Wall clock time and date at job start Mon Mar 30 2020 07:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.53000 * 109.47060 * 300.00449 * 3 2 1 5 5 C 1.53002 * 109.47233 * 299.99657 * 4 3 2 6 6 C 1.52997 * 109.47415 * 180.02562 * 5 4 3 7 7 N 1.46493 * 109.47228 * 175.00130 * 6 5 4 8 8 C 1.34782 * 120.00325 * 180.02562 * 7 6 5 9 9 O 1.21286 * 119.99590 * 359.97438 * 8 7 6 10 10 C 1.50694 * 120.00477 * 180.02562 * 8 7 6 11 11 C 1.52997 * 109.47380 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.47260 * 179.97438 * 11 10 8 13 13 C 1.50697 * 109.46960 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00123 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99805 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00171 * 180.02562 * 15 13 12 17 17 Si 1.86799 * 119.99939 * 359.97438 * 15 13 12 18 18 H 1.48505 * 109.47251 * 90.00504 * 17 15 13 19 19 H 1.48504 * 109.47155 * 209.99855 * 17 15 13 20 20 H 1.48495 * 109.47229 * 330.00238 * 17 15 13 21 21 C 1.52997 * 109.46817 * 60.00194 * 5 4 3 22 22 C 1.52999 * 109.46623 * 240.00064 * 2 1 3 23 23 H 1.08993 * 109.46955 * 60.00011 * 1 2 3 24 24 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47002 * 299.99574 * 1 2 3 26 26 H 1.08996 * 109.46884 * 120.00752 * 2 1 3 27 27 H 1.09002 * 109.47153 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.46832 * 60.00321 * 3 2 1 29 29 H 1.08992 * 109.47399 * 59.99823 * 4 3 2 30 30 H 1.09004 * 109.46724 * 180.02562 * 4 3 2 31 31 H 1.09002 * 109.47075 * 300.00932 * 5 4 3 32 32 H 1.09000 * 109.46818 * 295.00198 * 6 5 4 33 33 H 1.09001 * 109.47096 * 55.00094 * 6 5 4 34 34 H 0.97003 * 120.00270 * 0.02562 * 7 6 5 35 35 H 1.09000 * 109.46998 * 300.00095 * 10 8 7 36 36 H 1.09001 * 109.47227 * 59.99631 * 10 8 7 37 37 H 1.09000 * 109.46818 * 299.99834 * 11 10 8 38 38 H 1.09001 * 109.47096 * 59.99730 * 11 10 8 39 39 H 1.09001 * 109.46578 * 299.99690 * 12 11 10 40 40 H 1.09001 * 109.47254 * 59.99866 * 12 11 10 41 41 H 0.96997 * 120.00137 * 180.02562 * 16 15 13 42 42 H 1.09002 * 109.47153 * 60.00231 * 21 5 4 43 43 H 1.09001 * 109.47289 * 180.02562 * 21 5 4 44 44 H 1.09000 * 109.47486 * 299.99829 * 22 2 1 45 45 H 1.09002 * 109.46716 * 179.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5300 2.1637 -1.2492 5 6 2.0399 1.4426 -2.4985 6 6 1.5304 2.1642 -3.7477 7 7 2.1145 1.5466 -4.9408 8 6 1.8068 2.0207 -6.1644 9 8 1.0459 2.9583 -6.2776 10 6 2.4071 1.3851 -7.3917 11 6 1.8977 2.1067 -8.6409 12 6 2.5078 1.4618 -9.8870 13 6 2.0065 2.1731 -11.1173 14 1 1.3209 3.0019 -11.0203 15 6 2.4222 1.7650 -12.3670 16 7 1.9851 2.3860 -13.4408 17 14 3.6073 0.3309 -12.5349 18 1 2.8395 -0.9350 -12.6502 19 1 4.4403 0.5168 -13.7502 20 1 4.4843 0.2707 -11.3381 21 6 1.5299 0.0001 -2.4985 22 6 2.0399 -0.7213 -1.2493 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.1301 1.4425 -0.0005 28 1 1.6767 1.9562 0.8900 29 1 0.4400 2.1637 -1.2492 30 1 1.8937 3.1913 -1.2494 31 1 3.1299 1.4425 -2.4985 32 1 0.4441 2.0876 -3.7938 33 1 1.8191 3.2143 -3.7038 34 1 2.7228 0.7964 -4.8503 35 1 3.4935 1.4608 -7.3456 36 1 2.1177 0.3351 -7.4357 37 1 0.8113 2.0306 -8.6868 38 1 2.1868 3.1568 -8.5972 39 1 3.5941 1.5384 -9.8408 40 1 2.2191 0.4116 -9.9310 41 1 2.2772 2.0986 -14.3199 42 1 0.4399 0.0001 -2.4985 43 1 1.8936 -0.5139 -3.3883 44 1 1.6766 -1.7489 -1.2493 45 1 3.1300 -0.7209 -1.2495 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593967909.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:46 Heat of formation + Delta-G solvation = -89.107696 kcal Electronic energy + Delta-G solvation = -20173.879924 eV Core-core repulsion = 17189.145340 eV Total energy + Delta-G solvation = -2984.734585 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.05350 -39.05027 -35.28166 -34.22564 -32.36864 -31.91163 -31.13214 -28.75953 -27.58373 -25.34628 -23.46919 -22.95423 -21.30510 -20.44176 -19.77250 -18.95436 -16.98988 -16.48337 -16.05313 -15.81237 -15.57393 -14.99096 -14.60830 -14.27858 -14.11229 -13.70040 -13.37431 -13.12764 -13.07016 -12.60355 -12.58419 -12.38402 -11.98978 -11.91858 -11.73113 -11.54997 -11.38061 -11.26752 -10.94515 -10.75906 -10.56708 -10.42084 -10.34483 -9.97251 -9.80915 -9.67076 -9.37337 -9.10155 -8.99198 -8.48799 -5.98476 -3.96067 2.92575 3.30470 3.33160 3.40165 3.43292 4.23345 4.30568 4.35963 4.49107 4.72693 4.80619 4.83450 4.99082 5.05448 5.12532 5.16765 5.22065 5.31915 5.34803 5.42577 5.48297 5.54596 5.60773 5.62624 5.65779 5.66104 5.71585 5.77062 5.80801 5.91743 5.99860 6.02545 6.14941 6.18456 6.49982 6.60039 6.73084 6.95789 7.41049 7.48984 7.60563 7.85353 8.45877 8.61971 9.08497 9.63614 11.15271 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.042346 B = 0.002760 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.068298 B =10143.739059 C =10493.149440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.093 4.093 3 C -0.113 4.113 4 C -0.114 4.114 5 C -0.097 4.097 6 C 0.123 3.877 7 N -0.739 5.739 8 C 0.511 3.489 9 O -0.536 6.536 10 C -0.142 4.142 11 C -0.087 4.087 12 C -0.015 4.015 13 C -0.518 4.518 14 H 0.072 0.928 15 C 0.064 3.936 16 N -0.905 5.905 17 Si 0.882 3.118 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.266 1.266 21 C -0.118 4.118 22 C -0.114 4.114 23 H 0.063 0.937 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.398 0.602 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.015 0.985 40 H 0.011 0.989 41 H 0.262 0.738 42 H 0.068 0.932 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.777 -7.033 30.066 30.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.111 4.111 3 C -0.150 4.150 4 C -0.152 4.152 5 C -0.116 4.116 6 C -0.001 4.001 7 N -0.393 5.393 8 C 0.298 3.702 9 O -0.412 6.412 10 C -0.182 4.182 11 C -0.125 4.125 12 C -0.052 4.052 13 C -0.556 4.556 14 H 0.091 0.909 15 C -0.137 4.137 16 N -0.544 5.544 17 Si 0.709 3.291 18 H -0.204 1.204 19 H -0.215 1.215 20 H -0.190 1.190 21 C -0.155 4.155 22 C -0.152 4.152 23 H 0.082 0.918 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.232 0.768 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.033 0.967 40 H 0.029 0.971 41 H 0.072 0.928 42 H 0.087 0.913 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.223 -6.330 29.780 30.470 hybrid contribution 0.925 -1.142 -0.158 1.479 sum 2.149 -7.472 29.621 30.625 Atomic orbital electron populations 1.21954 0.95309 1.01647 1.02043 1.21104 0.96009 0.96011 0.98008 1.21545 1.00535 0.95266 0.97699 1.21541 1.01374 0.98858 0.93433 1.21396 1.00855 0.95335 0.94018 1.21339 0.98326 0.96993 0.83429 1.46137 1.50197 1.37031 1.05936 1.21161 0.81015 0.83372 0.84605 1.90693 1.35599 1.28226 1.86703 1.21863 1.01605 1.01317 0.93378 1.21260 1.00663 0.99278 0.91336 1.19609 0.95991 0.95850 0.93744 1.21174 1.28077 1.17114 0.89249 0.90939 1.25060 0.96132 0.96644 0.95871 1.69926 1.45077 1.41448 0.97967 0.86754 0.81646 0.83086 0.77608 1.20365 1.21470 1.19045 1.21653 1.01409 0.94710 0.97753 1.21565 1.00510 0.98820 0.94301 0.91845 0.92912 0.92934 0.91508 0.92000 0.91951 0.91274 0.91708 0.90612 0.91759 0.91750 0.76813 0.89451 0.89458 0.92130 0.92108 0.96683 0.97116 0.92816 0.91335 0.91868 0.91984 0.92014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 8.50 37.16 0.32 -0.60 16 2 C -0.09 -0.54 3.20 -90.62 -0.29 -0.83 16 3 C -0.11 -0.66 5.45 -26.73 -0.15 -0.81 16 4 C -0.11 -0.76 4.93 -26.73 -0.13 -0.89 16 5 C -0.10 -0.70 2.22 -90.62 -0.20 -0.91 16 6 C 0.12 1.26 5.07 -4.05 -0.02 1.24 16 7 N -0.74 -8.34 5.28 -60.30 -0.32 -8.65 16 8 C 0.51 8.05 7.83 -10.99 -0.09 7.97 16 9 O -0.54 -10.82 15.98 5.55 0.09 -10.73 16 10 C -0.14 -2.23 5.70 -27.89 -0.16 -2.39 16 11 C -0.09 -1.85 4.44 -26.73 -0.12 -1.97 16 12 C -0.01 -0.35 4.04 -27.88 -0.11 -0.47 16 13 C -0.52 -15.32 9.66 -34.44 -0.33 -15.65 16 14 H 0.07 2.33 7.99 -52.49 -0.42 1.91 16 15 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 16 N -0.90 -28.62 13.96 55.43 0.77 -27.85 16 17 Si 0.88 21.95 27.47 -169.99 -4.67 17.28 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 20 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 21 C -0.12 -0.81 4.80 -26.73 -0.13 -0.94 16 22 C -0.11 -0.70 5.45 -26.73 -0.15 -0.84 16 23 H 0.06 0.41 4.81 -51.93 -0.25 0.16 16 24 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 25 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.47 6.43 -51.93 -0.33 0.14 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.40 3.37 7.65 -40.82 -0.31 3.06 16 35 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 37 H 0.06 1.35 8.10 -51.93 -0.42 0.93 16 38 H 0.06 1.36 8.10 -51.93 -0.42 0.94 16 39 H 0.01 0.36 7.20 -51.93 -0.37 -0.02 16 40 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 41 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 42 H 0.07 0.52 6.43 -51.93 -0.33 0.18 16 43 H 0.06 0.44 7.18 -51.93 -0.37 0.06 16 44 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 345.82 15.07 5.21 5.21 Total: -1.00 -33.77 345.82 -8.86 -42.63 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -8.29 Total: -2.61 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: -1.65 Total: -15.28 kcal Atomic # 7 Polarization: -36.96 SS G_CDS: 0.45 Total: -36.51 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.09 Total: -10.73 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.67 Total: 17.28 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.77 -8.86 -42.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593967909.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.476 kcal (2) G-P(sol) polarization free energy of solvation -33.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds