Wall clock time and date at job start Mon Mar 30 2020 07:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47220 * 2 1 4 4 C 1.53000 * 109.47220 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.47166 * 60.00354 * 4 3 2 6 6 C 1.53000 * 109.47166 * 179.97438 * 5 4 3 7 7 N 1.46498 * 109.47059 * 59.99736 * 5 4 3 8 8 C 1.34777 * 119.99828 * 179.72339 * 7 5 4 9 9 O 1.21283 * 120.00222 * 0.28168 * 8 7 5 10 10 C 1.50703 * 120.00290 * 180.27728 * 8 7 5 11 11 C 1.52990 * 109.47398 * 180.02562 * 10 8 7 12 12 C 1.52995 * 109.47353 * 179.97438 * 11 10 8 13 13 C 1.50702 * 109.47846 * 180.02562 * 12 11 10 14 14 H 1.08010 * 119.99192 * 0.02562 * 13 12 11 15 15 C 1.37869 * 120.00564 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99836 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00096 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.46726 * 60.00418 * 17 15 13 19 19 H 1.48496 * 109.47105 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47194 * 300.00214 * 17 15 13 21 21 C 1.52997 * 109.46762 * 299.99926 * 5 4 3 22 22 C 1.52996 * 109.47166 * 240.00354 * 2 1 3 23 23 H 1.09003 * 109.47049 * 59.99901 * 1 2 3 24 24 H 1.08990 * 109.47258 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46739 * 299.99976 * 1 2 3 26 26 H 1.08994 * 109.47175 * 120.00335 * 2 1 3 27 27 H 1.09001 * 109.47245 * 60.00334 * 3 2 1 28 28 H 1.08999 * 109.47547 * 300.00670 * 3 2 1 29 29 H 1.09003 * 109.47049 * 300.00098 * 4 3 2 30 30 H 1.09004 * 109.47131 * 180.02562 * 4 3 2 31 31 H 1.08998 * 109.47559 * 299.99905 * 6 5 4 32 32 H 1.09003 * 109.47049 * 59.99744 * 6 5 4 33 33 H 1.09001 * 109.47192 * 179.97438 * 6 5 4 34 34 H 0.97001 * 120.00384 * 0.02562 * 7 5 4 35 35 H 1.08998 * 109.46954 * 300.00581 * 10 8 7 36 36 H 1.09002 * 109.46946 * 59.99717 * 10 8 7 37 37 H 1.08998 * 109.47508 * 300.00200 * 11 10 8 38 38 H 1.09011 * 109.47182 * 60.00188 * 11 10 8 39 39 H 1.08999 * 109.47616 * 300.00389 * 12 11 10 40 40 H 1.09003 * 109.47280 * 60.00024 * 12 11 10 41 41 H 0.97000 * 119.99614 * 179.97438 * 16 15 13 42 42 H 1.09001 * 109.47245 * 179.97438 * 21 5 4 43 43 H 1.08999 * 109.47547 * 299.99437 * 21 5 4 44 44 H 1.09004 * 109.47066 * 300.00004 * 22 2 1 45 45 H 1.09003 * 109.47345 * 59.99926 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0795 0.7215 -1.2502 6 6 5.6095 0.7220 -1.2512 7 7 3.5906 1.4123 -2.4460 8 6 3.9203 0.9553 -3.6703 9 8 4.6175 -0.0307 -3.7821 10 6 3.4226 1.6696 -4.9005 11 6 3.9361 0.9515 -6.1500 12 6 3.4303 1.6762 -7.3989 13 6 3.9355 0.9686 -8.6298 14 1 4.5552 0.0895 -8.5310 15 6 3.6069 1.4433 -9.8817 16 7 2.8528 2.5141 -10.0018 17 14 4.2326 0.5657 -11.4074 18 1 3.7353 -0.8336 -11.4124 19 1 3.7428 1.2699 -12.6195 20 1 5.7176 0.5633 -11.4030 21 6 3.5695 -0.7210 -1.2502 22 6 2.0400 -0.7212 -1.2493 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5139 0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.6766 1.9564 -0.8899 29 1 3.9337 0.9285 0.8891 30 1 3.9334 2.4702 -0.0002 31 1 5.9725 1.7498 -1.2514 32 1 5.9736 0.2083 -0.3614 33 1 5.9725 0.2080 -2.1412 34 1 3.0332 2.2012 -2.3567 35 1 2.3326 1.6701 -4.9043 36 1 3.7863 2.6971 -4.8962 37 1 5.0261 0.9506 -6.1465 38 1 3.5719 -0.0760 -6.1541 39 1 2.3403 1.6768 -7.4023 40 1 3.7940 2.7038 -7.3951 41 1 2.6219 2.8483 -10.8827 42 1 3.9320 -1.2346 -2.1407 43 1 3.9332 -1.2350 -0.3606 44 1 1.6767 -1.7489 -1.2493 45 1 1.6767 -0.2073 -2.1392 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593970505.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:48 Heat of formation + Delta-G solvation = -85.451402 kcal Electronic energy + Delta-G solvation = -21100.571561 eV Core-core repulsion = 18115.995525 eV Total energy + Delta-G solvation = -2984.576036 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.56823 -38.15221 -34.81200 -34.07144 -32.25290 -31.42443 -30.99030 -28.75856 -27.65430 -24.55741 -23.80178 -22.96150 -21.22839 -20.53003 -19.72060 -19.05124 -17.02931 -16.04724 -15.92250 -15.25697 -14.80361 -14.45197 -14.37380 -14.24839 -13.86037 -13.56923 -13.41187 -12.95623 -12.45680 -12.37826 -12.21754 -12.16668 -11.88080 -11.83517 -11.59019 -11.38076 -11.32599 -11.02745 -10.75077 -10.71200 -10.57907 -10.51897 -10.33136 -10.21931 -9.62884 -9.43769 -9.16697 -8.92684 -8.83808 -8.29116 -5.95029 -3.96368 3.03222 3.38242 3.38336 3.41617 3.45842 4.42879 4.50886 4.52146 4.56914 4.83447 4.94653 5.09424 5.20026 5.31300 5.34057 5.39942 5.40934 5.45082 5.53096 5.62037 5.65290 5.72348 5.76915 5.77466 5.80083 5.85778 5.93795 5.96475 6.05691 6.14598 6.29668 6.32109 6.35300 6.37079 6.75118 6.77795 6.98347 7.20911 7.72951 7.77502 7.87489 8.05987 8.49971 8.59663 9.10589 9.67417 11.16478 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.029890 B = 0.003528 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.550081 B = 7933.486426 C = 8254.304535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.091 4.091 3 C -0.115 4.115 4 C -0.121 4.121 5 C 0.178 3.822 6 C -0.165 4.165 7 N -0.729 5.729 8 C 0.515 3.485 9 O -0.534 6.534 10 C -0.140 4.140 11 C -0.093 4.093 12 C 0.020 3.980 13 C -0.518 4.518 14 H 0.055 0.945 15 C 0.056 3.944 16 N -0.898 5.898 17 Si 0.892 3.108 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.277 1.277 21 C -0.130 4.130 22 C -0.111 4.111 23 H 0.055 0.945 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.081 0.919 34 H 0.396 0.604 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.015 0.985 40 H 0.015 0.985 41 H 0.260 0.740 42 H 0.087 0.913 43 H 0.063 0.937 44 H 0.058 0.942 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.372 -1.200 23.887 24.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.110 4.110 3 C -0.152 4.152 4 C -0.159 4.159 5 C 0.092 3.908 6 C -0.223 4.223 7 N -0.383 5.383 8 C 0.303 3.697 9 O -0.411 6.411 10 C -0.180 4.180 11 C -0.131 4.131 12 C -0.017 4.017 13 C -0.556 4.556 14 H 0.073 0.927 15 C -0.145 4.145 16 N -0.538 5.538 17 Si 0.720 3.280 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.169 4.169 22 C -0.149 4.149 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.100 0.900 34 H 0.230 0.770 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.033 0.967 40 H 0.033 0.967 41 H 0.070 0.930 42 H 0.106 0.894 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.944 -1.806 23.669 23.817 hybrid contribution -0.022 0.063 -0.796 0.799 sum -1.966 -1.743 22.873 23.023 Atomic orbital electron populations 1.21832 0.95377 1.01659 1.01646 1.21144 0.95315 0.95926 0.98602 1.21600 0.94996 0.96729 1.01907 1.21830 0.96022 1.00742 0.97265 1.20226 0.93707 0.92369 0.84454 1.22222 0.94576 1.02059 1.03406 1.46270 1.54503 1.32160 1.05372 1.21137 0.79481 0.84522 0.84546 1.90600 1.37431 1.26292 1.86737 1.21848 1.02137 1.00720 0.93310 1.21414 1.00264 0.99002 0.92436 1.19128 0.96288 0.95487 0.90772 1.21244 1.31242 1.12126 0.91005 0.92656 1.25015 0.95258 0.95097 0.99117 1.69956 1.37314 1.23025 1.23499 0.86657 0.79255 0.79794 0.82308 1.20232 1.21345 1.20239 1.21942 0.95561 0.95995 1.03371 1.21533 0.95538 1.00088 0.97732 0.92592 0.92795 0.92937 0.91497 0.91913 0.91795 0.90667 0.91414 0.92858 0.92368 0.90043 0.76961 0.89649 0.89618 0.92782 0.92784 0.96686 0.96678 0.93044 0.89438 0.91859 0.92276 0.91738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.19 37.16 0.34 -0.81 16 2 C -0.09 -0.76 2.72 -90.62 -0.25 -1.00 16 3 C -0.11 -0.87 5.03 -26.73 -0.13 -1.00 16 4 C -0.12 -0.96 4.78 -26.73 -0.13 -1.09 16 5 C 0.18 1.90 0.66 -131.82 -0.09 1.81 16 6 C -0.16 -1.89 8.40 37.16 0.31 -1.58 16 7 N -0.73 -8.53 4.04 -47.61 -0.19 -8.72 16 8 C 0.52 8.09 7.25 -10.98 -0.08 8.01 16 9 O -0.53 -10.15 12.19 5.55 0.07 -10.08 16 10 C -0.14 -2.34 5.70 -27.89 -0.16 -2.50 16 11 C -0.09 -2.03 4.44 -26.74 -0.12 -2.15 16 12 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 13 C -0.52 -15.15 9.11 -34.44 -0.31 -15.46 16 14 H 0.06 1.59 7.74 -52.48 -0.41 1.19 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.90 -27.33 13.29 55.43 0.74 -26.59 16 17 Si 0.89 22.20 29.54 -169.99 -5.02 17.18 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 C -0.13 -1.49 4.52 -26.76 -0.12 -1.62 16 22 C -0.11 -1.16 5.04 -26.76 -0.13 -1.30 16 23 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.50 6.86 -51.93 -0.36 0.14 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 1.19 6.16 -51.93 -0.32 0.87 16 34 H 0.40 3.75 7.32 -40.82 -0.30 3.45 16 35 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 37 H 0.05 1.23 8.10 -51.93 -0.42 0.81 16 38 H 0.05 1.23 8.10 -51.92 -0.42 0.80 16 39 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 42 H 0.09 1.29 6.18 -51.93 -0.32 0.97 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.06 0.77 7.60 -51.93 -0.39 0.37 16 LS Contribution 346.15 15.07 5.22 5.22 Total: -1.00 -31.97 346.15 -8.71 -40.68 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -8.41 Total: -0.94 kcal Atomic # 6 Polarization: -15.64 SS G_CDS: -1.10 Total: -16.75 kcal Atomic # 7 Polarization: -35.86 SS G_CDS: 0.54 Total: -35.31 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.07 Total: -10.08 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.97 -8.71 -40.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593970505.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.770 kcal (2) G-P(sol) polarization free energy of solvation -31.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds