Wall clock time and date at job start Mon Mar 30 2020 07:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.53000 * 109.47060 * 300.00449 * 3 2 1 5 5 C 1.53002 * 109.47233 * 299.99657 * 4 3 2 6 6 C 1.52997 * 109.47415 * 180.02562 * 5 4 3 7 7 N 1.46493 * 109.47228 * 175.00130 * 6 5 4 8 8 C 1.34782 * 120.00325 * 180.02562 * 7 6 5 9 9 O 1.21286 * 119.99590 * 359.97438 * 8 7 6 10 10 C 1.50694 * 120.00477 * 180.02562 * 8 7 6 11 11 C 1.52997 * 109.47380 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.47260 * 179.97438 * 11 10 8 13 13 C 1.50697 * 109.46960 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00123 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99805 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00171 * 180.02562 * 15 13 12 17 17 Si 1.86799 * 119.99939 * 359.97438 * 15 13 12 18 18 H 1.48505 * 109.47251 * 90.00504 * 17 15 13 19 19 H 1.48504 * 109.47155 * 209.99855 * 17 15 13 20 20 H 1.48495 * 109.47229 * 330.00238 * 17 15 13 21 21 C 1.52997 * 109.46817 * 60.00194 * 5 4 3 22 22 C 1.52999 * 109.46623 * 240.00064 * 2 1 3 23 23 H 1.08993 * 109.46955 * 60.00011 * 1 2 3 24 24 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47002 * 299.99574 * 1 2 3 26 26 H 1.08996 * 109.46884 * 120.00752 * 2 1 3 27 27 H 1.09002 * 109.47153 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.46832 * 60.00321 * 3 2 1 29 29 H 1.08992 * 109.47399 * 59.99823 * 4 3 2 30 30 H 1.09004 * 109.46724 * 180.02562 * 4 3 2 31 31 H 1.09002 * 109.47075 * 300.00932 * 5 4 3 32 32 H 1.09000 * 109.46818 * 295.00198 * 6 5 4 33 33 H 1.09001 * 109.47096 * 55.00094 * 6 5 4 34 34 H 0.97003 * 120.00270 * 0.02562 * 7 6 5 35 35 H 1.09000 * 109.46998 * 300.00095 * 10 8 7 36 36 H 1.09001 * 109.47227 * 59.99631 * 10 8 7 37 37 H 1.09000 * 109.46818 * 299.99834 * 11 10 8 38 38 H 1.09001 * 109.47096 * 59.99730 * 11 10 8 39 39 H 1.09001 * 109.46578 * 299.99690 * 12 11 10 40 40 H 1.09001 * 109.47254 * 59.99866 * 12 11 10 41 41 H 0.96997 * 120.00137 * 180.02562 * 16 15 13 42 42 H 1.09002 * 109.47153 * 60.00231 * 21 5 4 43 43 H 1.09001 * 109.47289 * 180.02562 * 21 5 4 44 44 H 1.09000 * 109.47486 * 299.99829 * 22 2 1 45 45 H 1.09002 * 109.46716 * 179.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5300 2.1637 -1.2492 5 6 2.0399 1.4426 -2.4985 6 6 1.5304 2.1642 -3.7477 7 7 2.1145 1.5466 -4.9408 8 6 1.8068 2.0207 -6.1644 9 8 1.0459 2.9583 -6.2776 10 6 2.4071 1.3851 -7.3917 11 6 1.8977 2.1067 -8.6409 12 6 2.5078 1.4618 -9.8870 13 6 2.0065 2.1731 -11.1173 14 1 1.3209 3.0019 -11.0203 15 6 2.4222 1.7650 -12.3670 16 7 1.9851 2.3860 -13.4408 17 14 3.6073 0.3309 -12.5349 18 1 2.8395 -0.9350 -12.6502 19 1 4.4403 0.5168 -13.7502 20 1 4.4843 0.2707 -11.3381 21 6 1.5299 0.0001 -2.4985 22 6 2.0399 -0.7213 -1.2493 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.1301 1.4425 -0.0005 28 1 1.6767 1.9562 0.8900 29 1 0.4400 2.1637 -1.2492 30 1 1.8937 3.1913 -1.2494 31 1 3.1299 1.4425 -2.4985 32 1 0.4441 2.0876 -3.7938 33 1 1.8191 3.2143 -3.7038 34 1 2.7228 0.7964 -4.8503 35 1 3.4935 1.4608 -7.3456 36 1 2.1177 0.3351 -7.4357 37 1 0.8113 2.0306 -8.6868 38 1 2.1868 3.1568 -8.5972 39 1 3.5941 1.5384 -9.8408 40 1 2.2191 0.4116 -9.9310 41 1 2.2772 2.0986 -14.3199 42 1 0.4399 0.0001 -2.4985 43 1 1.8936 -0.5139 -3.3883 44 1 1.6766 -1.7489 -1.2493 45 1 3.1300 -0.7209 -1.2495 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593967909.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:45 Heat of formation + Delta-G solvation = -110.413000 kcal Electronic energy + Delta-G solvation = -20174.803792 eV Core-core repulsion = 17189.145340 eV Total energy + Delta-G solvation = -2985.658452 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.96811 -39.93809 -36.37485 -35.93363 -34.14023 -33.00823 -31.64115 -30.33182 -28.40569 -26.36571 -24.94907 -23.55413 -22.15322 -21.90452 -21.15363 -19.47952 -18.93237 -17.87768 -16.90718 -16.86008 -16.57530 -16.21987 -15.67039 -15.42624 -14.93587 -14.79789 -14.69151 -14.52785 -13.93363 -13.85034 -13.60091 -13.34258 -13.10382 -12.95121 -12.69249 -12.49297 -12.44514 -12.34802 -11.86604 -11.80596 -11.78163 -11.72290 -11.48904 -11.32174 -11.10045 -10.98499 -10.86009 -10.74425 -10.70859 -10.05386 -8.27154 -6.32876 1.39036 1.42790 1.54970 1.69100 2.26916 2.39843 3.07850 3.65099 3.77533 3.83238 3.93450 4.16890 4.17944 4.27040 4.27797 4.30631 4.49868 4.51918 4.62507 4.66956 4.71517 4.78723 4.87421 4.89473 4.93513 4.97879 5.02002 5.04118 5.05197 5.18484 5.20001 5.21908 5.30530 5.41537 5.47239 5.50054 5.53621 5.58827 5.61199 5.68459 5.68960 6.31501 6.60343 6.75948 7.30960 7.32827 8.90594 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.042346 B = 0.002760 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.068298 B =10143.739059 C =10493.149440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.093 4.093 3 C -0.110 4.110 4 C -0.115 4.115 5 C -0.085 4.085 6 C 0.123 3.877 7 N -0.716 5.716 8 C 0.510 3.490 9 O -0.592 6.592 10 C -0.131 4.131 11 C -0.081 4.081 12 C -0.009 4.009 13 C -0.541 4.541 14 H 0.018 0.982 15 C -0.005 4.005 16 N -0.958 5.958 17 Si 0.963 3.037 18 H -0.264 1.264 19 H -0.286 1.286 20 H -0.235 1.235 21 C -0.117 4.117 22 C -0.112 4.112 23 H 0.055 0.945 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.087 0.913 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.416 0.584 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.035 0.965 38 H 0.035 0.965 39 H 0.031 0.969 40 H 0.030 0.970 41 H 0.266 0.734 42 H 0.059 0.941 43 H 0.066 0.934 44 H 0.064 0.936 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.161 -9.914 32.113 33.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.111 4.111 3 C -0.147 4.147 4 C -0.153 4.153 5 C -0.104 4.104 6 C -0.001 4.001 7 N -0.369 5.369 8 C 0.298 3.702 9 O -0.472 6.472 10 C -0.171 4.171 11 C -0.120 4.120 12 C -0.046 4.046 13 C -0.579 4.579 14 H 0.037 0.963 15 C -0.200 4.200 16 N -0.598 5.598 17 Si 0.785 3.215 18 H -0.189 1.189 19 H -0.212 1.212 20 H -0.158 1.158 21 C -0.155 4.155 22 C -0.149 4.149 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.091 0.909 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.105 0.895 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.254 0.746 35 H 0.135 0.865 36 H 0.136 0.864 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.049 0.951 40 H 0.048 0.952 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.085 0.915 44 H 0.083 0.917 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.627 -9.241 31.887 33.397 hybrid contribution 0.083 -0.141 -0.785 0.802 sum 3.710 -9.383 31.103 32.698 Atomic orbital electron populations 1.21951 0.95644 1.01602 1.01767 1.21118 0.95712 0.96018 0.98274 1.21524 1.00797 0.95171 0.97224 1.21543 1.01119 0.98947 0.93648 1.21315 1.01295 0.95274 0.92488 1.21410 0.97632 0.96866 0.84179 1.45916 1.49358 1.36759 1.04870 1.21190 0.80402 0.82722 0.85907 1.90685 1.38221 1.30769 1.87512 1.21720 1.03091 1.01873 0.90370 1.21045 0.99114 0.98486 0.93332 1.19548 0.96687 0.96153 0.92243 1.21570 1.27609 1.16436 0.92244 0.96341 1.26224 0.98411 1.00384 0.95029 1.70110 1.47026 1.43846 0.98852 0.85474 0.78958 0.78334 0.78712 1.18881 1.21235 1.15790 1.21647 1.00921 0.94379 0.98519 1.21546 1.00873 0.98773 0.93709 0.92639 0.92846 0.92726 0.90852 0.91473 0.91562 0.91812 0.91802 0.89511 0.93132 0.92923 0.74631 0.86474 0.86433 0.94645 0.94647 0.95073 0.95202 0.92507 0.92233 0.91494 0.91737 0.91323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 8.50 71.98 0.61 -1.00 16 2 C -0.09 -0.88 3.20 -10.79 -0.03 -0.92 16 3 C -0.11 -1.06 5.45 30.59 0.17 -0.89 16 4 C -0.11 -1.36 4.93 30.60 0.15 -1.21 16 5 C -0.08 -1.06 2.22 -10.79 -0.02 -1.08 16 6 C 0.12 2.39 5.07 86.38 0.44 2.83 16 7 N -0.72 -14.60 5.28 -463.07 -2.45 -17.05 16 8 C 0.51 15.46 7.83 87.65 0.69 16.14 16 9 O -0.59 -24.38 15.98 -3.05 -0.05 -24.43 16 10 C -0.13 -3.77 5.70 29.85 0.17 -3.60 16 11 C -0.08 -3.45 4.44 30.59 0.14 -3.32 16 12 C -0.01 -0.42 4.04 29.85 0.12 -0.30 16 13 C -0.54 -32.87 9.66 25.60 0.25 -32.62 16 14 H 0.02 1.26 7.99 -2.91 -0.02 1.24 16 15 C 0.00 -0.28 5.47 84.65 0.46 0.18 16 16 N -0.96 -62.32 13.96 21.45 0.30 -62.03 16 17 Si 0.96 44.13 27.47 68.60 1.88 46.02 16 18 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 19 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 20 H -0.24 -9.56 6.54 99.48 0.65 -8.91 16 21 C -0.12 -1.35 4.80 30.60 0.15 -1.20 16 22 C -0.11 -1.06 5.45 30.60 0.17 -0.90 16 23 H 0.05 0.67 4.81 -2.39 -0.01 0.66 16 24 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 25 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.06 0.83 6.43 -2.39 -0.02 0.81 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.42 5.53 7.65 -92.71 -0.71 4.82 16 35 H 0.12 2.73 8.14 -2.39 -0.02 2.71 16 36 H 0.12 2.73 8.14 -2.39 -0.02 2.71 16 37 H 0.03 1.63 8.10 -2.39 -0.02 1.61 16 38 H 0.03 1.63 8.10 -2.39 -0.02 1.61 16 39 H 0.03 1.37 7.20 -2.39 -0.02 1.36 16 40 H 0.03 1.30 7.57 -2.39 -0.02 1.28 16 41 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 42 H 0.06 0.81 6.43 -2.39 -0.02 0.80 16 43 H 0.07 0.72 7.18 -2.39 -0.02 0.71 16 44 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 45 H 0.07 0.58 8.14 -2.39 -0.02 0.57 16 Total: -1.00 -77.09 345.82 3.31 -73.78 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: 0.18 Total: 11.60 kcal Atomic # 6 Polarization: -31.34 SS G_CDS: 3.45 Total: -27.89 kcal Atomic # 7 Polarization: -76.93 SS G_CDS: -2.15 Total: -79.08 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -0.05 Total: -24.43 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.88 Total: 46.02 kcal Total: -77.09 3.31 -73.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593967909.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.633 kcal (2) G-P(sol) polarization free energy of solvation -77.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds