8.61985 9.08495 9.63647 11.15240 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.029904 B = 0.003830 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.089373 B = 7308.821299 C = 7488.195546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.090 4.090 3 C -0.142 4.142 4 C -0.125 4.125 5 C 0.152 3.848 6 N -0.617 5.617 7 C 0.070 3.930 8 C 0.514 3.486 9 O -0.531 6.531 10 C -0.140 4.140 11 C -0.087 4.087 12 C -0.014 4.014 13 C -0.518 4.518 14 H 0.072 0.928 15 C 0.064 3.936 16 N -0.905 5.905 17 Si 0.881 3.119 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.266 1.266 21 C -0.138 4.138 22 C -0.109 4.109 23 H 0.054 0.946 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.089 0.911 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.014 0.986 40 H 0.010 0.990 41 H 0.262 0.738 42 H 0.088 0.912 43 H 0.064 0.936 44 H 0.058 0.942 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.941 3.985 26.118 27.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.108 4.108 3 C -0.179 4.179 4 C -0.163 4.163 5 C 0.049 3.951 6 N -0.352 5.352 7 C -0.073 4.073 8 C 0.303 3.697 9 O -0.407 6.407 10 C -0.180 4.180 11 C -0.125 4.125 12 C -0.051 4.051 13 C -0.556 4.556 14 H 0.090 0.910 15 C -0.137 4.137 16 N -0.544 5.544 17 Si 0.708 3.292 18 H -0.204 1.204 19 H -0.215 1.215 20 H -0.191 1.191 21 C -0.176 4.176 22 C -0.147 4.147 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.107 0.893 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.099 0.901 34 H 0.087 0.913 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.033 0.967 40 H 0.028 0.972 41 H 0.072 0.928 42 H 0.106 0.894 43 H 0.083 0.917 44 H 0.077 0.923 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.576 3.450 25.864 26.683 hybrid contribution -0.592 0.870 -0.148 1.062 sum -6.169 4.320 25.717 26.797 Atomic orbital electron populations 1.21823 0.95423 1.01632 1.01545 1.21119 0.95247 0.96017 0.98464 1.22255 0.94934 0.97271 1.03432 1.21820 0.96540 1.00626 0.97283 1.20928 0.97956 0.92180 0.84043 1.47994 1.53048 1.28464 1.05734 1.22115 0.94606 0.87391 1.03161 1.21083 0.79609 0.84707 0.84260 1.90644 1.38139 1.25597 1.86357 1.21891 1.02010 1.00671 0.93380 1.21262 1.00844 0.99042 0.91353 1.19601 0.96101 0.95693 0.93743 1.21174 1.32413 1.12902 0.89100 0.90952 1.25052 0.95779 0.96951 0.95876 1.69928 1.46203 1.40444 0.97851 0.86762 0.81062 0.83786 0.77541 1.20355 1.21455 1.19063 1.21957 0.95872 0.96322 1.03465 1.21504 0.95474 1.00022 0.97683 0.92698 0.92814 0.92955 0.91676 0.92173 0.89325 0.90674 0.91315 0.91132 0.92255 0.90140 0.91293 0.89622 0.89578 0.92177 0.92149 0.96732 0.97167 0.92820 0.89363 0.91702 0.92316 0.91938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.19 37.16 0.34 -0.77 16 2 C -0.09 -0.74 2.72 -90.62 -0.25 -0.99 16 3 C -0.14 -1.04 4.55 -26.73 -0.12 -1.16 16 4 C -0.13 -0.96 4.91 -26.73 -0.13 -1.09 16 5 C 0.15 1.65 2.95 -67.93 -0.20 1.45 16 6 N -0.62 -7.33 2.25 -173.93 -0.39 -7.72 16 7 C 0.07 0.60 8.00 59.85 0.48 1.08 16 8 C 0.51 8.16 7.38 -10.98 -0.08 8.08 16 9 O -0.53 -10.41 14.02 5.56 0.08 -10.33 16 10 C -0.14 -2.23 4.33 -27.88 -0.12 -2.35 16 11 C -0.09 -1.84 4.44 -26.73 -0.12 -1.96 16 12 C -0.01 -0.34 4.04 -27.88 -0.11 -0.45 16 13 C -0.52 -15.29 9.66 -34.44 -0.33 -15.63 16 14 H 0.07 2.32 7.99 -52.49 -0.42 1.91 16 15 C 0.06 1.91 5.47 -17.82 -0.10 1.82 16 16 N -0.90 -28.60 13.96 55.43 0.77 -27.83 16 17 Si 0.88 21.92 27.47 -169.99 -4.67 17.25 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 20 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 21 C -0.14 -1.59 5.23 -26.73 -0.14 -1.73 16 22 C -0.11 -1.14 5.04 -26.73 -0.13 -1.28 16 23 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.09 0.66 3.66 -51.93 -0.19 0.47 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.47 6.89 -51.93 -0.36 0.11 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.06 0.47 6.70 -51.93 -0.35 0.12 16 33 H 0.08 0.53 4.95 -51.93 -0.26 0.28 16 34 H 0.07 0.57 6.69 -51.93 -0.35 0.22 16 35 H 0.09 1.23 8.11 -51.93 -0.42 0.81 16 36 H 0.09 1.22 7.42 -51.93 -0.39 0.84 16 37 H 0.06 1.35 8.10 -51.93 -0.42 0.92 16 38 H 0.06 1.35 8.10 -51.92 -0.42 0.93 16 39 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 40 H 0.01 0.24 7.57 -51.93 -0.39 -0.16 16 41 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 42 H 0.09 1.31 6.10 -51.93 -0.32 1.00 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.06 0.75 7.60 -51.92 -0.39 0.35 16 LS Contribution 335.04 15.07 5.05 5.05 Total: -1.00 -33.27 335.04 -8.19 -41.47 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -8.02 Total: -2.90 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: -1.02 Total: -14.99 kcal Atomic # 7 Polarization: -35.93 SS G_CDS: 0.38 Total: -35.55 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.08 Total: -10.33 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.67 Total: 17.25 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.27 -8.19 -41.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593952424.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.807 kcal (2) G-P(sol) polarization free energy of solvation -33.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds